Wall clock time and date at job start Fri Apr 10 2020 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00568 * 2 1 4 4 H 1.48497 * 109.47635 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46801 * 299.99712 * 3 2 1 6 6 H 1.48499 * 109.47235 * 59.99230 * 3 2 1 7 7 C 1.38812 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64683 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.26978 * 178.95894 * 10 9 7 12 12 H 1.09006 * 110.87337 * 96.24647 * 11 10 9 13 13 O 1.42905 * 110.71791 * 219.44260 * 11 10 9 14 14 C 1.55149 * 102.94474 * 337.80696 * 11 10 9 15 15 H 1.08996 * 111.00433 * 277.39084 * 14 11 10 16 16 N 1.46505 * 111.00424 * 153.57473 * 14 11 10 17 17 C 1.34777 * 119.99724 * 155.00395 * 16 14 11 18 18 O 1.21563 * 120.00284 * 359.97438 * 17 16 14 19 19 C 1.47759 * 119.99444 * 179.72311 * 17 16 14 20 20 C 1.40598 * 120.27047 * 0.27637 * 19 17 16 21 21 N 1.30807 * 121.53636 * 179.97438 * 20 19 17 22 22 C 1.33821 * 121.71877 * 0.02562 * 21 20 19 23 23 C 1.40525 * 120.81817 * 179.97438 * 22 21 20 24 24 C 1.36129 * 119.81862 * 180.08925 * 23 22 21 25 25 C 1.39347 * 121.08660 * 359.91972 * 24 23 22 26 26 C 1.36143 * 120.82871 * 0.05843 * 25 24 23 27 27 C 1.40536 * 119.62265 * 359.97438 * 26 25 24 28 28 C 1.39020 * 120.26380 * 179.97438 * 19 17 16 29 29 C 1.47426 * 125.65164 * 179.97438 * 9 7 2 30 30 H 0.97007 * 119.99277 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88257 * 59.54583 * 10 9 7 32 32 H 1.09000 * 110.01238 * 298.44526 * 10 9 7 33 33 H 0.96693 * 114.00028 * 293.52079 * 13 11 10 34 34 H 0.97000 * 119.99792 * 334.99963 * 16 14 11 35 35 H 1.07991 * 119.23108 * 0.02562 * 20 19 17 36 36 H 1.08006 * 120.09092 * 0.02681 * 23 22 21 37 37 H 1.07996 * 119.45667 * 179.97438 * 24 23 22 38 38 H 1.07994 * 119.58316 * 180.02562 * 25 24 23 39 39 H 1.08005 * 120.18191 * 179.97438 * 26 25 24 40 40 H 1.08000 * 121.01837 * 359.97438 * 28 19 17 41 41 H 1.08998 * 110.36647 * 85.26978 * 29 9 7 42 42 H 1.08999 * 110.36873 * 322.94831 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 -0.1377 -2.5326 0.0005 11 6 -0.4487 -4.0440 -0.0262 12 1 -0.6337 -4.4204 0.9799 13 8 -1.5631 -4.3158 -0.8785 14 6 0.8516 -4.6561 -0.6109 15 1 0.8563 -4.5969 -1.6992 16 7 1.0287 -6.0395 -0.1622 17 6 1.7589 -6.8990 -0.9002 18 8 2.2702 -6.5265 -1.9382 19 6 1.9426 -8.2925 -0.4445 20 6 1.3533 -8.7295 0.7549 21 7 1.4993 -9.9575 1.1812 22 6 2.2160 -10.8585 0.4991 23 6 2.3609 -12.1727 0.9751 24 6 3.0961 -13.0724 0.2656 25 6 3.7109 -12.7140 -0.9324 26 6 3.5933 -11.4507 -1.4263 27 6 2.8423 -10.4957 -0.7199 28 6 2.6942 -9.1839 -1.2016 29 6 1.9332 -3.7312 0.0005 30 1 -0.4849 0.8402 -0.0004 31 1 -0.5577 -2.0521 -0.8831 32 1 -0.5569 -2.0839 0.9011 33 1 -2.4007 -3.9545 -0.5578 34 1 0.6204 -6.3368 0.6659 35 1 0.7658 -8.0353 1.3373 36 1 1.8911 -12.4680 1.9017 37 1 3.2040 -14.0807 0.6370 38 1 4.2882 -13.4473 -1.4757 39 1 4.0746 -11.1841 -2.3557 40 1 3.1536 -8.8765 -2.1294 41 1 2.1663 -4.0421 1.0189 42 1 2.8326 -3.7407 -0.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077741468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:16 Heat of formation + Delta-G solvation = 5.914151 kcal Electronic energy + Delta-G solvation = -26551.666087 eV Core-core repulsion = 22690.547819 eV Total energy + Delta-G solvation = -3861.118269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23154 -39.66246 -37.96419 -37.14004 -35.10554 -34.21889 -33.72222 -31.92693 -30.90841 -30.38730 -28.41394 -27.13482 -25.12049 -24.39104 -24.06101 -22.42494 -21.28844 -20.54066 -20.30209 -18.56943 -18.09720 -17.51360 -16.90158 -16.78334 -16.06615 -15.64311 -15.12650 -14.93439 -14.69994 -14.55544 -14.30263 -14.08259 -14.03648 -13.74699 -13.39669 -13.13144 -12.71051 -12.52101 -12.15358 -12.12126 -12.08181 -11.84131 -11.58002 -11.28424 -10.91955 -10.84340 -10.80667 -10.33404 -10.12932 -9.94572 -9.87021 -9.68531 -9.35652 -9.18193 -8.90772 -8.67479 -8.61484 -6.93754 -5.78307 -3.12876 -0.07347 0.29396 1.55419 2.30403 3.10610 3.13952 3.37954 3.43865 3.46213 3.81257 3.85951 4.22495 4.38121 4.41821 4.46828 4.49939 4.59646 4.68580 4.76976 4.88776 5.05766 5.15601 5.40495 5.41995 5.52775 5.54791 5.55501 5.63411 5.69025 5.78384 5.93145 6.02225 6.04823 6.08112 6.12868 6.41843 6.43717 6.57066 6.81998 7.30264 7.44499 7.50795 7.56179 7.71980 8.09466 8.14724 8.23990 9.13120 9.73089 10.35728 11.33544 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.002354 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.074576 B =11889.603556 C =12297.943400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.108 0.892 16 N -0.707 5.707 17 C 0.563 3.437 18 O -0.531 6.531 19 C -0.187 4.187 20 C 0.164 3.836 21 N -0.476 5.476 22 C 0.140 3.860 23 C -0.098 4.098 24 C -0.093 4.093 25 C -0.122 4.122 26 C -0.085 4.085 27 C -0.113 4.113 28 C 0.012 3.988 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.377 0.623 34 H 0.396 0.604 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.025 0.975 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -25.197 1.626 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.032 3.968 15 H 0.126 0.874 16 N -0.357 5.357 17 C 0.349 3.651 18 O -0.409 6.409 19 C -0.192 4.192 20 C -0.010 4.010 21 N -0.184 5.184 22 C 0.019 3.981 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.115 4.115 28 C -0.015 4.015 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.043 0.957 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.759 -25.345 1.310 25.529 hybrid contribution 0.107 1.376 0.067 1.382 sum 2.866 -23.969 1.377 24.179 Atomic orbital electron populations 1.69932 1.04936 1.25126 1.57120 1.24823 0.95800 0.97819 1.01989 0.85987 0.78761 0.83426 0.77248 1.20411 1.21647 1.21711 1.19133 0.90585 0.82018 1.43847 0.90064 1.44248 1.01214 0.99872 1.87421 1.21824 0.85393 0.87726 1.02265 1.23474 0.85528 0.98568 0.91643 0.92392 1.86467 1.18773 1.80009 1.51542 1.22330 0.94692 0.78476 1.01265 0.87402 1.45829 1.52529 1.11571 1.25788 1.17915 0.78938 0.84312 0.83965 1.90804 1.48291 1.78112 1.23656 1.21035 1.03925 0.95754 0.98497 1.23074 0.93709 0.92420 0.91836 1.67962 1.15932 1.02186 1.32275 1.19026 0.93901 0.94193 0.90974 1.20838 0.99334 0.90848 1.00665 1.20993 0.95894 0.99798 0.94604 1.20957 1.00039 0.96572 0.96438 1.21099 0.97020 0.92834 0.99381 1.18848 1.01029 0.94821 0.96778 1.22003 0.91135 0.90396 0.97976 1.21847 0.94820 0.85723 0.97367 0.93678 0.92048 0.93226 0.77605 0.76837 0.82035 0.84473 0.85098 0.85247 0.84778 0.82777 0.95745 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.18 3.39 -170.08 -0.58 -15.75 16 10 C 0.15 3.58 5.15 -3.06 -0.02 3.57 16 11 C 0.07 1.22 3.98 -24.90 -0.10 1.12 16 12 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.54 13.39 -35.23 -0.47 -10.02 16 14 C 0.14 2.54 3.15 -65.79 -0.21 2.33 16 15 H 0.11 2.30 7.54 -51.93 -0.39 1.91 16 16 N -0.71 -10.29 5.15 -52.71 -0.27 -10.56 16 17 C 0.56 8.63 7.77 -12.37 -0.10 8.53 16 18 O -0.53 -10.08 16.02 5.31 0.09 -10.00 16 19 C -0.19 -2.33 5.89 -104.83 -0.62 -2.95 16 20 C 0.16 1.81 10.68 -17.10 -0.18 1.63 16 21 N -0.48 -5.66 10.30 -10.68 -0.11 -5.77 16 22 C 0.14 1.56 6.61 -84.79 -0.56 1.00 16 23 C -0.10 -0.85 9.97 -39.48 -0.39 -1.25 16 24 C -0.09 -0.62 9.94 -39.93 -0.40 -1.01 16 25 C -0.12 -0.80 9.96 -39.92 -0.40 -1.19 16 26 C -0.08 -0.67 9.77 -39.47 -0.39 -1.06 16 27 C -0.11 -1.19 5.74 -106.82 -0.61 -1.80 16 28 C 0.01 0.13 9.46 -38.43 -0.36 -0.23 16 29 C 0.13 2.73 6.93 -2.54 -0.02 2.71 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 32 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 33 H 0.38 4.82 9.12 45.56 0.42 5.23 16 34 H 0.40 4.48 6.59 -40.82 -0.27 4.21 16 35 H 0.16 1.36 6.37 -52.49 -0.33 1.02 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.15 1.64 7.70 -52.49 -0.40 1.24 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -34.65 354.98 -9.29 -43.95 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.25 Total: 7.25 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -4.60 Total: 4.60 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.39 Total: -58.12 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.39 Total: -20.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.65 -9.29 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077741468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.860 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds