Wall clock time and date at job start Fri Apr 10 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46960 * 310.83072 * 3 2 1 5 5 C 1.37105 * 120.00199 * 264.22807 * 4 3 2 6 6 H 1.07994 * 120.00083 * 197.72828 * 5 4 3 7 7 C 1.38949 * 119.99647 * 17.73078 * 5 4 3 8 8 N 1.31419 * 119.99904 * 21.41726 * 7 5 4 9 9 Si 1.86797 * 119.99826 * 201.41509 * 7 5 4 10 10 H 1.48492 * 109.47151 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46901 * 120.00270 * 9 7 5 12 12 H 1.48510 * 109.47038 * 239.99901 * 9 7 5 13 13 C 1.34775 * 119.99816 * 84.23598 * 4 3 2 14 14 O 1.21295 * 119.99958 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00198 * 359.97438 * 13 4 3 16 16 N 1.46503 * 109.47138 * 180.02562 * 15 13 4 17 17 C 1.34774 * 119.99771 * 180.27207 * 16 15 13 18 18 O 1.21555 * 120.00318 * 359.72427 * 17 16 15 19 19 C 1.47844 * 120.00241 * 179.72003 * 17 16 15 20 20 C 1.39594 * 120.18364 * 0.02562 * 19 17 16 21 21 C 1.37796 * 119.78728 * 179.97438 * 20 19 17 22 22 C 1.38673 * 120.41335 * 0.02562 * 21 20 19 23 23 C 1.38375 * 120.07570 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99397 * 359.74479 * 23 22 21 25 25 C 1.51393 * 109.74439 * 180.02562 * 23 22 21 26 26 C 1.54337 * 105.16980 * 342.78086 * 25 23 22 27 27 C 1.51423 * 130.21927 * 180.02562 * 22 21 20 28 28 H 1.09002 * 109.46812 * 190.83453 * 3 2 1 29 29 H 1.08995 * 109.47512 * 70.83473 * 3 2 1 30 30 H 0.96998 * 119.99466 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47386 * 59.99502 * 15 13 4 32 32 H 1.09003 * 109.46950 * 300.00009 * 15 13 4 33 33 H 0.97000 * 120.00191 * 359.97438 * 16 15 13 34 34 H 1.08000 * 120.10855 * 359.97438 * 20 19 17 35 35 H 1.08009 * 119.79801 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.95026 * 180.25254 * 24 23 22 37 37 H 1.09002 * 110.30070 * 223.85938 * 25 23 22 38 38 H 1.09002 * 110.38542 * 101.74783 * 25 23 22 39 39 H 1.09003 * 110.82032 * 268.17710 * 26 25 23 40 40 H 1.08997 * 110.98675 * 144.71985 * 26 25 23 41 41 H 1.09004 * 110.29872 * 316.10643 * 27 22 21 42 42 H 1.08997 * 110.30146 * 78.25384 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.9022 1.0451 5 6 3.4376 -0.4048 2.2764 6 1 4.0542 -0.9893 2.9431 7 6 2.9896 0.8513 2.6666 8 7 1.9356 1.3819 2.0880 9 14 3.8853 1.7856 4.0134 10 1 5.0311 0.9758 4.4996 11 1 4.3841 3.0758 3.4731 12 1 2.9523 2.0478 5.1386 13 6 3.2114 -2.2218 0.7961 14 8 3.6164 -2.9693 1.6612 15 6 2.8364 -2.7686 -0.5572 16 7 3.0484 -4.2181 -0.5741 17 6 2.7833 -4.9249 -1.6905 18 8 2.3636 -4.3606 -2.6819 19 6 3.0032 -6.3868 -1.7096 20 6 3.4847 -7.0391 -0.5732 21 6 3.6861 -8.4020 -0.5999 22 6 3.4139 -9.1295 -1.7487 23 6 2.9364 -8.4887 -2.8784 24 6 2.7252 -7.1227 -2.8609 25 6 2.7210 -9.4979 -3.9861 26 6 3.5261 -10.7437 -3.5598 27 6 3.5507 -10.6125 -2.0222 28 1 2.9709 1.0102 0.1932 29 1 2.9716 -0.3365 -0.9706 30 1 1.6227 2.2586 2.3606 31 1 3.4562 -2.3014 -1.3224 32 1 1.7869 -2.5529 -0.7581 33 1 3.3837 -4.6685 0.2169 34 1 3.6987 -6.4773 0.3240 35 1 4.0590 -8.9067 0.2791 36 1 2.3487 -6.6240 -3.7417 37 1 3.0991 -9.1085 -4.9314 38 1 1.6628 -9.7438 -4.0752 39 1 4.5363 -10.7105 -3.9679 40 1 3.0179 -11.6593 -3.8622 41 1 4.4957 -10.9845 -1.6262 42 1 2.7150 -11.1568 -1.5825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125610795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:40 Heat of formation + Delta-G solvation = -27.558880 kcal Electronic energy + Delta-G solvation = -26311.599683 eV Core-core repulsion = 22449.029915 eV Total energy + Delta-G solvation = -3862.569768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61448 -40.84228 -39.96621 -37.73716 -36.48763 -36.33923 -35.47490 -33.83538 -32.47525 -30.84143 -29.40565 -28.76536 -28.27073 -26.30437 -24.03521 -23.10890 -21.69973 -21.29081 -21.06333 -19.86866 -18.95161 -18.18590 -17.81609 -17.28239 -16.76168 -16.61575 -16.40341 -16.18786 -15.95539 -15.91455 -15.45429 -15.22637 -14.79631 -14.63711 -14.31083 -14.10488 -13.93104 -13.71226 -13.69585 -13.48539 -13.34980 -13.13286 -12.92456 -12.83034 -12.49550 -12.38698 -12.19648 -12.06440 -12.01156 -11.84552 -11.67575 -11.21856 -11.17035 -10.63911 -10.33461 -10.00968 -9.87072 -9.53417 -8.44904 -6.01666 -0.21229 0.34874 1.34399 1.49089 1.60452 1.68021 1.74913 1.86384 2.07128 2.20214 2.34502 2.78828 2.94810 3.00408 3.39022 3.50778 3.59285 3.70202 3.79181 4.00175 4.14260 4.21247 4.24905 4.28833 4.30971 4.36974 4.55277 4.67589 4.72506 4.84195 4.88315 4.97753 5.02329 5.10830 5.14995 5.20420 5.30719 5.32859 5.41955 5.46339 5.56605 5.89340 5.93685 6.29241 6.40798 6.94305 7.01911 7.02847 7.25223 7.75277 8.59033 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002404 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.961704 B =11645.689450 C =12472.770153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.255 3.745 3 C 0.217 3.783 4 N -0.442 5.442 5 C -0.340 4.340 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.991 3.009 10 H -0.268 1.268 11 H -0.264 1.264 12 H -0.290 1.290 13 C 0.443 3.557 14 O -0.604 6.604 15 C 0.113 3.887 16 N -0.704 5.704 17 C 0.558 3.442 18 O -0.576 6.576 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.117 4.117 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.062 4.062 25 C -0.084 4.084 26 C -0.115 4.115 27 C -0.084 4.084 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.276 0.724 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.414 0.586 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -19.604 -10.333 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.063 4.063 3 C 0.091 3.909 4 N -0.162 5.162 5 C -0.467 4.467 6 H 0.108 0.892 7 C -0.197 4.197 8 N -0.528 5.528 9 Si 0.815 3.185 10 H -0.192 1.192 11 H -0.188 1.188 12 H -0.216 1.216 13 C 0.233 3.767 14 O -0.489 6.489 15 C -0.014 4.014 16 N -0.358 5.358 17 C 0.347 3.653 18 O -0.457 6.457 19 C -0.155 4.155 20 C -0.107 4.107 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.152 4.152 27 C -0.121 4.121 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.022 -19.343 -10.556 22.601 hybrid contribution 0.376 1.139 1.404 1.846 sum 5.398 -18.204 -9.153 21.078 Atomic orbital electron populations 1.80910 1.14800 1.10975 1.11827 1.29733 0.95838 0.90823 0.89904 1.19161 0.80111 0.99221 0.92454 1.43715 1.55646 1.04623 1.12167 1.19712 1.30973 1.01419 0.94597 0.89198 1.25969 0.95043 0.97998 1.00648 1.69957 1.20120 1.18365 1.44343 0.84909 0.78072 0.78279 0.77240 1.19235 1.18835 1.21641 1.20473 0.83814 0.82430 0.90017 1.90494 1.52191 1.57293 1.48934 1.21013 1.02551 0.81975 0.95882 1.45628 1.66706 1.07551 1.15923 1.18607 0.76819 0.87710 0.82134 1.90724 1.47643 1.72459 1.34895 1.19659 1.07492 0.91477 0.96912 1.21423 0.96729 0.95600 0.96934 1.20870 1.00925 0.92773 0.98872 1.21330 0.95304 0.97828 0.92980 1.20894 0.99799 0.92895 0.98150 1.20729 0.96972 0.93350 0.97012 1.21166 1.01929 0.93027 0.95921 1.22334 1.01046 0.97746 0.94107 1.21238 1.04028 0.89448 0.97384 0.85061 0.84538 0.91355 0.86711 0.90220 0.74682 0.84620 0.82996 0.85744 0.90025 0.89263 0.90398 0.88304 0.88893 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.18 18.54 20.01 0.37 -23.81 16 2 C 0.25 11.11 12.95 89.44 1.16 12.26 16 3 C 0.22 8.15 4.91 84.57 0.42 8.57 16 4 N -0.44 -19.75 2.60 -645.41 -1.68 -21.42 16 5 C -0.34 -16.88 9.32 84.04 0.78 -16.10 16 6 H 0.09 4.78 7.39 -2.91 -0.02 4.76 16 7 C 0.01 0.30 4.87 84.93 0.41 0.71 16 8 N -0.89 -43.28 9.48 21.66 0.21 -43.07 16 9 Si 0.99 38.60 29.60 68.60 2.03 40.63 16 10 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 11 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 12 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.44 19.18 7.63 87.66 0.67 19.85 16 14 O -0.60 -29.48 15.32 -3.08 -0.05 -29.53 16 15 C 0.11 4.05 4.76 85.63 0.41 4.46 16 16 N -0.70 -23.89 5.48 -469.70 -2.57 -26.47 16 17 C 0.56 18.95 7.77 86.79 0.67 19.63 16 18 O -0.58 -22.61 16.35 -3.89 -0.06 -22.67 16 19 C -0.15 -4.32 5.87 -20.12 -0.12 -4.44 16 20 C -0.09 -2.09 9.54 22.49 0.21 -1.88 16 21 C -0.12 -2.21 10.02 22.27 0.22 -1.98 16 22 C -0.07 -1.31 6.14 -19.50 -0.12 -1.42 16 23 C -0.12 -2.35 6.13 -19.61 -0.12 -2.47 16 24 C -0.06 -1.59 9.59 22.56 0.22 -1.37 16 25 C -0.08 -1.10 6.77 30.52 0.21 -0.89 16 26 C -0.12 -1.00 7.08 31.50 0.22 -0.78 16 27 C -0.08 -0.87 6.77 30.53 0.21 -0.67 16 28 H 0.13 4.98 6.46 -2.39 -0.02 4.97 16 29 H 0.14 3.74 6.68 -2.39 -0.02 3.72 16 30 H 0.28 12.95 8.31 -92.71 -0.77 12.17 16 31 H 0.12 3.51 7.41 -2.39 -0.02 3.49 16 32 H 0.08 3.00 7.51 -2.39 -0.02 2.98 16 33 H 0.41 13.57 5.48 -92.71 -0.51 13.06 16 34 H 0.14 3.04 6.41 -2.91 -0.02 3.02 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.12 3.32 7.64 -2.91 -0.02 3.30 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.66 359.01 4.27 -64.39 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.57 Total: 28.46 kcal Atomic # 6 Polarization: 28.03 SS G_CDS: 5.45 Total: 33.48 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.68 Total: -114.77 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.11 Total: -52.20 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -68.66 4.27 -64.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.833 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds