Wall clock time and date at job start Fri Apr 10 2020 14:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99686 * 3 2 1 5 5 H 1.48495 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46967 * 119.99788 * 3 2 1 7 7 C 1.38796 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99743 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47155 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00018 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00527 * 179.97438 * 11 10 9 14 14 N 1.40099 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.34775 * 120.00006 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00105 * 180.02562 * 15 14 13 18 18 N 1.46493 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 15 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47745 * 59.99457 * 10 9 7 28 28 H 1.09001 * 109.47030 * 299.99667 * 10 9 7 29 29 H 0.97004 * 119.99733 * 359.97438 * 13 11 10 30 30 H 0.96995 * 119.99607 * 0.02562 * 14 13 11 31 31 H 1.08997 * 109.47342 * 59.99110 * 17 15 14 32 32 H 1.09001 * 109.46775 * 299.99724 * 17 15 14 33 33 H 0.96998 * 120.00266 * 359.97438 * 18 17 15 34 34 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 35 35 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 36 36 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 7 2.3529 -7.6551 -0.0008 15 6 3.2097 -8.6955 -0.0019 16 8 4.4059 -8.4959 -0.0034 17 6 2.6812 -10.1068 -0.0026 18 7 3.8035 -11.0484 -0.0044 19 6 3.5694 -12.3757 -0.0048 20 8 2.4259 -12.7920 -0.0030 21 6 4.6929 -13.3184 -0.0072 22 6 4.5974 -14.6805 -0.0073 23 6 5.9102 -15.1771 -0.0094 24 6 6.7391 -14.1099 -0.0110 25 8 6.0019 -12.9918 -0.0095 26 1 -0.4850 0.8400 0.0004 27 1 3.1246 -3.7313 0.8904 28 1 3.1244 -3.7313 -0.8895 29 1 3.8010 -6.1835 -0.0012 30 1 1.3961 -7.8147 -0.0007 31 1 2.0720 -10.2663 -0.8922 32 1 2.0732 -10.2675 0.8877 33 1 4.7150 -10.7167 -0.0054 34 1 3.6879 -15.2630 -0.0060 35 1 6.2029 -16.2167 -0.0104 36 1 7.8183 -14.1517 -0.0170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318136507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:09 Heat of formation + Delta-G solvation = -51.553680 kcal Electronic energy + Delta-G solvation = -23152.729381 eV Core-core repulsion = 19152.896882 eV Total energy + Delta-G solvation = -3999.832499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.15351 -40.74699 -39.76108 -38.82714 -35.59204 -34.98947 -33.53365 -32.50325 -32.17761 -30.76805 -29.23564 -27.52962 -25.54915 -23.65517 -22.25048 -21.69501 -21.14063 -20.86255 -19.35736 -18.11111 -18.00180 -17.28850 -16.91545 -16.63469 -16.41405 -16.31240 -15.73420 -15.33727 -14.92755 -14.86329 -14.70115 -14.29419 -13.82116 -13.57322 -13.49971 -13.46884 -13.20278 -13.15580 -12.70255 -12.42170 -11.35054 -11.13010 -11.08128 -10.91085 -10.86136 -10.66979 -10.55855 -9.93419 -9.84982 -9.81497 -9.18136 -9.12734 -8.51623 -8.37532 -6.60794 -6.28936 -4.01316 0.56264 1.46719 1.86148 1.95885 2.19700 2.68767 2.70574 2.79816 3.11648 3.20067 3.25010 3.33876 3.71418 4.12468 4.16695 4.32587 4.40666 4.52878 4.77383 4.82577 4.93743 5.06782 5.12736 5.27728 5.39789 5.47469 5.63330 5.69791 5.81057 5.97827 6.29632 6.46561 6.47893 6.92136 7.35104 7.52859 7.53225 7.61546 8.27777 8.32866 9.16576 10.78356 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.043521 B = 0.001649 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.211520 B =16977.596310 C =17600.360906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.146 4.146 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.531 5.531 14 N -0.511 5.511 15 C 0.508 3.492 16 O -0.540 6.540 17 C 0.110 3.890 18 N -0.708 5.708 19 C 0.609 3.391 20 O -0.518 6.518 21 C -0.081 4.081 22 C -0.115 4.115 23 C -0.227 4.227 24 C -0.001 4.001 25 O -0.162 6.162 26 H 0.270 0.730 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.431 0.569 30 H 0.436 0.564 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.419 0.581 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 -27.972 -0.020 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.688 4.688 8 H 0.093 0.907 9 S 0.176 5.824 10 C -0.297 4.297 11 C 0.322 3.678 12 O -0.385 6.385 13 N -0.283 5.283 14 N -0.257 5.257 15 C 0.292 3.708 16 O -0.416 6.416 17 C -0.018 4.018 18 N -0.363 5.363 19 C 0.395 3.605 20 O -0.395 6.395 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.246 4.246 24 C -0.071 4.071 25 O -0.057 6.057 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.273 0.727 30 H 0.278 0.722 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.258 0.742 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.689 -27.986 -0.020 29.957 hybrid contribution 2.456 1.193 -0.002 2.731 sum 13.145 -26.793 -0.022 29.844 Atomic orbital electron populations 1.69993 1.05977 1.27757 1.46479 1.24989 0.95042 0.99075 0.94327 0.86197 0.79230 0.81059 0.78872 1.19878 1.20769 1.19872 1.22829 0.94994 0.91427 1.59530 0.90726 1.85442 1.03965 0.96187 1.96805 1.23493 1.07339 0.93069 1.05844 1.20747 0.86424 0.85319 0.75274 1.90740 1.14970 1.84927 1.47913 1.45240 1.10612 0.93796 1.78674 1.44605 1.10556 0.96002 1.74573 1.20561 0.86765 0.86116 0.77311 1.90742 1.14964 1.85153 1.50780 1.20955 0.89970 0.84644 1.06253 1.45533 1.11055 1.04824 1.74869 1.16438 0.86391 0.80873 0.76770 1.90918 1.20084 1.78005 1.50516 1.21884 0.81854 0.94729 1.14857 1.22012 0.99287 0.92417 0.99872 1.21902 0.92392 1.00787 1.09529 1.24492 0.97909 0.82759 1.01986 1.84097 1.16457 1.34849 1.70320 0.92002 0.88382 0.88392 0.72671 0.72185 0.87052 0.87047 0.74243 0.82029 0.82417 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 2 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.05 -1.29 20.57 -107.50 -2.21 -3.50 16 10 C -0.15 -2.70 6.16 36.01 0.22 -2.48 16 11 C 0.54 9.10 7.96 -10.99 -0.09 9.01 16 12 O -0.51 -10.39 15.70 5.55 0.09 -10.30 16 13 N -0.53 -6.93 6.26 31.22 0.20 -6.74 16 14 N -0.51 -5.55 6.26 31.22 0.20 -5.35 16 15 C 0.51 5.04 8.02 -10.99 -0.09 4.95 16 16 O -0.54 -6.78 15.51 5.56 0.09 -6.69 16 17 C 0.11 0.84 6.15 -5.20 -0.03 0.80 16 18 N -0.71 -6.16 5.52 -62.81 -0.35 -6.50 16 19 C 0.61 6.07 7.79 -12.86 -0.10 5.97 16 20 O -0.52 -6.37 16.86 5.19 0.09 -6.28 16 21 C -0.08 -0.72 7.13 -36.79 -0.26 -0.99 16 22 C -0.12 -0.88 10.62 -39.39 -0.42 -1.30 16 23 C -0.23 -1.24 10.87 -39.89 -0.43 -1.67 16 24 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 25 O -0.16 -1.27 10.40 5.00 0.05 -1.22 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 28 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.43 5.00 8.00 -182.59 -1.46 3.54 16 30 H 0.44 4.24 8.00 -182.60 -1.46 2.78 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.42 3.65 7.19 -40.82 -0.29 3.36 16 34 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.16 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.21 0.21 8.06 -52.49 -0.42 -0.22 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -36.24 349.00 -7.25 -43.49 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.72 Total: 4.55 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.64 Total: 2.13 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.78 Total: -43.27 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.31 Total: -24.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.21 Total: -3.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.24 -7.25 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318136507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.064 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds