Wall clock time and date at job start Fri Apr 10 2020 14:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47038 * 164.16808 * 3 2 1 5 5 O 1.21277 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99939 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47243 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.76276 * 60.55254 * 8 7 6 10 10 C 1.52778 * 109.81722 * 181.32428 * 8 7 6 11 11 C 1.50598 * 110.86605 * 167.09208 * 10 8 7 12 12 C 1.38970 * 117.62292 * 160.47909 * 11 10 8 13 13 C 1.37909 * 120.58098 * 178.87051 * 12 11 10 14 14 C 1.38263 * 119.82563 * 359.97438 * 13 12 11 15 15 C 1.37960 * 119.71875 * 0.21969 * 14 13 12 16 16 C 1.37672 * 122.85122 * 339.76123 * 11 10 8 17 17 C 1.50809 * 122.34836 * 1.62491 * 16 11 10 18 18 N 1.46686 * 109.67164 * 348.29976 * 17 16 11 19 19 C 1.34776 * 121.33866 * 224.48269 * 18 17 16 20 20 O 1.21683 * 120.00090 * 174.45555 * 19 18 17 21 21 C 1.46373 * 119.99604 * 354.45278 * 19 18 17 22 22 H 1.07993 * 120.00382 * 336.47050 * 21 19 18 23 23 C 1.40055 * 119.99723 * 156.47174 * 21 19 18 24 24 N 1.30675 * 119.99935 * 182.68682 * 23 21 19 25 25 Si 1.86800 * 119.99987 * 2.68241 * 23 21 19 26 26 H 1.48503 * 109.47043 * 84.02352 * 25 23 21 27 27 H 1.48498 * 109.47230 * 204.02628 * 25 23 21 28 28 H 1.48503 * 109.46976 * 324.02714 * 25 23 21 29 29 H 1.08998 * 109.47103 * 44.17280 * 3 2 1 30 30 H 1.08998 * 109.47443 * 284.17178 * 3 2 1 31 31 H 0.97002 * 119.99718 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.47222 * 60.00681 * 7 6 4 33 33 H 1.08998 * 109.47355 * 300.00414 * 7 6 4 34 34 H 1.09001 * 109.20462 * 46.72774 * 10 8 7 35 35 H 1.09006 * 109.19479 * 287.44374 * 10 8 7 36 36 H 1.07998 * 119.70959 * 358.85224 * 12 11 10 37 37 H 1.07997 * 120.08894 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.14083 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.74243 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.43813 * 108.36697 * 17 16 11 41 41 H 1.09006 * 109.43653 * 228.28477 * 17 16 11 42 42 H 0.97003 * 119.99895 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.3678 -0.3876 5 8 2.3212 2.2544 -0.6386 6 7 4.4347 1.6052 -0.4553 7 6 4.9224 2.9344 -0.8316 8 6 6.4524 2.9348 -0.8330 9 1 6.8205 2.2065 -1.5556 10 6 6.9697 4.3266 -1.1925 11 6 8.4422 4.4439 -0.8993 12 6 9.1463 5.4608 -1.5329 13 6 10.4924 5.6383 -1.2909 14 6 11.1493 4.7989 -0.4103 15 6 10.4537 3.7861 0.2171 16 6 9.0999 3.6030 -0.0300 17 6 8.4032 2.4672 0.6763 18 7 6.9517 2.5990 0.5108 19 6 6.1089 2.4204 1.5473 20 8 4.9191 2.6339 1.4078 21 6 6.6249 1.9696 2.8407 22 1 7.5572 1.4269 2.8908 23 6 5.9094 2.2420 4.0135 24 7 6.3955 1.8859 5.1731 25 14 4.2603 3.1146 3.9202 26 1 3.1905 2.1227 3.6427 27 1 3.9846 3.7915 5.2128 28 1 4.2949 4.1231 2.8307 29 1 2.9717 -0.7362 -0.7161 30 1 2.9715 -0.2508 0.9963 31 1 5.0653 0.8960 -0.2549 32 1 4.5593 3.6710 -0.1149 33 1 4.5584 3.1865 -1.8276 34 1 6.4278 5.0720 -0.6103 35 1 6.7999 4.5090 -2.2537 36 1 8.6350 6.1176 -2.2210 37 1 11.0317 6.4314 -1.7873 38 1 12.2035 4.9331 -0.2173 39 1 10.9666 3.1299 0.9047 40 1 8.7323 1.5191 0.2510 41 1 8.6505 2.4939 1.7376 42 1 5.9001 2.0749 5.9854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871466599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:32 Heat of formation + Delta-G solvation = -17.643263 kcal Electronic energy + Delta-G solvation = -28127.031923 eV Core-core repulsion = 24264.892128 eV Total energy + Delta-G solvation = -3862.139795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60153 -40.46432 -39.53239 -37.50652 -36.84643 -35.55941 -34.76684 -33.86307 -32.30070 -31.84241 -30.64897 -28.50691 -26.84640 -26.27131 -23.62155 -22.90516 -22.07158 -21.72873 -20.37231 -19.00629 -18.49375 -18.10013 -17.56839 -17.39182 -16.87126 -16.68029 -16.33173 -16.19551 -15.76452 -15.57421 -15.33415 -14.95865 -14.74634 -14.64055 -14.32822 -14.00196 -13.92098 -13.80098 -13.78097 -13.61731 -13.44971 -13.25156 -13.02615 -12.84341 -12.76668 -12.55393 -12.45096 -12.24468 -11.90155 -11.64497 -11.48118 -11.14398 -10.89945 -9.87120 -9.57822 -9.44714 -9.33675 -9.05003 -8.70510 -6.87191 0.54038 0.56214 1.34234 1.40825 1.50013 1.66316 1.70430 1.83964 2.17998 2.29416 2.51711 2.62459 2.92783 3.02159 3.38395 3.66188 3.90304 3.93921 4.10733 4.17008 4.26147 4.30955 4.37714 4.44081 4.50436 4.59105 4.63986 4.72487 4.83434 4.86487 4.92433 4.99850 5.10919 5.22472 5.25188 5.35820 5.64749 5.67622 5.70966 5.73709 5.85066 6.02390 6.21305 6.36640 6.46612 6.73359 6.74163 7.20928 7.42385 8.11381 8.35400 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004740 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.482992 B = 5905.849304 C = 7508.874426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.518 3.482 5 O -0.603 6.603 6 N -0.673 5.673 7 C 0.142 3.858 8 C 0.145 3.855 9 H 0.102 0.898 10 C -0.085 4.085 11 C -0.083 4.083 12 C -0.128 4.128 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.125 4.125 16 C -0.103 4.103 17 C 0.163 3.837 18 N -0.625 5.625 19 C 0.562 3.438 20 O -0.600 6.600 21 C -0.538 4.538 22 H 0.082 0.918 23 C 0.080 3.920 24 N -0.859 5.859 25 Si 0.993 3.007 26 H -0.289 1.289 27 H -0.325 1.325 28 H -0.281 1.281 29 H 0.193 0.807 30 H 0.157 0.843 31 H 0.409 0.591 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.927 -0.410 -14.272 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.072 4.072 3 C -0.081 4.081 4 C 0.304 3.696 5 O -0.486 6.486 6 N -0.321 5.321 7 C 0.018 3.982 8 C 0.041 3.959 9 H 0.120 0.880 10 C -0.123 4.123 11 C -0.084 4.084 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.104 4.104 17 C 0.040 3.960 18 N -0.359 5.359 19 C 0.367 3.633 20 O -0.490 6.490 21 C -0.575 4.575 22 H 0.100 0.900 23 C -0.135 4.135 24 N -0.491 5.491 25 Si 0.828 3.172 26 H -0.215 1.215 27 H -0.256 1.256 28 H -0.208 1.208 29 H 0.210 0.790 30 H 0.175 0.825 31 H 0.245 0.755 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.134 0.269 -14.325 16.992 hybrid contribution -0.040 0.296 0.930 0.977 sum 9.094 0.565 -13.395 16.201 Atomic orbital electron populations 1.81127 1.14514 1.09879 1.10665 1.28836 0.95179 0.91506 0.91642 1.19463 0.81150 0.97504 1.09966 1.20275 0.82810 0.89650 0.76915 1.90693 1.56549 1.48425 1.52887 1.45432 1.05977 1.13476 1.67223 1.21283 0.92118 0.86240 0.98579 1.21348 0.92479 0.96956 0.85072 0.88045 1.20748 0.91858 0.96700 1.03045 1.19570 0.95317 0.96274 0.97200 1.21390 0.95058 0.97654 1.00472 1.21364 0.94558 0.99956 0.98635 1.21360 1.00918 0.95206 0.96957 1.21271 0.93330 0.99319 1.00410 1.20104 0.94820 0.97851 0.97610 1.20352 0.79164 0.95731 1.00764 1.47696 1.06198 1.73744 1.08272 1.18011 0.84625 0.76566 0.84068 1.90432 1.17405 1.59638 1.81535 1.20896 1.09523 1.37519 0.89535 0.89969 1.25956 0.99838 0.93066 0.94593 1.69551 1.39348 1.40966 0.99250 0.84904 0.79691 0.79518 0.73085 1.21546 1.25617 1.20760 0.79017 0.82545 0.75506 0.92709 0.91410 0.92246 0.87316 0.84593 0.83853 0.83889 0.84947 0.89604 0.89742 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -17.87 18.54 20.01 0.37 -17.50 16 2 C 0.25 7.57 14.67 89.44 1.31 8.88 16 3 C -0.04 -0.86 6.19 28.05 0.17 -0.68 16 4 C 0.52 16.72 7.35 87.66 0.64 17.37 16 5 O -0.60 -25.83 16.03 -3.02 -0.05 -25.88 16 6 N -0.67 -19.73 3.28 -463.07 -1.52 -21.25 16 7 C 0.14 4.40 4.26 86.38 0.37 4.77 16 8 C 0.14 3.82 2.94 44.78 0.13 3.95 16 9 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 10 C -0.09 -2.07 5.21 29.74 0.15 -1.92 16 11 C -0.08 -2.08 5.76 -19.85 -0.11 -2.19 16 12 C -0.13 -2.66 9.59 22.37 0.21 -2.44 16 13 C -0.13 -2.36 10.04 22.20 0.22 -2.14 16 14 C -0.13 -2.44 10.05 22.21 0.22 -2.22 16 15 C -0.12 -2.85 9.62 22.35 0.22 -2.64 16 16 C -0.10 -2.72 5.82 -19.82 -0.12 -2.83 16 17 C 0.16 4.74 5.93 85.63 0.51 5.25 16 18 N -0.63 -20.60 2.87 -805.19 -2.31 -22.91 16 19 C 0.56 23.83 6.35 86.36 0.55 24.38 16 20 O -0.60 -27.48 6.45 -4.29 -0.03 -27.50 16 21 C -0.54 -26.08 8.90 24.83 0.22 -25.86 16 22 H 0.08 4.04 6.91 -2.91 -0.02 4.02 16 23 C 0.08 4.17 5.52 85.31 0.47 4.64 16 24 N -0.86 -45.88 13.92 21.84 0.30 -45.58 16 25 Si 0.99 49.99 26.13 68.60 1.79 51.78 16 26 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16 28 H -0.28 -15.20 6.30 99.48 0.63 -14.57 16 29 H 0.19 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.16 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.41 10.10 7.79 -92.71 -0.72 9.38 16 32 H 0.05 2.27 6.33 -2.39 -0.02 2.26 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.73 8.07 -2.39 -0.02 1.71 16 35 H 0.11 1.96 8.11 -2.38 -0.02 1.94 16 36 H 0.14 2.23 8.05 -2.91 -0.02 2.21 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.13 2.65 8.05 -2.91 -0.02 2.63 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 2.89 6.13 -2.38 -0.01 2.88 16 42 H 0.29 14.35 8.29 -92.71 -0.77 13.58 16 Total: -1.00 -75.32 350.50 4.01 -71.31 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.27 Total: 11.23 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 5.18 Total: 26.31 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.16 Total: -107.24 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.08 Total: -53.38 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.79 Total: 51.78 kcal Total: -75.32 4.01 -71.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871466599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.663 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds