Wall clock time and date at job start Fri Apr 10 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46867 * 299.99800 * 3 2 1 6 6 H 1.48498 * 109.47214 * 59.99647 * 3 2 1 7 7 C 1.38952 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99709 * 197.99834 * 7 2 1 9 9 N 1.37100 * 119.99750 * 17.99515 * 7 2 1 10 10 C 1.34777 * 120.00185 * 44.48888 * 9 7 2 11 11 O 1.21296 * 120.00003 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99984 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47029 * 179.97438 * 12 10 9 14 14 N 1.46498 * 109.46956 * 179.97438 * 13 12 10 15 15 C 1.35856 * 119.70439 * 269.72564 * 14 13 12 16 16 N 1.29833 * 123.36817 * 179.72498 * 15 14 13 17 17 C 1.35658 * 121.61609 * 0.56133 * 16 15 14 18 18 C 1.39638 * 121.64446 * 179.72997 * 17 16 15 19 19 C 1.37664 * 119.68919 * 180.02562 * 18 17 16 20 20 C 1.38889 * 120.81604 * 0.02562 * 19 18 17 21 21 C 1.37766 * 120.57146 * 359.97165 * 20 19 18 22 22 C 1.39345 * 119.51585 * 0.02757 * 21 20 19 23 23 C 1.35355 * 119.69410 * 90.00768 * 14 13 12 24 24 O 1.21729 * 121.29664 * 359.97438 * 23 14 13 25 25 C 1.46503 * 119.99625 * 224.48242 * 9 7 2 26 26 C 1.52990 * 117.49950 * 3.28068 * 25 9 7 27 27 C 1.52996 * 117.50435 * 294.61539 * 25 9 7 28 28 H 0.97005 * 120.00101 * 354.96822 * 1 2 3 29 29 H 1.09007 * 109.46836 * 60.00267 * 12 10 9 30 30 H 1.08998 * 109.47407 * 300.00092 * 12 10 9 31 31 H 1.08998 * 109.47321 * 300.00414 * 13 12 10 32 32 H 1.08997 * 109.46807 * 60.00571 * 13 12 10 33 33 H 1.08002 * 118.31323 * 0.02562 * 15 14 13 34 34 H 1.08004 * 120.15919 * 0.02774 * 18 17 16 35 35 H 1.07995 * 119.59770 * 180.02562 * 19 18 17 36 36 H 1.07994 * 119.71582 * 179.97438 * 20 19 18 37 37 H 1.07993 * 120.24160 * 180.02562 * 21 20 19 38 38 H 1.09002 * 115.54116 * 148.94597 * 25 9 7 39 39 H 1.08998 * 117.50249 * 359.97438 * 26 25 9 40 40 H 1.09008 * 117.49843 * 145.01697 * 26 25 9 41 41 H 1.08995 * 117.50197 * 214.98214 * 27 25 9 42 42 H 1.09001 * 117.49557 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2261 0.2896 9 7 1.3736 -2.3618 -0.3658 10 6 0.5767 -2.3787 -1.4526 11 8 0.4212 -1.3689 -2.1064 12 6 -0.1211 -3.6522 -1.8555 13 6 -0.9569 -3.4001 -3.1120 14 7 -1.6348 -4.6382 -3.5040 15 6 -1.0248 -5.4972 -4.3618 16 7 -1.5573 -6.6151 -4.7522 17 6 -2.7869 -7.0026 -4.3301 18 6 -3.3626 -8.2022 -4.7539 19 6 -4.6133 -8.5558 -4.3005 20 6 -5.3119 -7.7336 -3.4259 21 6 -4.7650 -6.5453 -2.9935 22 6 -3.5001 -6.1689 -3.4406 23 6 -2.8657 -4.9133 -3.0127 24 8 -3.4259 -4.1505 -2.2471 25 6 1.5611 -3.5813 0.4242 26 6 2.4157 -3.4792 1.6890 27 6 2.9615 -4.1967 0.4520 28 1 -0.4850 0.8368 0.0737 29 1 -0.7728 -3.9811 -1.0460 30 1 0.6209 -4.4237 -2.0610 31 1 -1.6989 -2.6287 -2.9061 32 1 -0.3056 -3.0710 -3.9216 33 1 -0.0445 -5.2390 -4.7345 34 1 -2.8290 -8.8495 -5.4342 35 1 -5.0570 -9.4841 -4.6289 36 1 -6.2922 -8.0283 -3.0817 37 1 -5.3127 -5.9103 -2.3131 38 1 0.7111 -4.2633 0.4447 39 1 2.8388 -2.5048 1.9333 40 1 2.1282 -4.0944 2.5417 41 1 3.0329 -5.2836 0.4912 42 1 3.7433 -3.6945 -0.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058328064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:27 Heat of formation + Delta-G solvation = 3.782200 kcal Electronic energy + Delta-G solvation = -27268.281469 eV Core-core repulsion = 23407.070752 eV Total energy + Delta-G solvation = -3861.210717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.68331 -40.49574 -39.56408 -38.61814 -37.83640 -35.78690 -34.77909 -33.05260 -32.56017 -31.60518 -30.97813 -27.62394 -25.97954 -25.71622 -24.01453 -23.11102 -22.94830 -22.77986 -21.01933 -19.93068 -19.69530 -18.74966 -17.95737 -17.73670 -17.06513 -16.79398 -16.41381 -16.21751 -16.06741 -15.87142 -15.76172 -15.24059 -15.00055 -14.81423 -14.53298 -14.40333 -14.21292 -14.08327 -13.58778 -12.99698 -12.95562 -12.87383 -12.78539 -12.74370 -12.64692 -12.28743 -12.17042 -12.04597 -11.68098 -11.41492 -11.27117 -11.08490 -11.02180 -10.74866 -10.16994 -10.01436 -9.10597 -8.99530 -8.21047 -6.00764 -0.46596 -0.21609 1.10858 1.30828 1.36550 1.42882 1.51308 1.78083 2.20846 2.38065 2.92735 3.00996 3.08007 3.11764 3.23368 3.33360 3.69158 3.75209 3.83241 3.89113 4.04827 4.08837 4.12428 4.26387 4.27171 4.34063 4.39792 4.51666 4.55546 4.68420 4.82466 4.88591 4.94105 5.03159 5.10249 5.17193 5.27300 5.31372 5.40593 5.45208 5.49190 5.56619 5.83376 6.18499 6.54342 6.81759 7.01842 7.15561 7.67492 8.31241 8.87336 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.003048 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.675176 B = 9183.449324 C = 9661.994167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.020 3.980 3 Si 0.972 3.028 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.353 4.353 8 H 0.081 0.919 9 N -0.442 5.442 10 C 0.474 3.526 11 O -0.583 6.583 12 C -0.126 4.126 13 C 0.127 3.873 14 N -0.540 5.540 15 C 0.381 3.619 16 N -0.534 5.534 17 C 0.135 3.865 18 C -0.116 4.116 19 C -0.062 4.062 20 C -0.132 4.132 21 C -0.063 4.063 22 C -0.222 4.222 23 C 0.529 3.471 24 O -0.554 6.554 25 C 0.040 3.960 26 C -0.174 4.174 27 C -0.170 4.170 28 H 0.258 0.742 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.243 0.757 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -20.454 -8.050 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.480 4.480 8 H 0.099 0.901 9 N -0.163 5.163 10 C 0.263 3.737 11 O -0.465 6.465 12 C -0.168 4.168 13 C 0.005 3.995 14 N -0.260 5.260 15 C 0.095 3.905 16 N -0.254 5.254 17 C 0.026 3.974 18 C -0.135 4.135 19 C -0.080 4.080 20 C -0.150 4.150 21 C -0.083 4.083 22 C -0.228 4.228 23 C 0.324 3.676 24 O -0.431 6.431 25 C -0.065 4.065 26 C -0.212 4.212 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.259 0.741 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.180 0.820 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.138 -19.978 -8.471 22.090 hybrid contribution -0.347 2.169 1.065 2.441 sum -4.485 -17.808 -7.406 19.801 Atomic orbital electron populations 1.69972 1.08149 1.27543 1.45330 1.26113 0.95453 1.02801 0.94266 0.85232 0.79369 0.78724 0.77007 1.17808 1.22064 1.20257 1.19142 0.94679 0.84853 1.49355 0.90108 1.42994 1.43729 1.07910 1.21644 1.20327 0.82653 0.89432 0.81299 1.90503 1.64267 1.36820 1.54870 1.21709 0.99520 0.97548 0.97978 1.21486 0.96308 0.83321 0.98414 1.46785 1.16765 1.22047 1.40420 1.25658 0.98178 0.83256 0.83423 1.68745 1.12264 1.15306 1.29054 1.19199 0.90051 0.95216 0.92932 1.21211 0.96345 0.94430 1.01519 1.21771 0.92862 0.99979 0.93420 1.21562 1.01844 0.93183 0.98426 1.21180 0.92514 0.97280 0.97331 1.20706 0.99678 0.96086 1.06311 1.19035 0.81074 0.87026 0.80509 1.90876 1.64418 1.51620 1.36205 1.21967 0.94982 0.90699 0.98847 1.23127 1.03726 1.02261 0.92068 1.23328 0.96335 1.00420 1.00812 0.93272 0.91467 0.86341 0.91706 0.85678 0.74101 0.82319 0.80789 0.81997 0.85718 0.86782 0.89873 0.86900 0.85761 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.12 11.74 21.66 0.25 -53.86 16 2 C 0.02 1.12 4.39 84.93 0.37 1.49 16 3 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 4 H -0.25 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.35 -19.19 7.91 84.04 0.66 -18.53 16 8 H 0.08 4.23 7.27 -2.91 -0.02 4.20 16 9 N -0.44 -21.82 2.83 -613.14 -1.74 -23.56 16 10 C 0.47 23.48 6.96 87.66 0.61 24.09 16 11 O -0.58 -33.86 13.75 -3.08 -0.04 -33.90 16 12 C -0.13 -4.62 4.64 29.85 0.14 -4.48 16 13 C 0.13 4.30 4.65 86.38 0.40 4.70 16 14 N -0.54 -15.72 2.61 -647.84 -1.69 -17.41 16 15 C 0.38 8.17 11.41 180.19 2.06 10.22 16 16 N -0.53 -12.32 10.37 -191.92 -1.99 -14.31 16 17 C 0.14 3.29 6.63 39.63 0.26 3.56 16 18 C -0.12 -1.99 10.03 22.47 0.23 -1.77 16 19 C -0.06 -0.78 10.00 22.29 0.22 -0.56 16 20 C -0.13 -2.09 10.02 22.31 0.22 -1.86 16 21 C -0.06 -1.55 9.68 22.42 0.22 -1.34 16 22 C -0.22 -6.40 5.89 -19.96 -0.12 -6.51 16 23 C 0.53 18.44 7.66 86.46 0.66 19.10 16 24 O -0.55 -24.08 16.32 -4.44 -0.07 -24.15 16 25 C 0.04 1.53 5.87 44.99 0.26 1.79 16 26 C -0.17 -5.92 9.80 30.62 0.30 -5.62 16 27 C -0.17 -5.11 10.36 30.62 0.32 -4.79 16 28 H 0.26 15.48 8.32 -92.70 -0.77 14.71 16 29 H 0.07 2.65 7.57 -2.38 -0.02 2.64 16 30 H 0.12 3.35 8.11 -2.39 -0.02 3.33 16 31 H 0.06 2.79 7.42 -2.39 -0.02 2.77 16 32 H 0.13 3.59 7.94 -2.39 -0.02 3.57 16 33 H 0.24 2.87 7.98 -2.91 -0.02 2.85 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.12 3.23 7.83 -2.91 -0.02 3.21 16 38 H 0.11 3.98 6.96 -2.39 -0.02 3.97 16 39 H 0.08 3.25 6.73 -2.39 -0.02 3.23 16 40 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -83.23 359.18 4.62 -78.60 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.05 Total: 21.37 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.82 Total: 19.49 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -5.16 Total: -109.15 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -0.11 Total: -58.05 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -83.23 4.62 -78.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.384 kcal (2) G-P(sol) polarization free energy of solvation -83.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds