Wall clock time and date at job start Fri Apr 10 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00335 * 3 2 1 6 6 H 1.48499 * 109.47138 * 60.00127 * 3 2 1 7 7 C 1.38815 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99999 * 198.47623 * 7 2 1 9 9 N 1.36933 * 119.99956 * 18.47985 * 7 2 1 10 10 C 1.46970 * 120.58964 * 213.05667 * 9 7 2 11 11 C 1.53374 * 108.63441 * 235.24389 * 10 9 7 12 12 N 1.46959 * 108.63679 * 310.58095 * 11 10 9 13 13 C 1.34784 * 120.59332 * 235.20117 * 12 11 10 14 14 O 1.21485 * 119.99576 * 5.84613 * 13 12 11 15 15 C 1.48290 * 119.99961 * 185.84405 * 13 12 11 16 16 C 1.35675 * 118.86982 * 225.24392 * 15 13 12 17 17 C 1.42057 * 119.93469 * 180.02562 * 16 15 13 18 18 O 1.21928 * 121.07070 * 180.02562 * 17 16 15 19 19 C 1.47224 * 117.85974 * 0.02562 * 17 16 15 20 20 C 1.39578 * 121.35702 * 180.02562 * 19 17 16 21 21 C 1.36643 * 119.69637 * 179.97438 * 20 19 17 22 22 C 1.38887 * 120.55694 * 359.97438 * 21 20 19 23 23 C 1.37718 * 120.71645 * 0.06074 * 22 21 20 24 24 C 1.39294 * 119.72054 * 359.89499 * 23 22 21 25 25 N 1.36468 * 118.86631 * 45.27125 * 15 13 12 26 26 H 0.96996 * 119.18752 * 359.97438 * 25 15 13 27 27 C 1.46969 * 118.81719 * 55.47428 * 12 11 10 28 28 C 1.46961 * 120.60062 * 33.07831 * 9 7 2 29 29 H 0.96995 * 120.00175 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.60739 * 115.50346 * 10 9 7 31 31 H 1.09000 * 109.75072 * 355.07242 * 10 9 7 32 32 H 1.08992 * 109.61010 * 190.82982 * 11 10 9 33 33 H 1.09005 * 109.60842 * 70.31989 * 11 10 9 34 34 H 1.07998 * 120.03338 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.15592 * 359.93602 * 20 19 17 36 36 H 1.08000 * 119.72680 * 179.72517 * 21 20 19 37 37 H 1.07998 * 119.64519 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.13728 * 180.02562 * 23 22 21 39 39 H 1.08999 * 109.60422 * 64.26386 * 27 12 11 40 40 H 1.08995 * 109.61079 * 184.78043 * 27 12 11 41 41 H 1.09004 * 109.61181 * 244.50211 * 28 9 7 42 42 H 1.09005 * 109.60559 * 5.00768 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0485 -1.2264 0.2959 9 7 1.3785 -2.3573 -0.3769 10 6 1.7387 -3.6418 0.2398 11 6 2.1190 -4.6291 -0.8707 12 7 1.0691 -4.6066 -1.8989 13 6 0.4480 -5.7437 -2.2699 14 8 0.6775 -6.7812 -1.6810 15 6 -0.5156 -5.7284 -3.3971 16 6 -1.7001 -6.3746 -3.2551 17 6 -2.6396 -6.3749 -4.3207 18 8 -3.7103 -6.9485 -4.2154 19 6 -2.2787 -5.6603 -5.5563 20 6 -3.1469 -5.6134 -6.6481 21 6 -2.7776 -4.9398 -7.7782 22 6 -1.5462 -4.3014 -7.8490 23 6 -0.6739 -4.3355 -6.7839 24 6 -1.0297 -5.0153 -5.6214 25 7 -0.1801 -5.0652 -4.5416 26 1 0.6791 -4.6182 -4.5948 27 6 0.7128 -3.3229 -2.5196 28 6 0.3287 -2.3350 -1.4051 29 1 -0.4850 0.8400 0.0004 30 1 0.8876 -4.0305 0.7990 31 1 2.5856 -3.5032 0.9118 32 1 2.2023 -5.6331 -0.4548 33 1 3.0704 -4.3334 -1.3130 34 1 -1.9285 -6.8883 -2.3330 35 1 -4.1060 -6.1077 -6.6003 36 1 -3.4472 -4.9069 -8.6250 37 1 -1.2695 -3.7729 -8.7493 38 1 0.2811 -3.8354 -6.8490 39 1 1.5665 -2.9365 -3.0764 40 1 -0.1326 -3.4643 -3.1928 41 1 -0.6228 -2.6305 -0.9629 42 1 0.2453 -1.3308 -1.8210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362613709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:19 Heat of formation + Delta-G solvation = -3.989321 kcal Electronic energy + Delta-G solvation = -27713.865506 eV Core-core repulsion = 23852.317791 eV Total energy + Delta-G solvation = -3861.547715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -42.59690 -41.05587 -39.23156 -38.69234 -38.11445 -35.74459 -33.40634 -33.26367 -32.17089 -31.73825 -30.90133 -28.95590 -26.58638 -25.22106 -24.84987 -24.43268 -23.33346 -22.51961 -20.90754 -19.64783 -19.45768 -19.29588 -18.16515 -17.68958 -17.27200 -16.86597 -16.64682 -16.44161 -15.95703 -15.68853 -15.55670 -15.31640 -15.22364 -15.11779 -15.01423 -14.74182 -14.52311 -14.35341 -14.08581 -13.42431 -13.34108 -12.99532 -12.88298 -12.71240 -12.58288 -12.27432 -12.24590 -12.11284 -12.02729 -11.74953 -11.45911 -10.76478 -10.64257 -10.57740 -10.08873 -10.03441 -8.90752 -8.67426 -7.92617 -5.44766 -0.65586 -0.16860 0.52874 1.14850 1.39953 1.47889 1.52095 1.61531 1.82026 2.06479 2.49872 2.85907 2.89564 3.23237 3.24596 3.50812 3.58592 3.81441 3.93473 4.03517 4.13771 4.26518 4.28188 4.34841 4.37962 4.42009 4.51025 4.61917 4.71196 4.71859 4.76534 4.90250 4.99718 5.02580 5.14273 5.32024 5.39251 5.44831 5.49586 5.53060 5.65245 5.80405 5.97073 6.07791 6.34701 6.63260 6.65390 7.07790 7.73676 8.30236 9.13020 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003615 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.139709 B = 7743.619367 C = 8815.030317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.038 4.038 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.299 1.299 7 C -0.269 4.269 8 H 0.072 0.928 9 N -0.604 5.604 10 C 0.128 3.872 11 C 0.106 3.894 12 N -0.584 5.584 13 C 0.550 3.450 14 O -0.546 6.546 15 C 0.193 3.807 16 C -0.279 4.279 17 C 0.411 3.589 18 O -0.537 6.537 19 C -0.225 4.225 20 C -0.049 4.049 21 C -0.150 4.150 22 C -0.043 4.043 23 C -0.163 4.163 24 C 0.189 3.811 25 N -0.584 5.584 26 H 0.435 0.565 27 C 0.082 3.918 28 C 0.168 3.832 29 H 0.252 0.748 30 H 0.004 0.996 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.102 0.898 40 H 0.094 0.906 41 H -0.007 1.007 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.049 -18.633 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.399 4.399 8 H 0.089 0.911 9 N -0.327 5.327 10 C 0.001 3.999 11 C -0.017 4.017 12 N -0.315 5.315 13 C 0.336 3.664 14 O -0.424 6.424 15 C 0.080 3.920 16 C -0.307 4.307 17 C 0.302 3.698 18 O -0.423 6.423 19 C -0.229 4.229 20 C -0.068 4.068 21 C -0.168 4.168 22 C -0.062 4.062 23 C -0.183 4.183 24 C 0.086 3.914 25 N -0.199 5.199 26 H 0.276 0.724 27 C -0.041 4.041 28 C 0.041 3.959 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.012 0.988 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.196 -6.748 -18.215 19.549 hybrid contribution 0.062 0.963 1.003 1.392 sum 2.258 -5.785 -17.212 18.298 Atomic orbital electron populations 1.70197 1.06965 1.26233 1.54248 1.25906 0.95769 1.01759 1.00051 0.85252 0.78930 0.79751 0.76707 1.18692 1.21274 1.22601 1.19498 0.93369 0.85558 1.41503 0.91066 1.44199 1.43423 1.03086 1.42042 1.21416 0.98315 0.86253 0.93869 1.22253 0.89613 1.00875 0.88995 1.48167 1.37096 1.06858 1.39411 1.18344 0.80372 0.84110 0.83613 1.90803 1.63813 1.32299 1.55452 1.19736 0.94179 0.91637 0.86485 1.22187 0.95324 1.09530 1.03660 1.18798 0.85857 0.78242 0.86884 1.90657 1.25424 1.42594 1.83607 1.20324 0.96799 1.07449 0.98340 1.20962 0.98268 0.95880 0.91644 1.21269 0.98392 0.98861 0.98307 1.21664 0.91744 0.94318 0.98474 1.21174 1.03474 1.02694 0.90971 1.18128 0.88974 0.96240 0.88069 1.41463 1.20331 1.47966 1.10174 0.72367 1.22903 1.02031 0.82602 0.96608 1.20938 0.89226 0.97495 0.88252 0.93906 0.97793 0.90278 0.88854 0.88809 0.84060 0.85272 0.82389 0.80923 0.81268 0.87996 0.88812 0.98839 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.77 11.65 21.65 0.25 -51.52 16 2 C -0.04 -1.95 4.83 84.86 0.41 -1.54 16 3 Si 0.97 41.08 29.59 68.60 2.03 43.11 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.27 -13.37 9.51 84.03 0.80 -12.57 16 8 H 0.07 3.42 7.90 -2.91 -0.02 3.40 16 9 N -0.60 -27.21 2.93 -697.32 -2.05 -29.26 16 10 C 0.13 4.87 6.67 86.42 0.58 5.45 16 11 C 0.11 3.20 6.60 86.42 0.57 3.77 16 12 N -0.58 -17.44 2.94 -820.06 -2.41 -19.86 16 13 C 0.55 17.07 7.26 86.92 0.63 17.70 16 14 O -0.55 -20.12 16.34 -3.67 -0.06 -20.18 16 15 C 0.19 5.32 5.56 40.51 0.23 5.55 16 16 C -0.28 -9.01 9.49 22.62 0.21 -8.79 16 17 C 0.41 13.69 6.97 25.58 0.18 13.87 16 18 O -0.54 -21.15 17.34 -5.08 -0.09 -21.23 16 19 C -0.23 -5.82 5.89 -19.99 -0.12 -5.94 16 20 C -0.05 -1.04 9.61 22.22 0.21 -0.83 16 21 C -0.15 -1.98 9.97 22.05 0.22 -1.77 16 22 C -0.04 -0.43 10.01 22.30 0.22 -0.20 16 23 C -0.16 -1.98 9.91 22.40 0.22 -1.75 16 24 C 0.19 3.74 6.66 39.12 0.26 4.00 16 25 N -0.58 -11.69 3.86 -177.43 -0.68 -12.38 16 26 H 0.44 6.19 7.22 -92.71 -0.67 5.52 16 27 C 0.08 2.36 5.37 86.56 0.46 2.83 16 28 C 0.17 7.05 5.51 86.57 0.48 7.53 16 29 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 2.85 7.94 -2.39 -0.02 2.83 16 32 H 0.09 2.77 6.99 -2.39 -0.02 2.75 16 33 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.14 4.86 8.04 -2.91 -0.02 4.84 16 35 H 0.13 2.86 7.78 -2.91 -0.02 2.84 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 38 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.09 2.34 5.20 -2.39 -0.01 2.33 16 41 H -0.01 -0.32 8.14 -2.38 -0.02 -0.33 16 42 H 0.07 3.25 6.41 -2.38 -0.02 3.23 16 Total: -1.00 -72.79 348.36 2.96 -69.83 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.40 Total: 14.17 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 5.57 Total: 27.31 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.89 Total: -113.01 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.15 Total: -41.41 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -72.79 2.96 -69.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362613709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.845 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds