Wall clock time and date at job start Fri Apr 10 2020 14:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47199 * 270.00007 * 3 2 1 5 5 H 1.48498 * 109.47514 * 30.00212 * 3 2 1 6 6 H 1.48506 * 109.46845 * 150.00257 * 3 2 1 7 7 C 1.38807 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00394 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00306 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00346 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.77807 * 328.23703 * 10 9 7 12 12 C 1.55149 * 110.72279 * 204.99688 * 10 9 7 13 13 C 1.54905 * 101.61874 * 206.15471 * 12 10 9 14 14 N 1.47416 * 104.83360 * 36.99131 * 13 12 10 15 15 C 1.34776 * 125.65277 * 155.83845 * 14 13 12 16 16 O 1.21637 * 120.00378 * 175.94720 * 15 14 13 17 17 C 1.47143 * 119.99601 * 355.94290 * 15 14 13 18 18 C 1.37942 * 120.55097 * 35.95251 * 17 15 14 19 19 N 1.33956 * 122.19952 * 180.02562 * 18 17 15 20 20 H 0.96997 * 118.59661 * 180.02562 * 19 18 17 21 21 C 1.37797 * 122.80528 * 0.02562 * 19 18 17 22 22 C 1.39279 * 120.51600 * 180.02562 * 21 19 18 23 23 C 1.37729 * 119.97170 * 179.97438 * 22 21 19 24 24 C 1.38785 * 120.72552 * 0.04819 * 23 22 21 25 25 C 1.37721 * 120.29701 * 359.97414 * 24 23 22 26 26 C 1.39498 * 119.60270 * 359.97438 * 25 24 23 27 27 C 1.47147 * 120.55000 * 215.67850 * 17 15 14 28 28 O 1.21855 * 121.41406 * 359.97438 * 27 17 15 29 29 C 1.47018 * 108.70487 * 335.87046 * 14 13 12 30 30 H 0.97000 * 120.00119 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99539 * 359.97438 * 9 7 2 32 32 H 1.09000 * 111.00228 * 88.05841 * 12 10 9 33 33 H 1.09008 * 111.00512 * 324.24838 * 12 10 9 34 34 H 1.09005 * 110.36429 * 155.83219 * 13 12 10 35 35 H 1.09004 * 110.36560 * 278.14935 * 13 12 10 36 36 H 1.07997 * 118.90138 * 359.97438 * 18 17 15 37 37 H 1.07995 * 120.01470 * 359.95818 * 22 21 19 38 38 H 1.07999 * 119.63834 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.85968 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.19971 * 180.02562 * 25 24 23 41 41 H 1.09004 * 109.88450 * 120.47531 * 29 14 13 42 42 H 1.09004 * 109.88896 * 241.49185 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5548 -3.2391 0.5361 12 6 5.5253 -2.2889 0.6138 13 6 6.3132 -3.4324 -0.0727 14 7 5.7758 -3.4905 -1.4442 15 6 6.4220 -3.9798 -2.5210 16 8 5.8529 -4.0455 -3.5940 17 6 7.8162 -4.4343 -2.3986 18 6 8.2510 -5.0610 -1.2493 19 7 9.5123 -5.4874 -1.1023 20 1 9.7617 -5.9221 -0.2718 21 6 10.4707 -5.3350 -2.0806 22 6 11.7687 -5.7972 -1.8772 23 6 12.7177 -5.6394 -2.8629 24 6 12.3971 -5.0214 -4.0635 25 6 11.1201 -4.5562 -4.2861 26 6 10.1484 -4.7102 -3.2971 27 6 8.7681 -4.2332 -3.5026 28 8 8.4317 -3.6899 -4.5402 29 6 4.4185 -2.9258 -1.4431 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 5.5021 -2.4247 1.6950 33 1 5.9421 -1.3160 0.3532 34 1 7.3782 -3.2008 -0.0920 35 1 6.1387 -4.3764 0.4435 36 1 7.5514 -5.2122 -0.4406 37 1 12.0311 -6.2789 -0.9469 38 1 13.7224 -6.0002 -2.6996 39 1 13.1523 -4.9046 -4.8266 40 1 10.8722 -4.0759 -5.2211 41 1 4.3719 -2.0712 -2.1182 42 1 3.7009 -3.6844 -1.7557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969179973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:07 Heat of formation + Delta-G solvation = -25.525158 kcal Electronic energy + Delta-G solvation = -26892.038189 eV Core-core repulsion = 23029.556609 eV Total energy + Delta-G solvation = -3862.481579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19933 -40.84068 -39.27311 -38.50987 -38.17798 -36.04831 -33.81819 -33.04254 -32.00060 -31.32926 -30.86768 -29.25829 -26.22633 -25.21906 -24.87522 -23.81679 -23.21991 -21.98756 -21.06604 -19.86624 -19.48138 -19.27039 -18.66834 -17.65657 -17.31537 -16.92521 -16.54105 -16.24916 -16.06811 -15.89508 -15.53798 -15.35229 -15.03051 -14.91423 -14.76869 -14.50127 -14.38852 -14.27801 -13.77406 -13.64639 -13.32032 -13.09207 -13.02134 -12.91890 -12.49500 -12.35547 -12.27834 -12.15606 -11.85805 -11.56541 -11.26562 -11.06587 -10.59453 -10.39839 -10.07611 -9.68910 -9.40800 -8.87257 -8.05055 -5.40338 -0.33887 -0.26102 0.65564 1.34904 1.40767 1.46142 1.50962 1.73901 1.88049 2.27584 2.46055 2.88789 3.08644 3.24848 3.47523 3.51021 3.57353 3.75192 3.79985 3.90419 3.98536 4.26453 4.29500 4.30509 4.32858 4.38406 4.49659 4.54725 4.60523 4.74006 4.88535 4.89387 4.97188 4.99108 5.19515 5.26320 5.36337 5.39730 5.48609 5.50136 5.75350 5.87511 6.15638 6.19221 6.56450 6.78037 7.03867 7.21788 7.78710 7.95989 9.15935 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.002595 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.177858 B =10787.450957 C =11033.401891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.235 4.235 8 H 0.062 0.938 9 N -0.741 5.741 10 C 0.171 3.829 11 H 0.083 0.917 12 C -0.132 4.132 13 C 0.091 3.909 14 N -0.613 5.613 15 C 0.583 3.417 16 O -0.597 6.597 17 C -0.377 4.377 18 C 0.260 3.740 19 N -0.562 5.562 20 H 0.452 0.548 21 C 0.172 3.828 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.144 4.144 25 C -0.065 4.065 26 C -0.208 4.208 27 C 0.412 3.588 28 O -0.539 6.539 29 C 0.091 3.909 30 H 0.258 0.742 31 H 0.367 0.633 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.219 0.781 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.114 0.886 41 H 0.028 0.972 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.954 -17.456 7.531 40.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.254 4.254 3 Si 0.779 3.221 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.101 0.899 12 C -0.170 4.170 13 C -0.030 4.030 14 N -0.347 5.347 15 C 0.375 3.625 16 O -0.479 6.479 17 C -0.389 4.389 18 C 0.122 3.878 19 N -0.170 5.170 20 H 0.295 0.705 21 C 0.071 3.929 22 C -0.164 4.164 23 C -0.072 4.072 24 C -0.163 4.163 25 C -0.084 4.084 26 C -0.212 4.212 27 C 0.300 3.700 28 O -0.424 6.424 29 C -0.035 4.035 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.235 0.765 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.170 0.830 40 H 0.132 0.868 41 H 0.047 0.953 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 35.344 -17.312 6.383 39.870 hybrid contribution -0.965 1.480 -0.963 2.013 sum 34.379 -15.832 5.419 38.235 Atomic orbital electron populations 1.69875 1.07127 1.26709 1.59377 1.25506 0.96106 1.01276 1.02500 0.85468 0.79193 0.79884 0.77591 1.21836 1.21905 1.16590 1.19070 0.82477 0.93600 1.41434 0.92030 1.42721 1.02602 1.03682 1.89264 1.21431 0.93313 0.88186 0.90963 0.89910 1.23104 0.92802 0.98860 1.02254 1.22967 0.99657 1.00647 0.79694 1.48464 1.16189 1.60561 1.09471 1.17744 0.85617 0.76942 0.82219 1.90771 1.69107 1.58339 1.29646 1.21344 0.94856 1.22591 1.00095 1.22625 0.85980 0.83727 0.95465 1.40940 1.06372 1.51402 1.18296 0.70501 1.18050 0.90798 0.96613 0.87485 1.21273 0.88916 1.03214 1.03031 1.21671 1.00971 0.93442 0.91132 1.21499 0.95335 0.99686 0.99752 1.21187 0.93334 0.96363 0.97475 1.20185 0.95149 1.08570 0.97288 1.20153 0.87838 0.76378 0.85636 1.90688 1.81357 1.39980 1.30340 1.22776 0.82882 0.96421 1.01450 0.93314 0.79904 0.86107 0.91349 0.87680 0.86296 0.76452 0.79799 0.80814 0.82969 0.86769 0.95335 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 46.08 27.74 68.60 1.90 47.98 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.24 -10.20 6.52 99.48 0.65 -9.56 16 7 C -0.23 -13.31 10.44 84.03 0.88 -12.43 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 9 N -0.74 -33.77 4.95 -317.26 -1.57 -35.35 16 10 C 0.17 5.98 3.61 46.20 0.17 6.14 16 11 H 0.08 2.82 8.09 -2.39 -0.02 2.81 16 12 C -0.13 -2.92 6.71 31.98 0.21 -2.71 16 13 C 0.09 1.51 5.12 86.86 0.44 1.95 16 14 N -0.61 -19.13 3.33 -815.89 -2.71 -21.85 16 15 C 0.58 21.97 7.45 86.58 0.64 22.61 16 16 O -0.60 -30.61 16.60 8.87 0.15 -30.47 16 17 C -0.38 -10.40 5.69 -18.67 -0.11 -10.50 16 18 C 0.26 2.83 9.02 84.30 0.76 3.59 16 19 N -0.56 -2.27 5.21 -186.89 -0.97 -3.24 16 20 H 0.45 -3.22 8.73 -92.71 -0.81 -4.03 16 21 C 0.17 1.80 6.66 39.01 0.26 2.06 16 22 C -0.14 -0.41 9.86 22.40 0.22 -0.19 16 23 C -0.05 -0.21 10.01 22.28 0.22 0.01 16 24 C -0.14 -1.49 10.03 22.28 0.22 -1.27 16 25 C -0.06 -1.30 9.65 22.45 0.22 -1.08 16 26 C -0.21 -4.62 5.89 -19.98 -0.12 -4.74 16 27 C 0.41 13.83 7.12 27.05 0.19 14.03 16 28 O -0.54 -24.59 16.39 8.17 0.13 -24.46 16 29 C 0.09 3.59 6.63 86.75 0.57 4.16 16 30 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 31 H 0.37 16.17 5.62 -92.71 -0.52 15.65 16 32 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.66 8.01 -2.38 -0.02 1.64 16 34 H 0.11 1.11 6.60 -2.38 -0.02 1.10 16 35 H 0.12 0.87 7.25 -2.39 -0.02 0.86 16 36 H 0.22 0.45 5.36 -2.91 -0.02 0.44 16 37 H 0.18 -1.19 8.06 -2.91 -0.02 -1.22 16 38 H 0.17 -0.62 8.06 -2.91 -0.02 -0.64 16 39 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.11 2.74 7.79 -2.91 -0.02 2.72 16 41 H 0.03 1.34 8.03 -2.38 -0.02 1.32 16 42 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -107.11 350.60 2.19 -104.92 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.30 Total: 7.33 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.26 Total: 18.42 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -4.96 Total: -123.72 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: 0.28 Total: -54.93 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.98 kcal Total: -107.11 2.19 -104.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969179973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.394 kcal (2) G-P(sol) polarization free energy of solvation -107.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds