Wall clock time and date at job start Fri Apr 10 2020 14:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48506 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47142 * 300.00049 * 3 2 1 6 6 H 1.48496 * 109.47324 * 60.00263 * 3 2 1 7 7 C 1.37879 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47026 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46864 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54652 * 68.37237 * 11 10 9 13 13 O 1.42102 * 110.54135 * 291.61606 * 11 10 9 14 14 N 1.65597 * 104.44890 * 179.97438 * 11 10 9 15 15 C 1.47019 * 125.65385 * 89.97085 * 14 11 10 16 16 C 1.54319 * 107.27362 * 178.97696 * 15 14 11 17 17 H 1.09001 * 110.72397 * 96.35159 * 16 15 14 18 18 C 1.50700 * 110.72019 * 219.44330 * 16 15 14 19 19 O 1.20826 * 120.00162 * 118.82231 * 18 16 15 20 20 O 1.34234 * 120.00068 * 298.54657 * 18 16 15 21 21 C 1.55155 * 102.94404 * 337.80668 * 16 15 14 22 22 H 1.08994 * 111.00708 * 277.42840 * 21 16 15 23 23 C 1.53002 * 111.00179 * 153.57577 * 21 16 15 24 24 F 1.39905 * 109.46842 * 180.02562 * 23 21 16 25 25 F 1.39897 * 109.47487 * 299.99745 * 23 21 16 26 26 C 1.47426 * 125.64656 * 270.01474 * 14 11 10 27 27 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47111 * 60.00068 * 9 7 2 29 29 H 1.09003 * 109.46874 * 299.99954 * 9 7 2 30 30 H 1.08994 * 109.47437 * 59.99879 * 10 9 7 31 31 H 1.09003 * 109.46939 * 299.99525 * 10 9 7 32 32 H 1.09004 * 109.87852 * 59.55825 * 15 14 11 33 33 H 1.09000 * 109.88009 * 298.39885 * 15 14 11 34 34 H 0.96706 * 116.99872 * 179.97438 * 20 18 16 35 35 H 1.08994 * 109.47193 * 60.00881 * 23 21 16 36 36 H 1.09002 * 110.36443 * 322.92918 * 26 14 11 37 37 H 1.09005 * 110.37017 * 85.14195 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 8 0.6644 -5.4194 -1.2385 13 8 0.6638 -5.4201 1.2355 14 7 2.5202 -6.3928 -0.0020 15 6 3.1324 -6.9931 1.1923 16 6 4.1590 -8.0373 0.7053 17 1 5.1614 -7.6099 0.6798 18 6 4.1269 -9.2645 1.5793 19 8 3.8404 -10.3376 1.1037 20 8 4.4221 -9.1664 2.8851 21 6 3.6634 -8.3702 -0.7268 22 1 2.8627 -9.1092 -0.7013 23 6 4.8185 -8.8466 -1.6099 24 9 4.3371 -9.1367 -2.8910 25 9 5.7875 -7.8409 -1.6931 26 6 3.1336 -6.9936 -1.2003 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5568 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6045 0.8894 31 1 2.8717 -3.6045 -0.8906 32 1 2.3667 -7.4798 1.7965 33 1 3.6355 -6.2234 1.7776 34 1 4.3877 -9.9809 3.4054 35 1 5.2615 -9.7431 -1.1763 36 1 2.3872 -7.1236 -1.9839 37 1 3.9544 -6.3722 -1.5585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592447587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:10 Heat of formation + Delta-G solvation = -297.153332 kcal Electronic energy + Delta-G solvation = -26558.957441 eV Core-core repulsion = 22097.785756 eV Total energy + Delta-G solvation = -4461.171685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97470 -47.95915 -41.64780 -39.31842 -38.25401 -37.15294 -37.08040 -35.89356 -33.21358 -33.12372 -31.17255 -27.61575 -26.83480 -25.28458 -23.52473 -22.86831 -21.42575 -20.10756 -19.24088 -19.18319 -18.73695 -18.47550 -18.10440 -17.83685 -17.24882 -17.10542 -16.95858 -16.51681 -16.47231 -15.65374 -15.21064 -15.00458 -14.72456 -14.55040 -14.42895 -14.35261 -14.27808 -13.81852 -13.71893 -13.44211 -13.26218 -13.21606 -13.03646 -12.94779 -12.78967 -12.72402 -12.53028 -12.30729 -12.23624 -12.11450 -11.83411 -11.74013 -11.65108 -11.17522 -10.64960 -10.08630 -8.25618 -6.39466 -0.84185 1.05590 1.42470 1.42815 1.55953 1.58348 1.94874 2.38863 2.61821 2.67134 2.79775 3.08343 3.15708 3.21189 3.36932 3.61038 3.91031 3.92964 4.03387 4.07611 4.13918 4.26327 4.30905 4.40526 4.61847 4.69925 4.76048 4.82979 4.92066 5.15481 5.28175 5.30102 5.55231 5.69188 6.06313 6.74609 6.92659 7.30998 8.86839 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.003269 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.861592 B = 8562.267188 C = 8923.945852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.583 4.583 11 S 2.630 3.370 12 O -0.989 6.989 13 O -0.986 6.986 14 N -1.012 6.012 15 C 0.125 3.875 16 C -0.080 4.080 17 H 0.164 0.836 18 C 0.500 3.500 19 O -0.536 6.536 20 O -0.503 6.503 21 C -0.135 4.135 22 H 0.125 0.875 23 C 0.279 3.721 24 F -0.210 7.210 25 F -0.204 7.204 26 C 0.110 3.890 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.433 0.567 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.174 -20.350 2.829 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.715 4.715 11 S 2.730 3.270 12 O -0.980 6.980 13 O -0.977 6.977 14 N -0.851 5.851 15 C 0.000 4.000 16 C -0.101 4.101 17 H 0.181 0.819 18 C 0.343 3.657 19 O -0.426 6.426 20 O -0.317 6.317 21 C -0.156 4.156 22 H 0.143 0.857 23 C 0.225 3.775 24 F -0.192 7.192 25 F -0.185 7.185 26 C -0.015 4.015 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.027 0.973 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.296 0.704 35 H 0.162 0.838 36 H 0.106 0.894 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.960 -20.308 2.465 24.767 hybrid contribution 0.199 0.755 0.136 0.792 sum 14.159 -19.554 2.602 24.281 Atomic orbital electron populations 1.70109 1.08091 1.28252 1.50988 1.26110 0.95830 1.03873 0.94405 0.85265 0.79230 0.78031 0.77725 1.17816 1.20542 1.20393 1.21543 0.94042 0.90650 1.51337 0.90451 1.18852 0.93675 0.93096 0.96454 1.30357 1.12750 1.15759 1.12683 1.04316 0.74015 0.75925 0.72733 1.93502 1.72122 1.85688 1.46675 1.93503 1.72043 1.85663 1.46484 1.58471 1.58058 1.55160 1.13367 1.21779 0.95144 0.96254 0.86808 1.22091 1.04694 0.92121 0.91168 0.81885 1.22818 0.71551 0.89599 0.81748 1.90757 1.45569 1.30912 1.75318 1.84499 1.80917 1.45323 1.20944 1.23460 0.99209 0.99457 0.93451 0.85678 1.21860 0.85204 0.90591 0.79873 1.92998 1.89095 1.93947 1.43117 1.92988 1.64807 1.64241 1.96452 1.22249 0.99202 0.92484 0.87563 0.92419 0.97565 0.97342 0.83438 0.83892 0.90693 0.86988 0.70402 0.83811 0.89355 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -29.14 9.11 25.60 0.23 -28.90 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 0.93 4.98 29.85 0.15 1.08 16 10 C -0.58 -20.96 6.12 71.98 0.44 -20.52 16 11 S 2.63 91.11 5.65 -56.49 -0.32 90.79 16 12 O -0.99 -40.71 17.28 -127.65 -2.21 -42.92 16 13 O -0.99 -39.66 17.60 -127.65 -2.25 -41.90 16 14 N -1.01 -24.16 3.62 -506.42 -1.83 -25.99 16 15 C 0.13 2.20 6.47 86.73 0.56 2.76 16 16 C -0.08 -1.00 2.88 -10.35 -0.03 -1.03 16 17 H 0.16 1.17 7.56 -2.39 -0.02 1.15 16 18 C 0.50 6.45 7.49 71.24 0.53 6.98 16 19 O -0.54 -9.66 16.52 21.96 0.36 -9.30 16 20 O -0.50 -4.25 13.40 -51.46 -0.69 -4.94 16 21 C -0.14 -2.09 2.32 -9.40 -0.02 -2.11 16 22 H 0.13 2.11 7.49 -2.39 -0.02 2.09 16 23 C 0.28 3.77 4.99 71.98 0.36 4.13 16 24 F -0.21 -3.89 17.27 44.97 0.78 -3.12 16 25 F -0.20 -3.05 15.78 44.97 0.71 -2.34 16 26 C 0.11 2.21 6.44 86.86 0.56 2.77 16 27 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 28 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.15 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 32 H 0.07 1.43 7.81 -2.38 -0.02 1.41 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.43 0.19 9.10 -74.05 -0.67 -0.48 16 35 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.01 7.67 -2.39 -0.02 1.99 16 37 H 0.10 1.69 7.26 -2.38 -0.02 1.67 16 Total: -1.00 -80.20 339.32 0.56 -79.64 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.45 Total: 6.04 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.25 Total: -34.60 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.55 Total: -82.05 kcal Atomic # 8 Polarization: -94.28 SS G_CDS: -4.78 Total: -99.06 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.49 Total: -5.46 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 91.11 SS G_CDS: -0.32 Total: 90.79 kcal Total: -80.20 0.56 -79.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592447587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.513 kcal (2) G-P(sol) polarization free energy of solvation -80.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds