Wall clock time and date at job start Fri Apr 10 2020 14:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99600 * 2 1 4 4 H 1.48504 * 109.47098 * 274.99819 * 3 2 1 5 5 H 1.48501 * 109.47121 * 35.00062 * 3 2 1 6 6 H 1.48499 * 109.46990 * 155.00217 * 3 2 1 7 7 C 1.38802 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99931 * 185.17450 * 7 2 1 9 9 N 1.36936 * 120.00395 * 5.16977 * 7 2 1 10 10 C 1.47294 * 125.78950 * 354.98906 * 9 7 2 11 11 C 1.54327 * 107.30378 * 178.92504 * 10 9 7 12 12 H 1.08998 * 110.71585 * 96.18221 * 11 10 9 13 13 O 1.42903 * 110.86860 * 219.38093 * 11 10 9 14 14 C 1.55156 * 102.94338 * 337.81821 * 11 10 9 15 15 H 1.09006 * 110.99879 * 277.43102 * 14 11 10 16 16 N 1.46499 * 111.00531 * 153.57986 * 14 11 10 17 17 C 1.34770 * 120.00327 * 161.34860 * 16 14 11 18 18 O 1.21594 * 119.99853 * 359.97438 * 17 16 14 19 19 C 1.47547 * 120.00218 * 179.97438 * 17 16 14 20 20 C 1.38694 * 120.38698 * 354.03681 * 19 17 16 21 21 C 1.38972 * 120.53654 * 179.97438 * 20 19 17 22 22 C 1.36208 * 121.23774 * 0.03136 * 21 20 19 23 23 C 1.40714 * 120.20135 * 359.97149 * 22 21 20 24 24 N 1.33693 * 120.94016 * 179.97438 * 23 22 21 25 25 C 1.31069 * 121.33966 * 180.02562 * 24 23 22 26 26 C 1.39338 * 121.70551 * 359.97438 * 25 24 23 27 27 C 1.36672 * 119.87266 * 0.02562 * 26 25 24 28 28 C 1.40477 * 118.16911 * 359.75424 * 27 26 25 29 29 C 1.47421 * 125.65299 * 174.99223 * 9 7 2 30 30 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.85642 * 59.50038 * 10 9 7 32 32 H 1.09003 * 109.87407 * 298.35717 * 10 9 7 33 33 H 0.96702 * 113.99864 * 293.60959 * 13 11 10 34 34 H 0.97003 * 119.99644 * 341.34642 * 16 14 11 35 35 H 1.07997 * 119.73152 * 359.97438 * 20 19 17 36 36 H 1.07997 * 119.38303 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.89955 * 179.97438 * 22 21 20 38 38 H 1.07994 * 119.14476 * 180.02562 * 25 24 23 39 39 H 1.08003 * 120.06405 * 180.02562 * 26 25 24 40 40 H 1.07997 * 120.92053 * 180.02562 * 27 26 25 41 41 H 1.09000 * 110.37203 * 85.25783 * 29 9 7 42 42 H 1.09007 * 110.36264 * 323.04373 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3948 5 1 1.5043 2.6199 0.8031 6 1 3.5965 1.4121 0.5916 7 6 2.0103 -1.2020 -0.0005 8 1 3.0871 -1.2039 0.0838 9 7 1.3299 -2.3855 -0.1079 10 6 -0.1350 -2.5385 -0.1249 11 6 -0.4375 -4.0430 -0.2879 12 1 -0.6210 -4.5066 0.6814 13 8 -1.5491 -4.2469 -1.1624 14 6 0.8676 -4.5933 -0.9214 15 1 0.8747 -4.4361 -2.0000 16 7 1.0513 -6.0104 -0.5981 17 6 1.8897 -6.7663 -1.3342 18 8 2.4934 -6.2723 -2.2670 19 6 2.0752 -8.1933 -1.0083 20 6 1.4884 -8.7361 0.1252 21 6 1.6606 -10.0799 0.4348 22 6 2.4057 -10.8979 -0.3594 23 6 3.0198 -10.3909 -1.5195 24 7 3.7548 -11.1804 -2.3094 25 6 4.3306 -10.7162 -3.3914 26 6 4.2060 -9.3817 -3.7723 27 6 3.4681 -8.5218 -3.0081 28 6 2.8494 -9.0259 -1.8521 29 6 1.9425 -3.7212 -0.2259 30 1 -0.4850 0.8400 0.0004 31 1 -0.5555 -1.9829 -0.9630 32 1 -0.5564 -2.1751 0.8124 33 1 -2.3896 -3.9204 -0.8129 34 1 0.5694 -6.4045 0.1458 35 1 0.8929 -8.1093 0.7724 36 1 1.1949 -10.4831 1.3219 37 1 2.5256 -11.9389 -0.0980 38 1 4.9160 -11.3857 -4.0041 39 1 4.6916 -9.0276 -4.6696 40 1 3.3600 -7.4842 -3.2877 41 1 2.1747 -4.1208 0.7613 42 1 2.8443 -3.6723 -0.8363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077476661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:33 Heat of formation + Delta-G solvation = 13.793871 kcal Electronic energy + Delta-G solvation = -27047.659512 eV Core-core repulsion = 23186.882934 eV Total energy + Delta-G solvation = -3860.776578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.23214 -39.61562 -37.95283 -37.09557 -35.14409 -34.28407 -33.46224 -31.89166 -30.77120 -30.39603 -28.37473 -27.08345 -25.02340 -24.42305 -23.66144 -23.19471 -20.94798 -20.49378 -20.25631 -18.49923 -17.80884 -17.17927 -16.90556 -16.84242 -16.15713 -15.84397 -15.11560 -15.02190 -14.90382 -14.37819 -14.32376 -14.07139 -13.95048 -13.45137 -13.31364 -12.85914 -12.72738 -12.58056 -12.34364 -12.10714 -11.95201 -11.60472 -11.54399 -11.30875 -10.93709 -10.84587 -10.64531 -10.29130 -10.16246 -9.96783 -9.90184 -9.51078 -9.26624 -9.04856 -8.99394 -8.68417 -8.47902 -6.95613 -5.81170 -3.15057 -0.06762 0.58623 1.58390 2.46285 3.08173 3.14889 3.37412 3.42968 3.44322 3.94657 4.02960 4.34895 4.43192 4.45855 4.55470 4.58825 4.68017 4.85953 4.89228 5.08315 5.10919 5.22061 5.37508 5.50631 5.53635 5.58406 5.62027 5.72813 5.73398 5.92653 5.98098 6.00507 6.06368 6.15065 6.31840 6.47751 6.56019 6.58818 6.80022 7.23895 7.43390 7.52241 7.67211 7.69226 8.04615 8.12313 8.22927 9.10398 9.70852 10.34003 11.31051 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.002774 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.340051 B =10089.777748 C =10769.165970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.105 0.895 16 N -0.705 5.705 17 C 0.560 3.440 18 O -0.530 6.530 19 C -0.104 4.104 20 C -0.077 4.077 21 C -0.110 4.110 22 C -0.070 4.070 23 C 0.118 3.882 24 N -0.481 5.481 25 C 0.132 3.868 26 C -0.181 4.181 27 C -0.057 4.057 28 C -0.067 4.067 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.397 0.603 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.181 0.819 41 H 0.023 0.977 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -21.491 -0.479 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.009 3.991 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.123 0.877 16 N -0.355 5.355 17 C 0.347 3.653 18 O -0.409 6.409 19 C -0.108 4.108 20 C -0.096 4.096 21 C -0.130 4.130 22 C -0.089 4.089 23 C -0.003 4.003 24 N -0.189 5.189 25 C -0.040 4.040 26 C -0.201 4.201 27 C -0.082 4.082 28 C -0.070 4.070 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.197 0.803 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.092 -22.018 -1.172 22.149 hybrid contribution -0.347 1.787 0.574 1.909 sum 1.745 -20.231 -0.598 20.315 Atomic orbital electron populations 1.69919 1.04975 1.25284 1.56785 1.24835 0.95772 0.97800 1.01818 0.86064 0.78668 0.83223 0.77612 1.21457 1.21696 1.20530 1.19088 0.90962 0.82101 1.43614 0.90090 1.44296 1.01096 1.00647 1.86695 1.21884 0.85519 0.87962 1.01966 1.23436 0.85505 0.99040 0.91122 0.92454 1.86469 1.18681 1.84335 1.47306 1.22328 0.94741 0.77822 1.01748 0.87666 1.45871 1.44960 1.10973 1.33649 1.18054 0.79533 0.85343 0.82360 1.90578 1.47312 1.73534 1.29481 1.19951 1.00643 0.93520 0.96702 1.21456 0.97060 0.95701 0.95411 1.20821 0.98885 0.93163 1.00130 1.20981 0.95090 1.00587 0.92204 1.18852 0.96657 0.89346 0.95437 1.68051 1.08532 1.37223 1.05096 1.23007 0.94575 0.93982 0.92436 1.22074 1.01370 0.94769 1.01883 1.22731 0.90965 1.03279 0.91268 1.18652 0.98453 0.93724 0.96191 1.21848 0.94909 0.86186 0.96782 0.93608 0.91685 0.93519 0.77557 0.76756 0.84875 0.84492 0.84382 0.82411 0.84346 0.80281 0.95906 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.36 55.49 0.58 -25.82 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.89 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.60 -15.07 3.40 -169.86 -0.58 -15.64 16 10 C 0.15 3.51 5.17 -2.91 -0.02 3.50 16 11 C 0.07 1.22 3.95 -24.90 -0.10 1.12 16 12 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 13 O -0.56 -9.30 13.40 -35.23 -0.47 -9.78 16 14 C 0.14 2.52 3.04 -65.78 -0.20 2.32 16 15 H 0.11 2.20 7.73 -51.93 -0.40 1.79 16 16 N -0.70 -10.11 5.18 -52.76 -0.27 -10.39 16 17 C 0.56 8.54 7.73 -12.47 -0.10 8.44 16 18 O -0.53 -9.64 13.15 5.28 0.07 -9.57 16 19 C -0.10 -1.33 5.90 -104.66 -0.62 -1.95 16 20 C -0.08 -0.74 9.51 -39.14 -0.37 -1.11 16 21 C -0.11 -0.90 9.92 -40.04 -0.40 -1.30 16 22 C -0.07 -0.68 9.96 -39.38 -0.39 -1.07 16 23 C 0.12 1.47 6.60 -84.87 -0.56 0.91 16 24 N -0.48 -5.85 10.34 -10.99 -0.11 -5.97 16 25 C 0.13 1.33 11.15 -17.47 -0.19 1.14 16 26 C -0.18 -1.89 10.03 -39.74 -0.40 -2.29 16 27 C -0.06 -0.76 9.29 -39.30 -0.37 -1.12 16 28 C -0.07 -0.90 5.76 -106.53 -0.61 -1.52 16 29 C 0.13 2.72 6.92 -2.53 -0.02 2.71 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.07 1.70 7.18 -51.93 -0.37 1.33 16 32 H 0.05 1.16 7.65 -51.93 -0.40 0.76 16 33 H 0.38 4.66 9.12 45.56 0.42 5.08 16 34 H 0.40 4.41 6.58 -40.82 -0.27 4.15 16 35 H 0.13 0.93 6.43 -52.49 -0.34 0.60 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.18 2.64 4.96 -52.50 -0.26 2.37 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -34.06 349.72 -9.26 -43.32 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.12 Total: 8.71 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -4.59 Total: 3.00 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.39 Total: -57.81 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.40 Total: -19.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.06 -9.26 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077476661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.116 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds