Wall clock time and date at job start Fri Apr 10 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46867 * 299.99800 * 3 2 1 6 6 H 1.48498 * 109.47214 * 59.99647 * 3 2 1 7 7 C 1.38952 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99709 * 197.99834 * 7 2 1 9 9 N 1.37100 * 119.99750 * 17.99515 * 7 2 1 10 10 C 1.34777 * 120.00185 * 44.48888 * 9 7 2 11 11 O 1.21296 * 120.00003 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99984 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47029 * 179.97438 * 12 10 9 14 14 N 1.46498 * 109.46956 * 179.97438 * 13 12 10 15 15 C 1.35856 * 119.70439 * 269.72564 * 14 13 12 16 16 N 1.29833 * 123.36817 * 179.72498 * 15 14 13 17 17 C 1.35658 * 121.61609 * 0.56133 * 16 15 14 18 18 C 1.39638 * 121.64446 * 179.72997 * 17 16 15 19 19 C 1.37664 * 119.68919 * 180.02562 * 18 17 16 20 20 C 1.38889 * 120.81604 * 0.02562 * 19 18 17 21 21 C 1.37766 * 120.57146 * 359.97165 * 20 19 18 22 22 C 1.39345 * 119.51585 * 0.02757 * 21 20 19 23 23 C 1.35355 * 119.69410 * 90.00768 * 14 13 12 24 24 O 1.21729 * 121.29664 * 359.97438 * 23 14 13 25 25 C 1.46503 * 119.99625 * 224.48242 * 9 7 2 26 26 C 1.52990 * 117.49950 * 3.28068 * 25 9 7 27 27 C 1.52996 * 117.50435 * 294.61539 * 25 9 7 28 28 H 0.97005 * 120.00101 * 354.96822 * 1 2 3 29 29 H 1.09007 * 109.46836 * 60.00267 * 12 10 9 30 30 H 1.08998 * 109.47407 * 300.00092 * 12 10 9 31 31 H 1.08998 * 109.47321 * 300.00414 * 13 12 10 32 32 H 1.08997 * 109.46807 * 60.00571 * 13 12 10 33 33 H 1.08002 * 118.31323 * 0.02562 * 15 14 13 34 34 H 1.08004 * 120.15919 * 0.02774 * 18 17 16 35 35 H 1.07995 * 119.59770 * 180.02562 * 19 18 17 36 36 H 1.07994 * 119.71582 * 179.97438 * 20 19 18 37 37 H 1.07993 * 120.24160 * 180.02562 * 21 20 19 38 38 H 1.09002 * 115.54116 * 148.94597 * 25 9 7 39 39 H 1.08998 * 117.50249 * 359.97438 * 26 25 9 40 40 H 1.09008 * 117.49843 * 145.01697 * 26 25 9 41 41 H 1.08995 * 117.50197 * 214.98214 * 27 25 9 42 42 H 1.09001 * 117.49557 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2261 0.2896 9 7 1.3736 -2.3618 -0.3658 10 6 0.5767 -2.3787 -1.4526 11 8 0.4212 -1.3689 -2.1064 12 6 -0.1211 -3.6522 -1.8555 13 6 -0.9569 -3.4001 -3.1120 14 7 -1.6348 -4.6382 -3.5040 15 6 -1.0248 -5.4972 -4.3618 16 7 -1.5573 -6.6151 -4.7522 17 6 -2.7869 -7.0026 -4.3301 18 6 -3.3626 -8.2022 -4.7539 19 6 -4.6133 -8.5558 -4.3005 20 6 -5.3119 -7.7336 -3.4259 21 6 -4.7650 -6.5453 -2.9935 22 6 -3.5001 -6.1689 -3.4406 23 6 -2.8657 -4.9133 -3.0127 24 8 -3.4259 -4.1505 -2.2471 25 6 1.5611 -3.5813 0.4242 26 6 2.4157 -3.4792 1.6890 27 6 2.9615 -4.1967 0.4520 28 1 -0.4850 0.8368 0.0737 29 1 -0.7728 -3.9811 -1.0460 30 1 0.6209 -4.4237 -2.0610 31 1 -1.6989 -2.6287 -2.9061 32 1 -0.3056 -3.0710 -3.9216 33 1 -0.0445 -5.2390 -4.7345 34 1 -2.8290 -8.8495 -5.4342 35 1 -5.0570 -9.4841 -4.6289 36 1 -6.2922 -8.0283 -3.0817 37 1 -5.3127 -5.9103 -2.3131 38 1 0.7111 -4.2633 0.4447 39 1 2.8388 -2.5048 1.9333 40 1 2.1282 -4.0944 2.5417 41 1 3.0329 -5.2836 0.4912 42 1 3.7433 -3.6945 -0.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058328064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:29 Heat of formation + Delta-G solvation = 24.620335 kcal Electronic energy + Delta-G solvation = -27267.377860 eV Core-core repulsion = 23407.070752 eV Total energy + Delta-G solvation = -3860.307108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.60672 -38.90487 -38.40626 -37.47361 -36.22305 -34.61110 -32.89200 -31.67037 -31.12053 -30.30323 -29.96943 -25.96498 -24.84906 -24.44114 -22.71189 -22.01779 -21.73434 -21.17332 -19.23526 -18.96324 -18.70587 -17.34046 -16.38941 -16.13311 -15.77919 -15.51110 -15.13574 -15.02801 -14.62156 -14.55410 -14.12726 -14.05881 -13.93342 -13.66814 -13.36185 -13.00123 -12.72459 -12.43514 -12.14651 -11.99141 -11.92249 -11.53197 -11.14053 -11.00639 -10.93638 -10.87047 -10.51599 -10.22667 -10.16834 -10.07049 -9.98450 -9.97182 -9.77766 -9.30217 -8.76018 -8.19421 -8.07318 -7.08645 -6.14078 -3.91306 0.43354 0.69717 2.12679 2.46785 2.71154 3.27562 3.36669 3.39099 3.87346 3.93834 4.02247 4.16647 4.23071 4.56196 4.65116 4.71787 4.73351 4.86192 5.03515 5.12630 5.20596 5.25800 5.31446 5.38977 5.54364 5.58313 5.72442 5.73687 5.76840 5.91383 5.94640 6.07842 6.14219 6.17827 6.19453 6.22111 6.36521 6.43360 6.56151 6.68635 6.70995 6.89167 7.58726 7.71974 7.79915 8.22465 9.00926 9.08148 9.60678 10.20727 10.94622 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.003048 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.675176 B = 9183.449324 C = 9661.994167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.350 4.350 8 H 0.078 0.922 9 N -0.424 5.424 10 C 0.488 3.512 11 O -0.535 6.535 12 C -0.147 4.147 13 C 0.113 3.887 14 N -0.543 5.543 15 C 0.386 3.614 16 N -0.537 5.537 17 C 0.156 3.844 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.040 4.040 22 C -0.198 4.198 23 C 0.541 3.459 24 O -0.499 6.499 25 C 0.073 3.927 26 C -0.173 4.173 27 C -0.206 4.206 28 H 0.265 0.735 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.202 0.798 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -16.573 -7.052 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.477 4.477 8 H 0.096 0.904 9 N -0.145 5.145 10 C 0.275 3.725 11 O -0.413 6.413 12 C -0.189 4.189 13 C -0.009 4.009 14 N -0.265 5.265 15 C 0.099 3.901 16 N -0.258 5.258 17 C 0.047 3.953 18 C -0.135 4.135 19 C -0.096 4.096 20 C -0.164 4.164 21 C -0.060 4.060 22 C -0.203 4.203 23 C 0.334 3.666 24 O -0.372 6.372 25 C -0.034 4.034 26 C -0.210 4.210 27 C -0.245 4.245 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.218 0.782 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.136 -16.022 -7.471 18.409 hybrid contribution -0.019 1.170 0.785 1.409 sum -5.155 -14.852 -6.686 17.084 Atomic orbital electron populations 1.69838 1.06531 1.27432 1.42534 1.25268 0.94835 0.99435 0.94207 0.86149 0.79752 0.82594 0.77540 1.19579 1.20612 1.21179 1.18882 0.94415 0.83638 1.50753 0.90389 1.42740 1.43883 1.06967 1.20920 1.19422 0.83101 0.88178 0.81783 1.90545 1.62777 1.34651 1.53332 1.21911 0.99343 0.99772 0.97846 1.21821 0.97474 0.83320 0.98262 1.46896 1.17296 1.22302 1.39972 1.24860 0.97059 0.83977 0.84250 1.68706 1.12358 1.15265 1.29491 1.18860 0.89732 0.94195 0.92529 1.20824 0.95615 0.95412 1.01668 1.21262 0.93914 0.99118 0.95332 1.21152 1.00821 0.94844 0.99614 1.21049 0.92726 0.95732 0.96458 1.20662 0.98490 0.96619 1.04575 1.18470 0.80590 0.86520 0.81062 1.90920 1.62945 1.49805 1.33504 1.21711 0.92534 0.91659 0.97450 1.23070 1.04385 1.02494 0.91091 1.23320 0.99617 0.98444 1.03155 0.92533 0.90123 0.90245 0.87335 0.87965 0.78200 0.84495 0.85114 0.85169 0.84550 0.88205 0.87416 0.89806 0.89826 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.46 11.74 55.50 0.65 -23.81 16 2 C 0.07 2.04 4.39 -17.47 -0.08 1.96 16 3 Si 0.91 21.62 29.59 -169.99 -5.03 16.59 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.35 -9.34 7.91 -14.93 -0.12 -9.46 16 8 H 0.08 2.02 7.27 -52.49 -0.38 1.64 16 9 N -0.42 -10.32 2.83 -107.73 -0.31 -10.62 16 10 C 0.49 11.75 6.96 -10.99 -0.08 11.67 16 11 O -0.53 -14.84 13.75 5.54 0.08 -14.77 16 12 C -0.15 -2.66 4.64 -27.88 -0.13 -2.79 16 13 C 0.11 1.84 4.65 -4.04 -0.02 1.82 16 14 N -0.54 -7.81 2.61 -118.86 -0.31 -8.12 16 15 C 0.39 4.45 11.41 -90.18 -1.03 3.42 16 16 N -0.54 -6.74 10.37 -12.01 -0.12 -6.86 16 17 C 0.16 2.03 6.63 -84.51 -0.56 1.47 16 18 C -0.12 -1.19 10.03 -39.27 -0.39 -1.59 16 19 C -0.08 -0.66 10.00 -39.55 -0.40 -1.05 16 20 C -0.15 -1.36 10.02 -39.51 -0.40 -1.75 16 21 C -0.04 -0.49 9.68 -39.34 -0.38 -0.87 16 22 C -0.20 -2.81 5.89 -104.78 -0.62 -3.43 16 23 C 0.54 8.95 7.66 -12.43 -0.10 8.85 16 24 O -0.50 -9.95 16.32 5.16 0.08 -9.86 16 25 C 0.07 1.43 5.87 -67.94 -0.40 1.03 16 26 C -0.17 -3.08 9.80 -26.70 -0.26 -3.34 16 27 C -0.21 -3.40 10.36 -26.70 -0.28 -3.68 16 28 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 29 H 0.08 1.54 7.57 -51.92 -0.39 1.15 16 30 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.11 2.14 7.42 -51.93 -0.39 1.75 16 32 H 0.10 1.46 7.94 -51.93 -0.41 1.05 16 33 H 0.20 1.51 7.98 -52.49 -0.42 1.09 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.64 7.83 -52.49 -0.41 1.23 16 38 H 0.10 1.81 6.96 -51.93 -0.36 1.44 16 39 H 0.11 2.12 6.73 -51.93 -0.35 1.77 16 40 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -34.95 359.18 -9.97 -44.93 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.21 Total: 4.86 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -5.22 Total: 2.25 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.09 Total: -49.41 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.16 Total: -24.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.95 -9.97 -44.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.548 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds