Wall clock time and date at job start Fri Apr 10 2020 14:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99686 * 3 2 1 5 5 H 1.48495 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46967 * 119.99788 * 3 2 1 7 7 C 1.38796 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99743 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47155 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00018 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00527 * 179.97438 * 11 10 9 14 14 N 1.40099 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.34775 * 120.00006 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00105 * 180.02562 * 15 14 13 18 18 N 1.46493 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 15 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47745 * 59.99457 * 10 9 7 28 28 H 1.09001 * 109.47030 * 299.99667 * 10 9 7 29 29 H 0.97004 * 119.99733 * 359.97438 * 13 11 10 30 30 H 0.96995 * 119.99607 * 0.02562 * 14 13 11 31 31 H 1.08997 * 109.47342 * 59.99110 * 17 15 14 32 32 H 1.09001 * 109.46775 * 299.99724 * 17 15 14 33 33 H 0.96998 * 120.00266 * 359.97438 * 18 17 15 34 34 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 35 35 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 36 36 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 7 2.3529 -7.6551 -0.0008 15 6 3.2097 -8.6955 -0.0019 16 8 4.4059 -8.4959 -0.0034 17 6 2.6812 -10.1068 -0.0026 18 7 3.8035 -11.0484 -0.0044 19 6 3.5694 -12.3757 -0.0048 20 8 2.4259 -12.7920 -0.0030 21 6 4.6929 -13.3184 -0.0072 22 6 4.5974 -14.6805 -0.0073 23 6 5.9102 -15.1771 -0.0094 24 6 6.7391 -14.1099 -0.0110 25 8 6.0019 -12.9918 -0.0095 26 1 -0.4850 0.8400 0.0004 27 1 3.1246 -3.7313 0.8904 28 1 3.1244 -3.7313 -0.8895 29 1 3.8010 -6.1835 -0.0012 30 1 1.3961 -7.8147 -0.0007 31 1 2.0720 -10.2663 -0.8922 32 1 2.0732 -10.2675 0.8877 33 1 4.7150 -10.7167 -0.0054 34 1 3.6879 -15.2630 -0.0060 35 1 6.2029 -16.2167 -0.0104 36 1 7.8183 -14.1517 -0.0170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318136507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:07 Heat of formation + Delta-G solvation = -81.041131 kcal Electronic energy + Delta-G solvation = -23154.008053 eV Core-core repulsion = 19152.896882 eV Total energy + Delta-G solvation = -4001.111170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.65486 -41.69969 -40.71309 -39.92208 -36.66555 -35.78001 -34.57998 -34.04140 -33.31930 -31.43927 -30.39323 -28.40508 -27.61544 -24.29315 -22.77614 -22.72868 -22.17864 -21.50078 -20.15574 -19.68116 -19.16952 -18.36833 -17.54352 -17.42495 -17.18767 -17.11840 -16.86971 -16.73171 -16.49375 -16.14387 -15.63222 -15.61036 -14.98737 -14.55640 -14.51437 -14.12798 -14.05961 -13.93507 -13.70705 -13.56138 -13.17184 -12.86729 -12.65919 -12.52801 -11.81722 -11.68120 -11.61102 -11.24159 -11.12266 -11.05491 -10.52393 -10.30734 -9.68590 -9.59676 -8.66423 -8.34538 -6.12416 -0.01558 0.42680 1.03287 1.33289 1.41337 1.45162 1.49976 1.52197 1.57721 1.69492 2.02284 2.11161 2.26834 2.75436 3.00356 3.18276 3.42115 3.68542 3.88885 3.95646 4.11002 4.18821 4.25053 4.26186 4.48824 4.61514 4.90166 4.92312 4.96702 5.37337 5.38727 5.43452 5.53215 5.79788 6.20319 6.23826 6.29300 6.63903 6.82004 7.07546 7.14166 8.74097 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.043521 B = 0.001649 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.211520 B =16977.596310 C =17600.360906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.086 0.914 9 S -0.135 6.135 10 C -0.124 4.124 11 C 0.542 3.458 12 O -0.551 6.551 13 N -0.515 5.515 14 N -0.509 5.509 15 C 0.518 3.482 16 O -0.562 6.562 17 C 0.113 3.887 18 N -0.705 5.705 19 C 0.609 3.391 20 O -0.550 6.550 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.235 4.235 24 C 0.011 3.989 25 O -0.174 6.174 26 H 0.271 0.729 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.441 0.559 30 H 0.442 0.558 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.419 0.581 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.448 -28.975 -0.022 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.104 0.896 9 S 0.092 5.908 10 C -0.277 4.277 11 C 0.329 3.671 12 O -0.426 6.426 13 N -0.266 5.266 14 N -0.257 5.257 15 C 0.305 3.695 16 O -0.440 6.440 17 C -0.014 4.014 18 N -0.359 5.359 19 C 0.397 3.603 20 O -0.430 6.430 21 C -0.166 4.166 22 C -0.140 4.140 23 C -0.254 4.254 24 C -0.059 4.059 25 O -0.070 6.070 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.285 0.715 30 H 0.286 0.714 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.258 0.742 34 H 0.181 0.819 35 H 0.201 0.799 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 13.427 -29.010 -0.023 31.967 hybrid contribution 1.763 1.289 -0.001 2.184 sum 15.190 -27.722 -0.024 31.610 Atomic orbital electron populations 1.70156 1.07896 1.28718 1.47857 1.26071 0.95917 1.03184 0.93700 0.85035 0.77823 0.75884 0.79463 1.18738 1.20531 1.18727 1.23206 0.95546 0.91972 1.59062 0.89638 1.85557 1.09379 0.98771 1.97105 1.23284 1.04306 0.92226 1.07855 1.20280 0.85996 0.85542 0.75317 1.90734 1.16503 1.85346 1.50053 1.44799 1.10513 0.94457 1.76809 1.44749 1.11160 0.94812 1.74976 1.20912 0.86190 0.86474 0.75939 1.90739 1.16039 1.85511 1.51683 1.21076 0.89814 0.82622 1.07936 1.45531 1.11277 1.04685 1.74405 1.16578 0.86401 0.81150 0.76158 1.90889 1.21289 1.78504 1.52322 1.21751 0.82239 0.94913 1.17682 1.22290 1.00568 0.92244 0.98900 1.22246 0.91317 1.02294 1.09494 1.25396 0.99439 0.81788 0.99257 1.84088 1.16131 1.36115 1.70652 0.91964 0.86292 0.86303 0.71512 0.71443 0.85342 0.85337 0.74214 0.81932 0.79905 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.35 13.22 21.65 0.29 -54.06 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.55 -30.16 9.50 67.95 0.65 -29.51 16 8 H 0.09 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.13 -7.05 20.57 -56.49 -1.16 -8.22 16 10 C -0.12 -4.49 6.16 71.24 0.44 -4.05 16 11 C 0.54 17.95 7.96 87.66 0.70 18.65 16 12 O -0.55 -22.38 15.70 -3.05 -0.05 -22.43 16 13 N -0.52 -12.62 6.26 -173.53 -1.09 -13.71 16 14 N -0.51 -10.30 6.26 -173.54 -1.09 -11.39 16 15 C 0.52 9.49 8.02 87.66 0.70 10.19 16 16 O -0.56 -13.25 15.51 -3.03 -0.05 -13.30 16 17 C 0.11 1.57 6.15 85.63 0.53 2.09 16 18 N -0.70 -11.73 5.52 -470.85 -2.60 -14.33 16 19 C 0.61 12.05 7.79 86.44 0.67 12.72 16 20 O -0.55 -13.59 16.86 -4.33 -0.07 -13.66 16 21 C -0.11 -1.99 7.13 24.08 0.17 -1.82 16 22 C -0.12 -1.73 10.62 22.39 0.24 -1.50 16 23 C -0.23 -2.06 10.87 22.07 0.24 -1.82 16 24 C 0.01 0.08 12.08 67.10 0.81 0.89 16 25 O -0.17 -2.50 10.40 -5.01 -0.05 -2.56 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 28 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 29 H 0.44 9.29 8.00 -213.32 -1.71 7.58 16 30 H 0.44 8.07 8.00 -213.33 -1.71 6.37 16 31 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.42 7.01 7.19 -92.71 -0.67 6.34 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.25 -0.51 8.06 -2.91 -0.02 -0.53 16 Total: -1.00 -80.24 349.00 -1.13 -81.37 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -2.90 Total: 20.62 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.61 Total: 7.22 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -4.49 Total: -93.49 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.22 Total: -51.94 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -7.05 SS G_CDS: -1.16 Total: -8.22 kcal Total: -80.24 -1.13 -81.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318136507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds