Wall clock time and date at job start Fri Apr 10 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47199 * 270.00007 * 3 2 1 5 5 H 1.48498 * 109.47514 * 30.00212 * 3 2 1 6 6 H 1.48506 * 109.46845 * 150.00257 * 3 2 1 7 7 C 1.38807 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00394 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00306 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00346 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.77807 * 328.23703 * 10 9 7 12 12 C 1.55149 * 110.72279 * 204.99688 * 10 9 7 13 13 C 1.54905 * 101.61874 * 206.15471 * 12 10 9 14 14 N 1.47416 * 104.83360 * 36.99131 * 13 12 10 15 15 C 1.34776 * 125.65277 * 155.83845 * 14 13 12 16 16 O 1.21637 * 120.00378 * 175.94720 * 15 14 13 17 17 C 1.47143 * 119.99601 * 355.94290 * 15 14 13 18 18 C 1.37942 * 120.55097 * 35.95251 * 17 15 14 19 19 N 1.33956 * 122.19952 * 180.02562 * 18 17 15 20 20 H 0.96997 * 118.59661 * 180.02562 * 19 18 17 21 21 C 1.37797 * 122.80528 * 0.02562 * 19 18 17 22 22 C 1.39279 * 120.51600 * 180.02562 * 21 19 18 23 23 C 1.37729 * 119.97170 * 179.97438 * 22 21 19 24 24 C 1.38785 * 120.72552 * 0.04819 * 23 22 21 25 25 C 1.37721 * 120.29701 * 359.97414 * 24 23 22 26 26 C 1.39498 * 119.60270 * 359.97438 * 25 24 23 27 27 C 1.47147 * 120.55000 * 215.67850 * 17 15 14 28 28 O 1.21855 * 121.41406 * 359.97438 * 27 17 15 29 29 C 1.47018 * 108.70487 * 335.87046 * 14 13 12 30 30 H 0.97000 * 120.00119 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99539 * 359.97438 * 9 7 2 32 32 H 1.09000 * 111.00228 * 88.05841 * 12 10 9 33 33 H 1.09008 * 111.00512 * 324.24838 * 12 10 9 34 34 H 1.09005 * 110.36429 * 155.83219 * 13 12 10 35 35 H 1.09004 * 110.36560 * 278.14935 * 13 12 10 36 36 H 1.07997 * 118.90138 * 359.97438 * 18 17 15 37 37 H 1.07995 * 120.01470 * 359.95818 * 22 21 19 38 38 H 1.07999 * 119.63834 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.85968 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.19971 * 180.02562 * 25 24 23 41 41 H 1.09004 * 109.88450 * 120.47531 * 29 14 13 42 42 H 1.09004 * 109.88896 * 241.49185 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5548 -3.2391 0.5361 12 6 5.5253 -2.2889 0.6138 13 6 6.3132 -3.4324 -0.0727 14 7 5.7758 -3.4905 -1.4442 15 6 6.4220 -3.9798 -2.5210 16 8 5.8529 -4.0455 -3.5940 17 6 7.8162 -4.4343 -2.3986 18 6 8.2510 -5.0610 -1.2493 19 7 9.5123 -5.4874 -1.1023 20 1 9.7617 -5.9221 -0.2718 21 6 10.4707 -5.3350 -2.0806 22 6 11.7687 -5.7972 -1.8772 23 6 12.7177 -5.6394 -2.8629 24 6 12.3971 -5.0214 -4.0635 25 6 11.1201 -4.5562 -4.2861 26 6 10.1484 -4.7102 -3.2971 27 6 8.7681 -4.2332 -3.5026 28 8 8.4317 -3.6899 -4.5402 29 6 4.4185 -2.9258 -1.4431 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 5.5021 -2.4247 1.6950 33 1 5.9421 -1.3160 0.3532 34 1 7.3782 -3.2008 -0.0920 35 1 6.1387 -4.3764 0.4435 36 1 7.5514 -5.2122 -0.4406 37 1 12.0311 -6.2789 -0.9469 38 1 13.7224 -6.0002 -2.6996 39 1 13.1523 -4.9046 -4.8266 40 1 10.8722 -4.0759 -5.2211 41 1 4.3719 -2.0712 -2.1182 42 1 3.7009 -3.6844 -1.7557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969179973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:08 Heat of formation + Delta-G solvation = 5.798028 kcal Electronic energy + Delta-G solvation = -26890.679913 eV Core-core repulsion = 23029.556609 eV Total energy + Delta-G solvation = -3861.123304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.44111 -39.67608 -38.21288 -37.66717 -36.99456 -34.29460 -32.52601 -31.69593 -31.11285 -30.35560 -29.81731 -27.84060 -25.00870 -24.45932 -23.51337 -22.77000 -22.31450 -20.71646 -19.82904 -18.85323 -18.49416 -18.04181 -17.53266 -16.41193 -16.20772 -16.05805 -15.36698 -15.23998 -14.98708 -14.75580 -14.46867 -14.32694 -13.92633 -13.71328 -13.52028 -13.46515 -13.11541 -12.70241 -12.53199 -12.45758 -12.39441 -12.14780 -11.83880 -11.75492 -11.30078 -10.90446 -10.79585 -10.55007 -10.12135 -9.98981 -9.70487 -9.63570 -9.51035 -9.44486 -9.01691 -8.38553 -8.10310 -7.38735 -5.82033 -3.20143 0.34577 0.41640 1.27755 2.30648 2.51445 3.00178 3.25899 3.35037 3.39500 3.44559 3.68073 3.86366 4.09833 4.26571 4.34309 4.54944 4.56042 4.66940 4.75649 4.80350 4.92376 5.00610 5.12616 5.21031 5.33876 5.36111 5.46503 5.49611 5.53739 5.64654 5.79765 5.82123 5.88772 6.04832 6.11580 6.16482 6.23329 6.44627 6.46772 6.52140 6.67195 6.76471 7.70980 7.77766 7.91968 8.36448 8.48824 9.12792 9.84994 10.02462 11.35601 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.002595 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.177858 B =10787.450957 C =11033.401891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.077 0.923 12 C -0.145 4.145 13 C 0.095 3.905 14 N -0.616 5.616 15 C 0.589 3.411 16 O -0.520 6.520 17 C -0.314 4.314 18 C 0.196 3.804 19 N -0.599 5.599 20 H 0.421 0.579 21 C 0.183 3.817 22 C -0.170 4.170 23 C -0.061 4.061 24 C -0.155 4.155 25 C -0.031 4.031 26 C -0.183 4.183 27 C 0.433 3.567 28 O -0.455 6.455 29 C 0.084 3.916 30 H 0.261 0.739 31 H 0.364 0.636 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.175 0.825 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.958 -15.068 2.646 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.067 3.933 11 H 0.095 0.905 12 C -0.184 4.184 13 C -0.029 4.029 14 N -0.351 5.351 15 C 0.377 3.623 16 O -0.396 6.396 17 C -0.326 4.326 18 C 0.064 3.936 19 N -0.207 5.207 20 H 0.258 0.742 21 C 0.081 3.919 22 C -0.190 4.190 23 C -0.079 4.079 24 C -0.174 4.174 25 C -0.049 4.049 26 C -0.187 4.187 27 C 0.314 3.686 28 O -0.333 6.333 29 C -0.041 4.041 30 H 0.071 0.929 31 H 0.198 0.802 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.192 0.808 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.090 0.910 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 29.191 -14.847 1.379 32.779 hybrid contribution 0.675 0.975 0.503 1.288 sum 29.866 -13.872 1.883 32.984 Atomic orbital electron populations 1.69696 1.05133 1.26013 1.56702 1.24682 0.95242 0.97303 1.01483 0.86567 0.79151 0.84921 0.77967 1.20899 1.21631 1.20279 1.19082 0.80270 0.94919 1.44030 0.88926 1.42714 1.04212 1.01558 1.89276 1.21178 0.90503 0.90141 0.91520 0.90477 1.23130 0.96928 0.98023 1.00295 1.22485 0.98332 0.99041 0.83030 1.48466 1.17617 1.61599 1.07434 1.17037 0.84239 0.77935 0.83084 1.90835 1.67215 1.54903 1.26625 1.21913 0.97100 1.16266 0.97286 1.22320 0.84936 0.88989 0.97377 1.40822 1.07773 1.54228 1.17840 0.74208 1.17910 0.89112 0.96398 0.88444 1.20702 0.91018 1.05804 1.01519 1.21117 0.99025 0.95318 0.92488 1.21174 0.96740 1.01260 0.98204 1.21196 0.91575 0.94199 0.97947 1.20280 0.97178 1.06460 0.94735 1.19357 0.85546 0.77507 0.86177 1.90749 1.79680 1.35384 1.27446 1.23155 0.80812 0.98434 1.01668 0.92903 0.80234 0.89736 0.90676 0.91110 0.91389 0.80850 0.84801 0.84948 0.84984 0.84105 0.91047 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.97 10.44 -15.06 -0.16 -7.13 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.74 -16.76 4.95 -51.63 -0.26 -17.02 16 10 C 0.18 3.18 3.61 -66.07 -0.24 2.94 16 11 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 12 C -0.14 -1.90 6.71 -24.59 -0.16 -2.06 16 13 C 0.09 1.01 5.12 -2.54 -0.01 0.99 16 14 N -0.62 -9.65 3.33 -171.86 -0.57 -10.22 16 15 C 0.59 10.47 7.45 -12.65 -0.09 10.38 16 16 O -0.52 -11.93 16.60 -8.37 -0.14 -12.07 16 17 C -0.31 -4.32 5.69 -102.78 -0.58 -4.90 16 18 C 0.20 1.53 9.02 -16.73 -0.15 1.38 16 19 N -0.60 -3.12 5.21 -10.42 -0.05 -3.17 16 20 H 0.42 0.38 8.73 -40.82 -0.36 0.03 16 21 C 0.18 1.37 6.66 -83.94 -0.56 0.81 16 22 C -0.17 -0.84 9.86 -39.38 -0.39 -1.23 16 23 C -0.06 -0.30 10.01 -39.56 -0.40 -0.70 16 24 C -0.15 -1.00 10.03 -39.57 -0.40 -1.40 16 25 C -0.03 -0.29 9.65 -39.30 -0.38 -0.67 16 26 C -0.18 -2.03 5.89 -104.81 -0.62 -2.65 16 27 C 0.43 6.67 7.12 -32.20 -0.23 6.44 16 28 O -0.46 -8.99 16.39 -8.56 -0.14 -9.13 16 29 C 0.08 1.57 6.63 -3.04 -0.02 1.55 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.36 8.20 5.62 -40.82 -0.23 7.97 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.04 8.01 -51.92 -0.42 0.63 16 34 H 0.07 0.60 6.60 -51.93 -0.34 0.26 16 35 H 0.07 0.51 7.25 -51.93 -0.38 0.14 16 36 H 0.17 0.84 5.36 -52.49 -0.28 0.56 16 37 H 0.13 0.24 8.06 -52.49 -0.42 -0.19 16 38 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.14 1.39 7.79 -52.49 -0.41 0.98 16 41 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -40.12 350.60 -9.26 -49.37 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.95 Total: 3.92 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -4.49 Total: 3.95 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.11 Total: -58.55 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.28 Total: -21.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -40.12 -9.26 -49.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969179973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.170 kcal (2) G-P(sol) polarization free energy of solvation -40.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds