Wall clock time and date at job start Fri Apr 10 2020 14:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46960 * 310.83072 * 3 2 1 5 5 C 1.37105 * 120.00199 * 264.22807 * 4 3 2 6 6 H 1.07994 * 120.00083 * 197.72828 * 5 4 3 7 7 C 1.38949 * 119.99647 * 17.73078 * 5 4 3 8 8 N 1.31419 * 119.99904 * 21.41726 * 7 5 4 9 9 Si 1.86797 * 119.99826 * 201.41509 * 7 5 4 10 10 H 1.48492 * 109.47151 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46901 * 120.00270 * 9 7 5 12 12 H 1.48510 * 109.47038 * 239.99901 * 9 7 5 13 13 C 1.34775 * 119.99816 * 84.23598 * 4 3 2 14 14 O 1.21295 * 119.99958 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00198 * 359.97438 * 13 4 3 16 16 N 1.46503 * 109.47138 * 180.02562 * 15 13 4 17 17 C 1.34774 * 119.99771 * 180.27207 * 16 15 13 18 18 O 1.21555 * 120.00318 * 359.72427 * 17 16 15 19 19 C 1.47844 * 120.00241 * 179.72003 * 17 16 15 20 20 C 1.39594 * 120.18364 * 0.02562 * 19 17 16 21 21 C 1.37796 * 119.78728 * 179.97438 * 20 19 17 22 22 C 1.38673 * 120.41335 * 0.02562 * 21 20 19 23 23 C 1.38375 * 120.07570 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99397 * 359.74479 * 23 22 21 25 25 C 1.51393 * 109.74439 * 180.02562 * 23 22 21 26 26 C 1.54337 * 105.16980 * 342.78086 * 25 23 22 27 27 C 1.51423 * 130.21927 * 180.02562 * 22 21 20 28 28 H 1.09002 * 109.46812 * 190.83453 * 3 2 1 29 29 H 1.08995 * 109.47512 * 70.83473 * 3 2 1 30 30 H 0.96998 * 119.99466 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47386 * 59.99502 * 15 13 4 32 32 H 1.09003 * 109.46950 * 300.00009 * 15 13 4 33 33 H 0.97000 * 120.00191 * 359.97438 * 16 15 13 34 34 H 1.08000 * 120.10855 * 359.97438 * 20 19 17 35 35 H 1.08009 * 119.79801 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.95026 * 180.25254 * 24 23 22 37 37 H 1.09002 * 110.30070 * 223.85938 * 25 23 22 38 38 H 1.09002 * 110.38542 * 101.74783 * 25 23 22 39 39 H 1.09003 * 110.82032 * 268.17710 * 26 25 23 40 40 H 1.08997 * 110.98675 * 144.71985 * 26 25 23 41 41 H 1.09004 * 110.29872 * 316.10643 * 27 22 21 42 42 H 1.08997 * 110.30146 * 78.25384 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.9022 1.0451 5 6 3.4376 -0.4048 2.2764 6 1 4.0542 -0.9893 2.9431 7 6 2.9896 0.8513 2.6666 8 7 1.9356 1.3819 2.0880 9 14 3.8853 1.7856 4.0134 10 1 5.0311 0.9758 4.4996 11 1 4.3841 3.0758 3.4731 12 1 2.9523 2.0478 5.1386 13 6 3.2114 -2.2218 0.7961 14 8 3.6164 -2.9693 1.6612 15 6 2.8364 -2.7686 -0.5572 16 7 3.0484 -4.2181 -0.5741 17 6 2.7833 -4.9249 -1.6905 18 8 2.3636 -4.3606 -2.6819 19 6 3.0032 -6.3868 -1.7096 20 6 3.4847 -7.0391 -0.5732 21 6 3.6861 -8.4020 -0.5999 22 6 3.4139 -9.1295 -1.7487 23 6 2.9364 -8.4887 -2.8784 24 6 2.7252 -7.1227 -2.8609 25 6 2.7210 -9.4979 -3.9861 26 6 3.5261 -10.7437 -3.5598 27 6 3.5507 -10.6125 -2.0222 28 1 2.9709 1.0102 0.1932 29 1 2.9716 -0.3365 -0.9706 30 1 1.6227 2.2586 2.3606 31 1 3.4562 -2.3014 -1.3224 32 1 1.7869 -2.5529 -0.7581 33 1 3.3837 -4.6685 0.2169 34 1 3.6987 -6.4773 0.3240 35 1 4.0590 -8.9067 0.2791 36 1 2.3487 -6.6240 -3.7417 37 1 3.0991 -9.1085 -4.9314 38 1 1.6628 -9.7438 -4.0752 39 1 4.5363 -10.7105 -3.9679 40 1 3.0179 -11.6593 -3.8622 41 1 4.4957 -10.9845 -1.6262 42 1 2.7150 -11.1568 -1.5825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125610795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:41 Heat of formation + Delta-G solvation = -9.197208 kcal Electronic energy + Delta-G solvation = -26310.803462 eV Core-core repulsion = 22449.029915 eV Total energy + Delta-G solvation = -3861.773546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56674 -39.46973 -38.57844 -35.98346 -35.67430 -34.60510 -33.97236 -32.01872 -31.63998 -29.83448 -27.90725 -27.62112 -27.20982 -24.63871 -23.02134 -22.18325 -21.08556 -19.91051 -19.62976 -18.10636 -17.70538 -16.53589 -16.32643 -16.10249 -15.88465 -15.38817 -15.19139 -15.01740 -14.70106 -14.43979 -13.91554 -13.88350 -13.61865 -13.25614 -13.18182 -13.08462 -12.79121 -12.51148 -12.28240 -12.09944 -11.91452 -11.78057 -11.66858 -11.50367 -11.35422 -11.22992 -11.15440 -10.97678 -10.65697 -10.46649 -10.41601 -9.87864 -9.39514 -9.03457 -8.92589 -8.85791 -8.66551 -8.19159 -6.61853 -4.12139 0.75125 1.21661 2.86685 3.00361 3.13354 3.19632 3.26650 3.42767 3.69707 3.77970 3.92835 4.04329 4.12105 4.25117 4.63467 4.66844 4.71943 4.79154 4.80820 4.93616 4.98980 5.11579 5.18548 5.34544 5.38239 5.40962 5.47301 5.49303 5.60555 5.67971 5.77255 5.82484 5.84195 5.92764 6.02738 6.17640 6.24373 6.38763 6.41630 6.52053 6.73512 7.36596 7.69883 7.73540 8.12782 8.35349 8.68418 8.83805 9.04613 9.53059 10.43849 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002404 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.961704 B =11645.689450 C =12472.770153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.242 3.758 3 C 0.217 3.783 4 N -0.432 5.432 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.872 5.872 9 Si 0.930 3.070 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.444 3.556 14 O -0.574 6.574 15 C 0.104 3.896 16 N -0.704 5.704 17 C 0.557 3.443 18 O -0.544 6.544 19 C -0.128 4.128 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.047 4.047 25 C -0.081 4.081 26 C -0.121 4.121 27 C -0.085 4.085 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.275 0.725 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.411 0.589 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 -17.800 -9.800 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.076 4.076 3 C 0.090 3.910 4 N -0.151 5.151 5 C -0.443 4.443 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.510 5.510 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.232 3.768 14 O -0.458 6.458 15 C -0.024 4.024 16 N -0.358 5.358 17 C 0.344 3.656 18 O -0.423 6.423 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.066 4.066 25 C -0.118 4.118 26 C -0.158 4.158 27 C -0.122 4.122 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.250 0.750 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.947 -17.536 -10.009 20.574 hybrid contribution 0.716 0.688 1.236 1.585 sum 4.663 -16.848 -8.773 19.560 Atomic orbital electron populations 1.80914 1.13530 1.09633 1.10483 1.29203 0.95295 0.92020 0.91100 1.18820 0.81783 0.99373 0.91068 1.43580 1.55582 1.03913 1.12047 1.19779 1.30211 1.00796 0.93495 0.87089 1.25338 0.94886 0.97946 0.98939 1.69880 1.19547 1.18205 1.43338 0.85809 0.79536 0.79151 0.79921 1.19016 1.20321 1.20813 1.19934 0.85024 0.82741 0.89099 1.90520 1.51147 1.56540 1.47598 1.21133 1.02624 0.81039 0.97581 1.45622 1.66560 1.08032 1.15568 1.18182 0.77870 0.86586 0.82940 1.90757 1.46040 1.71565 1.33933 1.19787 1.04857 0.93069 0.95399 1.21330 0.96685 0.94595 0.97508 1.20562 1.01594 0.93465 0.97647 1.20834 0.97225 0.95964 0.93711 1.20519 1.00565 0.93421 0.96520 1.20678 0.96213 0.92154 0.97597 1.21041 1.00967 0.93091 0.96710 1.22297 1.00802 0.97837 0.94877 1.21114 1.02673 0.91823 0.96574 0.85129 0.89442 0.91431 0.89229 0.89567 0.75025 0.84850 0.85525 0.84808 0.90501 0.90089 0.90859 0.90458 0.90458 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.11 18.54 42.15 0.78 -10.33 16 2 C 0.24 5.31 12.95 -20.76 -0.27 5.05 16 3 C 0.22 4.18 4.91 -6.83 -0.03 4.14 16 4 N -0.43 -9.66 2.60 -117.93 -0.31 -9.96 16 5 C -0.32 -7.78 9.32 -14.93 -0.14 -7.92 16 6 H 0.11 2.88 7.39 -52.49 -0.39 2.49 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.71 16 8 N -0.87 -21.33 9.48 55.50 0.53 -20.81 16 9 Si 0.93 18.93 29.60 -169.99 -5.03 13.89 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.44 9.57 7.63 -10.99 -0.08 9.49 16 14 O -0.57 -13.81 15.32 5.54 0.08 -13.72 16 15 C 0.10 1.87 4.76 -5.19 -0.02 1.84 16 16 N -0.70 -11.83 5.48 -62.43 -0.34 -12.17 16 17 C 0.56 9.28 7.77 -12.33 -0.10 9.18 16 18 O -0.54 -10.46 16.35 5.32 0.09 -10.37 16 19 C -0.13 -1.79 5.87 -105.02 -0.62 -2.40 16 20 C -0.08 -0.99 9.54 -39.24 -0.37 -1.37 16 21 C -0.11 -1.18 10.02 -39.58 -0.40 -1.58 16 22 C -0.08 -0.76 6.14 -104.06 -0.64 -1.40 16 23 C -0.11 -1.17 6.13 -104.23 -0.64 -1.81 16 24 C -0.05 -0.61 9.59 -39.14 -0.38 -0.98 16 25 C -0.08 -0.62 6.77 -26.84 -0.18 -0.80 16 26 C -0.12 -0.73 7.08 -25.33 -0.18 -0.91 16 27 C -0.08 -0.59 6.77 -26.83 -0.18 -0.77 16 28 H 0.13 2.54 6.46 -51.93 -0.34 2.21 16 29 H 0.09 1.30 6.68 -51.93 -0.35 0.95 16 30 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.09 1.43 7.41 -51.93 -0.39 1.05 16 32 H 0.09 1.62 7.51 -51.93 -0.39 1.23 16 33 H 0.41 6.62 5.48 -40.82 -0.22 6.40 16 34 H 0.13 1.49 6.41 -52.49 -0.34 1.15 16 35 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 1.70 7.64 -52.49 -0.40 1.30 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -31.37 359.01 -8.01 -39.38 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.90 Total: 8.21 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -4.31 Total: 10.46 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.66 Total: -53.27 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.09 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.37 -8.01 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.183 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds