Wall clock time and date at job start Fri Apr 10 2020 14:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47361 * 270.00135 * 3 2 1 5 5 H 1.48496 * 109.46835 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.47092 * 150.00071 * 3 2 1 7 7 C 1.38956 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99396 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99401 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99551 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46644 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99822 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00169 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00121 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47458 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47458 * 179.97438 * 17 16 14 19 19 C 1.36610 * 120.92289 * 264.97958 * 18 17 16 20 20 C 1.39298 * 119.92899 * 180.02562 * 19 18 17 21 21 N 1.31108 * 121.75444 * 359.97438 * 20 19 18 22 22 C 1.33659 * 121.31783 * 0.02562 * 21 20 19 23 23 C 1.40601 * 121.07938 * 179.97438 * 22 21 20 24 24 C 1.36075 * 119.74156 * 179.97438 * 23 22 21 25 25 C 1.39361 * 121.07672 * 359.71370 * 24 23 22 26 26 C 1.36133 * 120.86948 * 0.57407 * 25 24 23 27 27 C 1.40441 * 119.60957 * 359.44833 * 26 25 24 28 28 H 0.96996 * 119.99839 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00168 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47150 * 60.00717 * 12 10 9 31 31 H 1.08999 * 109.47673 * 300.00052 * 12 10 9 32 32 H 0.96998 * 120.00371 * 359.97438 * 13 12 10 33 33 H 1.08996 * 109.47176 * 59.99943 * 16 14 13 34 34 H 1.09003 * 109.47535 * 300.00264 * 16 14 13 35 35 H 1.09004 * 109.46810 * 60.00080 * 17 16 14 36 36 H 1.09003 * 109.47004 * 300.00639 * 17 16 14 37 37 H 1.07992 * 120.03871 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.11739 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.13176 * 359.97438 * 23 22 21 40 40 H 1.08002 * 119.46227 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.56884 * 180.27959 * 25 24 23 42 42 H 1.08002 * 120.19708 * 179.73256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1958 -5.9764 -0.0007 14 6 1.7466 -7.2471 -0.0009 15 8 0.5542 -7.4688 -0.0009 16 6 2.7259 -8.3926 -0.0010 17 6 1.9610 -9.7176 -0.0006 18 6 2.9402 -10.8630 -0.0014 19 6 3.3176 -11.4632 -1.1691 20 6 4.2239 -12.5208 -1.1458 21 7 4.7354 -12.9665 -0.0239 22 6 4.4081 -12.4237 1.1529 23 6 4.9593 -12.9060 2.3531 24 6 4.6073 -12.3327 3.5359 25 6 3.7105 -11.2669 3.5801 26 6 3.1518 -10.7765 2.4396 27 6 3.4918 -11.3439 1.2007 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6169 -4.9209 -0.8898 31 1 0.6174 -4.9205 0.8902 32 1 3.1495 -5.7992 -0.0018 33 1 3.3525 -8.3349 0.8889 34 1 3.3526 -8.3347 -0.8910 35 1 1.3340 -9.7755 -0.8904 36 1 1.3345 -9.7752 0.8896 37 1 2.9132 -11.1187 -2.1093 38 1 4.5128 -12.9860 -2.0767 39 1 5.6593 -13.7283 2.3363 40 1 5.0338 -12.7065 4.4551 41 1 3.4517 -10.8273 4.5319 42 1 2.4547 -9.9529 2.4869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343499330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:56 Heat of formation + Delta-G solvation = -54.529485 kcal Electronic energy + Delta-G solvation = -25591.126697 eV Core-core repulsion = 21727.387396 eV Total energy + Delta-G solvation = -3863.739301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91937 -40.97755 -39.90784 -38.00688 -36.41024 -36.16521 -35.26717 -33.39014 -32.48639 -31.45617 -30.89126 -29.33895 -26.85856 -25.70996 -24.56222 -24.27877 -21.87684 -21.38944 -21.19287 -20.06564 -19.02976 -18.55439 -18.42681 -17.38815 -17.23711 -16.93269 -16.82911 -16.32300 -15.98130 -15.73690 -15.57354 -15.34495 -15.22826 -14.92894 -14.71369 -14.47441 -13.95872 -13.87057 -13.59497 -13.49529 -13.37151 -13.21823 -12.90950 -12.73452 -12.48400 -12.46544 -12.36060 -12.13322 -11.93045 -11.57725 -11.28627 -10.95819 -10.56965 -10.44219 -10.19614 -10.08518 -9.71341 -9.17933 -8.51883 -6.02079 -0.56627 -0.11531 1.00157 1.35858 1.42614 1.54983 1.59829 1.90606 1.99263 2.08102 2.32111 3.11567 3.14971 3.15337 3.37784 3.47916 3.69387 3.79604 3.87646 3.99856 4.10981 4.14837 4.25989 4.27631 4.31316 4.43581 4.44113 4.53422 4.57923 4.63573 4.71707 4.86991 5.06761 5.10069 5.15824 5.20325 5.29277 5.37963 5.45683 5.54951 5.63701 5.91112 5.94601 6.45156 6.53710 6.95860 7.02838 7.17079 7.43840 7.93795 8.64898 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.001925 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.455619 B =14540.306226 C =14895.723600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.121 3.879 13 N -0.710 5.710 14 C 0.515 3.485 15 O -0.579 6.579 16 C -0.124 4.124 17 C -0.060 4.060 18 C -0.025 4.025 19 C -0.174 4.174 20 C 0.129 3.871 21 N -0.508 5.508 22 C 0.101 3.899 23 C -0.114 4.114 24 C -0.095 4.095 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.114 4.114 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.414 0.586 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -24.101 2.482 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.007 4.007 13 N -0.364 5.364 14 C 0.303 3.697 15 O -0.459 6.459 16 C -0.164 4.164 17 C -0.098 4.098 18 C -0.033 4.033 19 C -0.194 4.194 20 C -0.042 4.042 21 N -0.216 5.216 22 C -0.020 4.020 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.252 0.748 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.181 0.819 38 H 0.204 0.796 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.007 -24.774 2.596 25.624 hybrid contribution -0.467 1.746 -0.091 1.809 sum 5.541 -23.028 2.505 23.818 Atomic orbital electron populations 1.69675 1.06978 1.29633 1.49279 1.26132 0.96551 1.02696 0.95818 0.84872 0.77917 0.76518 0.78716 1.19557 1.19679 1.19460 1.19727 0.92943 0.83564 1.50386 0.89597 1.41865 1.09605 1.04668 1.63441 1.20480 0.88142 0.85993 0.83491 1.90474 1.15206 1.87565 1.58029 1.20768 0.91789 0.83977 1.04196 1.45795 1.11360 1.04744 1.74462 1.21116 0.89810 0.83874 0.74872 1.90690 1.18368 1.85205 1.51639 1.21601 0.97578 0.90501 1.06673 1.20297 0.95299 0.89052 1.05156 1.20242 0.95013 0.95551 0.92511 1.22121 0.99750 0.97860 0.99669 1.23470 0.91312 0.92632 0.96835 1.68060 1.25396 1.29560 0.98624 1.19232 0.95727 0.93799 0.93196 1.21023 1.00618 1.01091 0.90529 1.21269 0.96457 0.95213 0.98559 1.21307 0.96536 0.96517 0.99370 1.21290 0.99950 1.00019 0.91458 1.18924 0.99407 0.98066 0.95147 0.91069 0.76700 0.88815 0.88821 0.74801 0.87383 0.86554 0.89124 0.89987 0.81936 0.79634 0.84183 0.82585 0.83220 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.08 13.05 21.67 0.28 -47.80 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.26 29.55 68.60 2.03 43.28 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -27.62 5.29 -306.98 -1.62 -29.24 16 10 C 0.43 19.36 7.85 87.66 0.69 20.05 16 11 O -0.62 -31.48 15.24 -3.05 -0.05 -31.53 16 12 C 0.12 4.17 6.15 85.63 0.53 4.70 16 13 N -0.71 -21.20 5.53 -466.79 -2.58 -23.78 16 14 C 0.52 13.72 7.83 87.66 0.69 14.41 16 15 O -0.58 -19.00 15.98 -3.04 -0.05 -19.05 16 16 C -0.12 -2.24 5.68 29.85 0.17 -2.07 16 17 C -0.06 -1.07 4.09 29.85 0.12 -0.94 16 18 C -0.03 -0.45 5.17 -19.64 -0.10 -0.55 16 19 C -0.17 -2.64 9.70 22.14 0.21 -2.42 16 20 C 0.13 2.11 11.14 85.06 0.95 3.06 16 21 N -0.51 -11.10 10.34 -188.64 -1.95 -13.05 16 22 C 0.10 2.21 6.60 40.30 0.27 2.48 16 23 C -0.11 -2.06 9.98 22.34 0.22 -1.83 16 24 C -0.10 -1.33 9.94 22.04 0.22 -1.11 16 25 C -0.12 -1.74 9.95 22.05 0.22 -1.52 16 26 C -0.11 -1.90 9.31 22.32 0.21 -1.69 16 27 C -0.11 -2.29 5.74 -21.28 -0.12 -2.42 16 28 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 12.22 7.44 -92.71 -0.69 11.53 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.59 8.03 -2.38 -0.02 1.57 16 36 H 0.08 1.56 6.76 -2.39 -0.02 1.54 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 2.16 6.57 -2.91 -0.02 2.14 16 Total: -1.00 -70.12 365.65 1.27 -68.85 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.34 Total: 39.79 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.55 Total: 12.52 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.87 Total: -113.87 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.10 Total: -50.58 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -70.12 1.27 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343499330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.323 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds