Wall clock time and date at job start Fri Apr 10 2020 14:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00568 * 2 1 4 4 H 1.48497 * 109.47635 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46801 * 299.99712 * 3 2 1 6 6 H 1.48499 * 109.47235 * 59.99230 * 3 2 1 7 7 C 1.38812 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64683 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.26978 * 178.95894 * 10 9 7 12 12 H 1.09006 * 110.87337 * 96.24647 * 11 10 9 13 13 O 1.42905 * 110.71791 * 219.44260 * 11 10 9 14 14 C 1.55149 * 102.94474 * 337.80696 * 11 10 9 15 15 H 1.08996 * 111.00433 * 277.39084 * 14 11 10 16 16 N 1.46505 * 111.00424 * 153.57473 * 14 11 10 17 17 C 1.34777 * 119.99724 * 155.00395 * 16 14 11 18 18 O 1.21563 * 120.00284 * 359.97438 * 17 16 14 19 19 C 1.47759 * 119.99444 * 179.72311 * 17 16 14 20 20 C 1.40598 * 120.27047 * 0.27637 * 19 17 16 21 21 N 1.30807 * 121.53636 * 179.97438 * 20 19 17 22 22 C 1.33821 * 121.71877 * 0.02562 * 21 20 19 23 23 C 1.40525 * 120.81817 * 179.97438 * 22 21 20 24 24 C 1.36129 * 119.81862 * 180.08925 * 23 22 21 25 25 C 1.39347 * 121.08660 * 359.91972 * 24 23 22 26 26 C 1.36143 * 120.82871 * 0.05843 * 25 24 23 27 27 C 1.40536 * 119.62265 * 359.97438 * 26 25 24 28 28 C 1.39020 * 120.26380 * 179.97438 * 19 17 16 29 29 C 1.47426 * 125.65164 * 179.97438 * 9 7 2 30 30 H 0.97007 * 119.99277 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88257 * 59.54583 * 10 9 7 32 32 H 1.09000 * 110.01238 * 298.44526 * 10 9 7 33 33 H 0.96693 * 114.00028 * 293.52079 * 13 11 10 34 34 H 0.97000 * 119.99792 * 334.99963 * 16 14 11 35 35 H 1.07991 * 119.23108 * 0.02562 * 20 19 17 36 36 H 1.08006 * 120.09092 * 0.02681 * 23 22 21 37 37 H 1.07996 * 119.45667 * 179.97438 * 24 23 22 38 38 H 1.07994 * 119.58316 * 180.02562 * 25 24 23 39 39 H 1.08005 * 120.18191 * 179.97438 * 26 25 24 40 40 H 1.08000 * 121.01837 * 359.97438 * 28 19 17 41 41 H 1.08998 * 110.36647 * 85.26978 * 29 9 7 42 42 H 1.08999 * 110.36873 * 322.94831 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 -0.1377 -2.5326 0.0005 11 6 -0.4487 -4.0440 -0.0262 12 1 -0.6337 -4.4204 0.9799 13 8 -1.5631 -4.3158 -0.8785 14 6 0.8516 -4.6561 -0.6109 15 1 0.8563 -4.5969 -1.6992 16 7 1.0287 -6.0395 -0.1622 17 6 1.7589 -6.8990 -0.9002 18 8 2.2702 -6.5265 -1.9382 19 6 1.9426 -8.2925 -0.4445 20 6 1.3533 -8.7295 0.7549 21 7 1.4993 -9.9575 1.1812 22 6 2.2160 -10.8585 0.4991 23 6 2.3609 -12.1727 0.9751 24 6 3.0961 -13.0724 0.2656 25 6 3.7109 -12.7140 -0.9324 26 6 3.5933 -11.4507 -1.4263 27 6 2.8423 -10.4957 -0.7199 28 6 2.6942 -9.1839 -1.2016 29 6 1.9332 -3.7312 0.0005 30 1 -0.4849 0.8402 -0.0004 31 1 -0.5577 -2.0521 -0.8831 32 1 -0.5569 -2.0839 0.9011 33 1 -2.4007 -3.9545 -0.5578 34 1 0.6204 -6.3368 0.6659 35 1 0.7658 -8.0353 1.3373 36 1 1.8911 -12.4680 1.9017 37 1 3.2040 -14.0807 0.6370 38 1 4.2882 -13.4473 -1.4757 39 1 4.0746 -11.1841 -2.3557 40 1 3.1536 -8.8765 -2.1294 41 1 2.1663 -4.0421 1.0189 42 1 2.8326 -3.7407 -0.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077741468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:15 Heat of formation + Delta-G solvation = -20.364188 kcal Electronic energy + Delta-G solvation = -26552.805602 eV Core-core repulsion = 22690.547819 eV Total energy + Delta-G solvation = -3862.257783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.06103 -40.89214 -39.43416 -37.91555 -36.68420 -35.71031 -34.52520 -33.71905 -31.88081 -31.06752 -30.12425 -28.78882 -26.62331 -25.41002 -25.11433 -23.11758 -22.62632 -22.11823 -21.84025 -19.58592 -19.02770 -18.89759 -18.32407 -18.01521 -17.26412 -16.87883 -16.43269 -16.24876 -15.81552 -15.62244 -15.48335 -15.24011 -15.16679 -14.70893 -14.51335 -14.40497 -14.24256 -14.12284 -13.75958 -13.21995 -13.17201 -12.79758 -12.77309 -12.74572 -12.73571 -12.43233 -12.06310 -11.90148 -11.62627 -11.56747 -11.46704 -10.94999 -10.78715 -10.57163 -10.29973 -9.85504 -9.31285 -8.97672 -7.89601 -5.26686 -0.84709 -0.44073 0.82135 1.45386 1.46815 1.47554 1.57102 1.87641 2.18046 2.46916 3.04536 3.08537 3.14846 3.31517 3.49375 3.53391 3.54374 3.67261 3.77072 3.86136 3.95254 4.05026 4.17367 4.21722 4.32116 4.41848 4.43944 4.53791 4.69157 4.78299 4.81390 4.93166 4.96716 5.04875 5.32128 5.35621 5.38250 5.40912 5.44378 5.46169 5.66455 5.83833 6.12869 6.38387 6.72703 6.87042 7.03573 7.06402 7.68410 8.30581 9.20328 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.002354 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.074576 B =11889.603556 C =12297.943400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.161 3.839 11 C 0.090 3.910 12 H 0.098 0.902 13 O -0.569 6.569 14 C 0.153 3.847 15 H 0.076 0.924 16 N -0.693 5.693 17 C 0.567 3.433 18 O -0.575 6.575 19 C -0.203 4.203 20 C 0.163 3.837 21 N -0.491 5.491 22 C 0.119 3.881 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.114 4.114 26 C -0.094 4.094 27 C -0.128 4.128 28 C 0.011 3.989 29 C 0.130 3.870 30 H 0.249 0.751 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.397 0.603 34 H 0.416 0.584 35 H 0.185 0.815 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.045 0.955 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -28.177 2.506 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.030 3.970 12 H 0.115 0.885 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.094 0.906 16 N -0.344 5.344 17 C 0.354 3.646 18 O -0.455 6.455 19 C -0.209 4.209 20 C -0.011 4.011 21 N -0.199 5.199 22 C -0.001 4.001 23 C -0.136 4.136 24 C -0.097 4.097 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.130 4.130 28 C -0.015 4.015 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.247 0.753 34 H 0.254 0.746 35 H 0.202 0.798 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.451 -28.376 2.226 28.672 hybrid contribution -0.047 2.099 -0.248 2.114 sum 3.404 -26.278 1.978 26.571 Atomic orbital electron populations 1.70132 1.06140 1.25467 1.57928 1.25656 0.96758 1.00984 1.02192 0.84980 0.78103 0.79213 0.76831 1.19215 1.21950 1.21413 1.19470 0.91012 0.83413 1.43508 0.90057 1.44517 1.02297 1.00794 1.87360 1.21627 0.84286 0.91307 0.99245 1.23182 0.85704 0.94502 0.93612 0.88452 1.86435 1.19517 1.79816 1.51921 1.21797 0.94170 0.80137 0.99293 0.90559 1.45547 1.52566 1.09797 1.26518 1.18320 0.77800 0.85288 0.83148 1.90780 1.50076 1.79084 1.25606 1.20773 1.06136 0.94059 0.99887 1.23327 0.93656 0.92745 0.91419 1.68003 1.16622 1.02488 1.32745 1.19462 0.94099 0.95159 0.91376 1.21080 1.00566 0.90305 1.01674 1.21455 0.93583 1.00810 0.93842 1.21410 0.99089 0.96472 0.96220 1.21399 0.96795 0.93084 1.00029 1.19023 1.01937 0.94830 0.97177 1.22152 0.90559 0.90990 0.97836 1.21941 0.94908 0.84600 0.98188 0.94136 0.96114 0.95400 0.75305 0.74552 0.79804 0.83561 0.81698 0.81929 0.83021 0.82759 0.93701 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.21 10.31 21.65 0.22 -55.98 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.98 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.25 -13.92 10.28 84.03 0.86 -13.06 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -32.25 3.39 -692.01 -2.35 -34.60 16 10 C 0.16 7.72 5.15 86.73 0.45 8.17 16 11 C 0.09 3.18 3.98 31.78 0.13 3.31 16 12 H 0.10 2.74 8.00 -2.38 -0.02 2.72 16 13 O -0.57 -18.74 13.39 -148.98 -1.99 -20.73 16 14 C 0.15 5.65 3.15 46.37 0.15 5.79 16 15 H 0.08 3.36 7.54 -2.39 -0.02 3.35 16 16 N -0.69 -19.62 5.15 -438.94 -2.26 -21.88 16 17 C 0.57 17.46 7.77 86.76 0.67 18.13 16 18 O -0.58 -22.55 16.02 -3.91 -0.06 -22.61 16 19 C -0.20 -5.03 5.89 -20.00 -0.12 -5.15 16 20 C 0.16 3.45 10.68 85.42 0.91 4.36 16 21 N -0.49 -11.18 10.30 -187.69 -1.93 -13.12 16 22 C 0.12 2.51 6.61 40.27 0.27 2.78 16 23 C -0.12 -1.78 9.97 22.34 0.22 -1.56 16 24 C -0.08 -0.74 9.94 22.05 0.22 -0.52 16 25 C -0.11 -1.06 9.96 22.05 0.22 -0.84 16 26 C -0.09 -1.29 9.77 22.34 0.22 -1.07 16 27 C -0.13 -2.55 5.74 -21.29 -0.12 -2.68 16 28 C 0.01 0.25 9.46 23.02 0.22 0.47 16 29 C 0.13 5.53 6.93 86.85 0.60 6.14 16 30 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.02 1.15 7.30 -2.39 -0.02 1.13 16 32 H 0.03 1.44 7.50 -2.39 -0.02 1.42 16 33 H 0.40 9.59 9.12 -74.06 -0.68 8.92 16 34 H 0.42 8.52 6.59 -92.71 -0.61 7.91 16 35 H 0.19 2.75 6.37 -2.92 -0.02 2.73 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 3.38 7.70 -2.91 -0.02 3.35 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.47 354.98 -1.20 -79.67 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.21 Total: 20.09 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.36 Total: 21.18 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -6.32 Total: -125.57 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -2.06 Total: -43.34 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -78.47 -1.20 -79.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077741468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.301 kcal (2) G-P(sol) polarization free energy of solvation -78.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds