Wall clock time and date at job start Fri Apr 10 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00335 * 3 2 1 6 6 H 1.48499 * 109.47138 * 60.00127 * 3 2 1 7 7 C 1.38815 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99999 * 198.47623 * 7 2 1 9 9 N 1.36933 * 119.99956 * 18.47985 * 7 2 1 10 10 C 1.46970 * 120.58964 * 213.05667 * 9 7 2 11 11 C 1.53374 * 108.63441 * 235.24389 * 10 9 7 12 12 N 1.46959 * 108.63679 * 310.58095 * 11 10 9 13 13 C 1.34784 * 120.59332 * 235.20117 * 12 11 10 14 14 O 1.21485 * 119.99576 * 5.84613 * 13 12 11 15 15 C 1.48290 * 119.99961 * 185.84405 * 13 12 11 16 16 C 1.35675 * 118.86982 * 225.24392 * 15 13 12 17 17 C 1.42057 * 119.93469 * 180.02562 * 16 15 13 18 18 O 1.21928 * 121.07070 * 180.02562 * 17 16 15 19 19 C 1.47224 * 117.85974 * 0.02562 * 17 16 15 20 20 C 1.39578 * 121.35702 * 180.02562 * 19 17 16 21 21 C 1.36643 * 119.69637 * 179.97438 * 20 19 17 22 22 C 1.38887 * 120.55694 * 359.97438 * 21 20 19 23 23 C 1.37718 * 120.71645 * 0.06074 * 22 21 20 24 24 C 1.39294 * 119.72054 * 359.89499 * 23 22 21 25 25 N 1.36468 * 118.86631 * 45.27125 * 15 13 12 26 26 H 0.96996 * 119.18752 * 359.97438 * 25 15 13 27 27 C 1.46969 * 118.81719 * 55.47428 * 12 11 10 28 28 C 1.46961 * 120.60062 * 33.07831 * 9 7 2 29 29 H 0.96995 * 120.00175 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.60739 * 115.50346 * 10 9 7 31 31 H 1.09000 * 109.75072 * 355.07242 * 10 9 7 32 32 H 1.08992 * 109.61010 * 190.82982 * 11 10 9 33 33 H 1.09005 * 109.60842 * 70.31989 * 11 10 9 34 34 H 1.07998 * 120.03338 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.15592 * 359.93602 * 20 19 17 36 36 H 1.08000 * 119.72680 * 179.72517 * 21 20 19 37 37 H 1.07998 * 119.64519 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.13728 * 180.02562 * 23 22 21 39 39 H 1.08999 * 109.60422 * 64.26386 * 27 12 11 40 40 H 1.08995 * 109.61079 * 184.78043 * 27 12 11 41 41 H 1.09004 * 109.61181 * 244.50211 * 28 9 7 42 42 H 1.09005 * 109.60559 * 5.00768 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0485 -1.2264 0.2959 9 7 1.3785 -2.3573 -0.3769 10 6 1.7387 -3.6418 0.2398 11 6 2.1190 -4.6291 -0.8707 12 7 1.0691 -4.6066 -1.8989 13 6 0.4480 -5.7437 -2.2699 14 8 0.6775 -6.7812 -1.6810 15 6 -0.5156 -5.7284 -3.3971 16 6 -1.7001 -6.3746 -3.2551 17 6 -2.6396 -6.3749 -4.3207 18 8 -3.7103 -6.9485 -4.2154 19 6 -2.2787 -5.6603 -5.5563 20 6 -3.1469 -5.6134 -6.6481 21 6 -2.7776 -4.9398 -7.7782 22 6 -1.5462 -4.3014 -7.8490 23 6 -0.6739 -4.3355 -6.7839 24 6 -1.0297 -5.0153 -5.6214 25 7 -0.1801 -5.0652 -4.5416 26 1 0.6791 -4.6182 -4.5948 27 6 0.7128 -3.3229 -2.5196 28 6 0.3287 -2.3350 -1.4051 29 1 -0.4850 0.8400 0.0004 30 1 0.8876 -4.0305 0.7990 31 1 2.5856 -3.5032 0.9118 32 1 2.2023 -5.6331 -0.4548 33 1 3.0704 -4.3334 -1.3130 34 1 -1.9285 -6.8883 -2.3330 35 1 -4.1060 -6.1077 -6.6003 36 1 -3.4472 -4.9069 -8.6250 37 1 -1.2695 -3.7729 -8.7493 38 1 0.2811 -3.8354 -6.8490 39 1 1.5665 -2.9365 -3.0764 40 1 -0.1326 -3.4643 -3.1928 41 1 -0.6228 -2.6305 -0.9629 42 1 0.2453 -1.3308 -1.8210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362613709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:20 Heat of formation + Delta-G solvation = 15.238138 kcal Electronic energy + Delta-G solvation = -27713.031741 eV Core-core repulsion = 23852.317791 eV Total energy + Delta-G solvation = -3860.713950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53312 -39.83957 -38.14276 -37.31123 -37.01499 -34.10991 -32.31996 -31.70579 -30.96194 -30.46321 -29.95422 -27.38479 -25.26113 -23.90165 -23.67499 -23.02997 -22.44657 -21.08596 -19.54009 -18.70961 -18.38756 -18.01463 -16.76723 -16.28270 -16.06107 -15.68572 -15.35299 -14.90666 -14.82853 -14.69435 -14.25943 -14.21629 -13.91870 -13.68305 -13.52708 -13.48618 -13.37168 -13.25334 -12.69543 -12.31301 -12.14701 -11.76590 -11.56403 -11.53645 -11.01013 -10.95058 -10.65904 -10.48121 -10.33816 -10.13782 -9.93983 -9.63342 -9.55384 -9.28274 -8.78225 -8.58127 -7.95687 -6.83684 -6.00584 -3.49248 0.39220 0.71174 1.37355 2.28130 2.65952 2.85677 3.13300 3.23761 3.33394 3.34936 3.79512 4.03871 4.25645 4.32587 4.41402 4.60122 4.84060 4.91878 5.00849 5.03009 5.17445 5.29768 5.48516 5.55217 5.57578 5.61603 5.64290 5.69394 5.77030 5.89321 5.92715 6.07574 6.11885 6.13208 6.28305 6.39294 6.56925 6.67469 6.70138 6.76468 6.91387 7.15965 7.40932 7.63399 7.75628 7.96935 8.23383 8.96423 9.58241 10.17775 11.07324 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003615 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.139709 B = 7743.619367 C = 8815.030317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.012 3.988 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.130 3.870 11 C 0.094 3.906 12 N -0.585 5.585 13 C 0.544 3.456 14 O -0.521 6.521 15 C 0.175 3.825 16 C -0.251 4.251 17 C 0.422 3.578 18 O -0.490 6.490 19 C -0.202 4.202 20 C -0.027 4.027 21 C -0.164 4.164 22 C -0.054 4.054 23 C -0.173 4.173 24 C 0.203 3.797 25 N -0.602 5.602 26 H 0.422 0.578 27 C 0.063 3.937 28 C 0.164 3.836 29 H 0.257 0.743 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -7.283 -15.274 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.188 4.188 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.003 3.997 11 C -0.029 4.029 12 N -0.317 5.317 13 C 0.329 3.671 14 O -0.397 6.397 15 C 0.064 3.936 16 C -0.279 4.279 17 C 0.309 3.691 18 O -0.372 6.372 19 C -0.206 4.206 20 C -0.045 4.045 21 C -0.183 4.183 22 C -0.073 4.073 23 C -0.194 4.194 24 C 0.099 3.901 25 N -0.217 5.217 26 H 0.260 0.740 27 C -0.061 4.061 28 C 0.037 3.963 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.296 -7.988 -14.816 16.835 hybrid contribution 0.802 1.328 -0.002 1.552 sum 0.506 -6.660 -14.818 16.253 Atomic orbital electron populations 1.70051 1.05458 1.25969 1.52226 1.25200 0.95201 0.98823 0.99626 0.86249 0.79542 0.83643 0.77462 1.20041 1.21376 1.21495 1.19163 0.93085 0.84665 1.42718 0.91500 1.43936 1.43434 1.02584 1.41100 1.21329 0.98919 0.86838 0.92624 1.22387 0.88858 1.01717 0.89924 1.48160 1.37227 1.06847 1.39436 1.18215 0.80807 0.84548 0.83564 1.90812 1.63038 1.31294 1.54511 1.20101 0.95419 0.91981 0.86097 1.22304 0.94122 1.07751 1.03674 1.18453 0.86495 0.78490 0.85707 1.90701 1.23827 1.40014 1.82608 1.20353 0.95070 1.06302 0.98902 1.20860 0.98412 0.94408 0.90867 1.20870 0.97566 1.00972 0.98864 1.21129 0.92899 0.95707 0.97528 1.20715 1.02059 1.04223 0.92426 1.17913 0.89623 0.95329 0.87210 1.41512 1.19829 1.49237 1.11097 0.73992 1.23115 1.00092 0.84319 0.98569 1.21120 0.90827 0.97197 0.87175 0.93346 0.95541 0.91065 0.89472 0.91156 0.82435 0.84420 0.85282 0.85005 0.84699 0.90978 0.90760 0.95241 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 11.65 55.49 0.65 -23.70 16 2 C 0.01 0.31 4.83 -17.43 -0.08 0.22 16 3 Si 0.90 20.09 29.59 -169.99 -5.03 15.06 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.27 -6.70 9.51 -15.06 -0.14 -6.84 16 8 H 0.07 1.66 7.90 -52.49 -0.41 1.24 16 9 N -0.59 -13.30 2.93 -171.76 -0.50 -13.81 16 10 C 0.13 2.50 6.67 -3.59 -0.02 2.48 16 11 C 0.09 1.51 6.60 -3.60 -0.02 1.49 16 12 N -0.58 -9.20 2.94 -173.16 -0.51 -9.71 16 13 C 0.54 8.64 7.26 -12.12 -0.09 8.56 16 14 O -0.52 -9.62 16.34 5.38 0.09 -9.53 16 15 C 0.17 2.44 5.56 -82.59 -0.46 1.98 16 16 C -0.25 -3.83 9.49 -39.04 -0.37 -4.20 16 17 C 0.42 6.59 6.97 -34.47 -0.24 6.35 16 18 O -0.49 -8.86 17.34 4.98 0.09 -8.77 16 19 C -0.20 -2.63 5.89 -104.81 -0.62 -3.25 16 20 C -0.03 -0.30 9.61 -39.66 -0.38 -0.68 16 21 C -0.16 -1.38 9.97 -39.92 -0.40 -1.78 16 22 C -0.05 -0.41 10.01 -39.53 -0.40 -0.80 16 23 C -0.17 -1.47 9.91 -39.38 -0.39 -1.86 16 24 C 0.20 2.26 6.66 -84.00 -0.56 1.70 16 25 N -0.60 -6.72 3.86 -7.43 -0.03 -6.75 16 26 H 0.42 3.83 7.22 -40.82 -0.29 3.53 16 27 C 0.06 0.98 5.37 -3.36 -0.02 0.96 16 28 C 0.16 3.43 5.51 -3.37 -0.02 3.41 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 32 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.16 2.45 8.04 -52.49 -0.42 2.03 16 35 H 0.14 1.46 7.78 -52.49 -0.41 1.05 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.01 5.20 -51.93 -0.27 0.74 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.13 6.41 -51.93 -0.33 1.80 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -31.51 348.36 -9.23 -40.73 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.01 Total: 3.49 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -4.21 Total: 7.74 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.40 Total: -53.97 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.17 Total: -18.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.51 -9.23 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362613709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.973 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds