Wall clock time and date at job start Fri Apr 10 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47038 * 164.16808 * 3 2 1 5 5 O 1.21277 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99939 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47243 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.76276 * 60.55254 * 8 7 6 10 10 C 1.52778 * 109.81722 * 181.32428 * 8 7 6 11 11 C 1.50598 * 110.86605 * 167.09208 * 10 8 7 12 12 C 1.38970 * 117.62292 * 160.47909 * 11 10 8 13 13 C 1.37909 * 120.58098 * 178.87051 * 12 11 10 14 14 C 1.38263 * 119.82563 * 359.97438 * 13 12 11 15 15 C 1.37960 * 119.71875 * 0.21969 * 14 13 12 16 16 C 1.37672 * 122.85122 * 339.76123 * 11 10 8 17 17 C 1.50809 * 122.34836 * 1.62491 * 16 11 10 18 18 N 1.46686 * 109.67164 * 348.29976 * 17 16 11 19 19 C 1.34776 * 121.33866 * 224.48269 * 18 17 16 20 20 O 1.21683 * 120.00090 * 174.45555 * 19 18 17 21 21 C 1.46373 * 119.99604 * 354.45278 * 19 18 17 22 22 H 1.07993 * 120.00382 * 336.47050 * 21 19 18 23 23 C 1.40055 * 119.99723 * 156.47174 * 21 19 18 24 24 N 1.30675 * 119.99935 * 182.68682 * 23 21 19 25 25 Si 1.86800 * 119.99987 * 2.68241 * 23 21 19 26 26 H 1.48503 * 109.47043 * 84.02352 * 25 23 21 27 27 H 1.48498 * 109.47230 * 204.02628 * 25 23 21 28 28 H 1.48503 * 109.46976 * 324.02714 * 25 23 21 29 29 H 1.08998 * 109.47103 * 44.17280 * 3 2 1 30 30 H 1.08998 * 109.47443 * 284.17178 * 3 2 1 31 31 H 0.97002 * 119.99718 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.47222 * 60.00681 * 7 6 4 33 33 H 1.08998 * 109.47355 * 300.00414 * 7 6 4 34 34 H 1.09001 * 109.20462 * 46.72774 * 10 8 7 35 35 H 1.09006 * 109.19479 * 287.44374 * 10 8 7 36 36 H 1.07998 * 119.70959 * 358.85224 * 12 11 10 37 37 H 1.07997 * 120.08894 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.14083 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.74243 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.43813 * 108.36697 * 17 16 11 41 41 H 1.09006 * 109.43653 * 228.28477 * 17 16 11 42 42 H 0.97003 * 119.99895 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.3678 -0.3876 5 8 2.3212 2.2544 -0.6386 6 7 4.4347 1.6052 -0.4553 7 6 4.9224 2.9344 -0.8316 8 6 6.4524 2.9348 -0.8330 9 1 6.8205 2.2065 -1.5556 10 6 6.9697 4.3266 -1.1925 11 6 8.4422 4.4439 -0.8993 12 6 9.1463 5.4608 -1.5329 13 6 10.4924 5.6383 -1.2909 14 6 11.1493 4.7989 -0.4103 15 6 10.4537 3.7861 0.2171 16 6 9.0999 3.6030 -0.0300 17 6 8.4032 2.4672 0.6763 18 7 6.9517 2.5990 0.5108 19 6 6.1089 2.4204 1.5473 20 8 4.9191 2.6339 1.4078 21 6 6.6249 1.9696 2.8407 22 1 7.5572 1.4269 2.8908 23 6 5.9094 2.2420 4.0135 24 7 6.3955 1.8859 5.1731 25 14 4.2603 3.1146 3.9202 26 1 3.1905 2.1227 3.6427 27 1 3.9846 3.7915 5.2128 28 1 4.2949 4.1231 2.8307 29 1 2.9717 -0.7362 -0.7161 30 1 2.9715 -0.2508 0.9963 31 1 5.0653 0.8960 -0.2549 32 1 4.5593 3.6710 -0.1149 33 1 4.5584 3.1865 -1.8276 34 1 6.4278 5.0720 -0.6103 35 1 6.7999 4.5090 -2.2537 36 1 8.6350 6.1176 -2.2210 37 1 11.0317 6.4314 -1.7873 38 1 12.2035 4.9331 -0.2173 39 1 10.9666 3.1299 0.9047 40 1 8.7323 1.5191 0.2510 41 1 8.6505 2.4939 1.7376 42 1 5.9001 2.0749 5.9854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871466599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:33 Heat of formation + Delta-G solvation = 3.691405 kcal Electronic energy + Delta-G solvation = -28126.106782 eV Core-core repulsion = 24264.892128 eV Total energy + Delta-G solvation = -3861.214654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32824 -39.25368 -38.16595 -36.17860 -35.42990 -34.18991 -32.88605 -32.69790 -31.17184 -30.70929 -29.54762 -26.77848 -25.60773 -25.08878 -22.34315 -21.92962 -20.80542 -20.40418 -18.94158 -17.66432 -17.06794 -16.64479 -16.36477 -16.01392 -15.63919 -15.36737 -15.09629 -14.77076 -14.58325 -14.38597 -14.08197 -13.66217 -13.33338 -13.31741 -12.94009 -12.73847 -12.58189 -12.41526 -12.31974 -12.26086 -12.11417 -11.90939 -11.74983 -11.52128 -11.40440 -11.27536 -10.94980 -10.87075 -10.63274 -10.45265 -9.59615 -9.52550 -9.14084 -8.69580 -8.45721 -8.39891 -7.69852 -7.58992 -6.71978 -4.94856 1.47502 1.48757 2.74267 2.90821 3.14404 3.35971 3.41901 3.67682 3.72021 3.85708 3.91392 4.04791 4.17180 4.40656 4.76906 4.87662 5.04353 5.08757 5.09931 5.24087 5.24895 5.31329 5.34844 5.45402 5.45859 5.54926 5.67849 5.73860 5.92599 5.95465 6.08086 6.10989 6.16380 6.28983 6.55954 6.58972 6.63302 6.75496 6.89229 6.97331 7.12247 7.40898 7.68457 7.71825 7.97944 8.18853 8.56915 8.67917 8.95511 9.84326 10.28707 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004740 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.482992 B = 5905.849304 C = 7508.874426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.230 3.770 3 C -0.049 4.049 4 C 0.527 3.473 5 O -0.550 6.550 6 N -0.680 5.680 7 C 0.138 3.862 8 C 0.140 3.860 9 H 0.067 0.933 10 C -0.089 4.089 11 C -0.066 4.066 12 C -0.123 4.123 13 C -0.128 4.128 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.082 4.082 17 C 0.161 3.839 18 N -0.630 5.630 19 C 0.552 3.448 20 O -0.587 6.587 21 C -0.532 4.532 22 H 0.088 0.912 23 C 0.104 3.896 24 N -0.830 5.830 25 Si 0.954 3.046 26 H -0.279 1.279 27 H -0.323 1.323 28 H -0.254 1.254 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.398 0.602 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -0.086 -11.989 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.088 4.088 3 C -0.092 4.092 4 C 0.310 3.690 5 O -0.428 6.428 6 N -0.329 5.329 7 C 0.015 3.985 8 C 0.035 3.965 9 H 0.085 0.915 10 C -0.128 4.128 11 C -0.066 4.066 12 C -0.141 4.141 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.133 4.133 16 C -0.083 4.083 17 C 0.037 3.963 18 N -0.365 5.365 19 C 0.361 3.639 20 O -0.477 6.477 21 C -0.568 4.568 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.459 5.459 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.255 1.255 28 H -0.179 1.179 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.746 0.611 -12.032 13.808 hybrid contribution 0.557 0.108 0.358 0.671 sum 7.304 0.719 -11.674 13.789 Atomic orbital electron populations 1.81122 1.12728 1.08232 1.08732 1.28167 0.94401 0.93042 0.93238 1.19205 0.83638 0.98898 1.07410 1.19556 0.82959 0.88522 0.77930 1.90710 1.55326 1.46314 1.50454 1.45463 1.05918 1.13445 1.68086 1.21424 0.90932 0.87085 0.99070 1.21152 0.93806 0.95171 0.86338 0.91464 1.20772 0.92086 0.98363 1.01540 1.19463 0.95272 0.95424 0.96476 1.21131 0.94491 0.98011 1.00470 1.20977 0.94720 0.99715 0.99192 1.21011 0.99652 0.96032 0.97674 1.21075 0.93737 0.98532 1.00001 1.20147 0.94006 0.97536 0.96638 1.20329 0.80521 0.93721 1.01725 1.47874 1.05588 1.75148 1.07932 1.18328 0.84615 0.77170 0.83742 1.90412 1.16554 1.59652 1.81039 1.20698 1.09940 1.37607 0.88520 0.89401 1.25687 0.99153 0.92472 0.94123 1.69527 1.38585 1.38920 0.98912 0.85470 0.80508 0.81011 0.74351 1.20516 1.25481 1.17916 0.85000 0.84275 0.76779 0.87997 0.93193 0.89900 0.90394 0.86499 0.86552 0.86370 0.85898 0.91904 0.87239 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.94 18.54 42.15 0.78 -7.16 16 2 C 0.23 3.66 14.67 -20.76 -0.30 3.35 16 3 C -0.05 -0.60 6.19 -30.67 -0.19 -0.79 16 4 C 0.53 8.82 7.35 -10.98 -0.08 8.74 16 5 O -0.55 -11.69 16.03 5.56 0.09 -11.60 16 6 N -0.68 -10.55 3.28 -60.30 -0.20 -10.74 16 7 C 0.14 2.22 4.26 -4.04 -0.02 2.20 16 8 C 0.14 2.00 2.94 -67.64 -0.20 1.80 16 9 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.09 -1.18 5.21 -28.05 -0.15 -1.32 16 11 C -0.07 -0.90 5.76 -104.61 -0.60 -1.50 16 12 C -0.12 -1.47 9.59 -39.43 -0.38 -1.85 16 13 C -0.13 -1.42 10.04 -39.69 -0.40 -1.82 16 14 C -0.13 -1.42 10.05 -39.67 -0.40 -1.81 16 15 C -0.11 -1.44 9.62 -39.46 -0.38 -1.82 16 16 C -0.08 -1.16 5.82 -104.56 -0.61 -1.77 16 17 C 0.16 2.45 5.93 -5.04 -0.03 2.42 16 18 N -0.63 -10.77 2.87 -168.49 -0.48 -11.25 16 19 C 0.55 11.80 6.35 -12.99 -0.08 11.71 16 20 O -0.59 -13.39 6.45 5.20 0.03 -13.36 16 21 C -0.53 -12.84 8.90 -35.63 -0.32 -13.15 16 22 H 0.09 2.15 6.91 -52.49 -0.36 1.78 16 23 C 0.10 2.67 5.52 -17.36 -0.10 2.57 16 24 N -0.83 -21.89 13.92 55.55 0.77 -21.12 16 25 Si 0.95 23.68 26.13 -169.99 -4.44 19.24 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.32 -7.99 7.11 56.52 0.40 -7.59 16 28 H -0.25 -6.67 6.30 56.52 0.36 -6.32 16 29 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.14 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.40 5.44 7.79 -40.82 -0.32 5.13 16 32 H 0.10 2.07 6.33 -51.93 -0.33 1.75 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.12 1.17 8.05 -52.49 -0.42 0.75 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.34 8.05 -52.48 -0.42 0.92 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 1.88 6.13 -51.93 -0.32 1.56 16 42 H 0.28 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -33.02 350.50 -7.54 -40.56 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.15 Total: 3.19 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -4.23 Total: 6.96 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.87 Total: -50.27 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.12 Total: -24.96 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.44 Total: 19.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.02 -7.54 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871466599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.255 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds