Wall clock time and date at job start Fri Apr 10 2020 14:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46701 * 299.99580 * 3 2 1 6 6 H 1.48494 * 109.47419 * 59.99586 * 3 2 1 7 7 C 1.38807 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64487 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.89898 * 10 9 7 12 12 H 1.09001 * 110.71543 * 96.16961 * 11 10 9 13 13 O 1.42898 * 110.71639 * 219.44351 * 11 10 9 14 14 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 15 15 H 1.09002 * 111.00378 * 277.42832 * 14 11 10 16 16 N 1.46500 * 111.00420 * 153.61252 * 14 11 10 17 17 C 1.34773 * 120.00200 * 158.17403 * 16 14 11 18 18 O 1.21551 * 120.00002 * 0.02562 * 17 16 14 19 19 C 1.47874 * 120.00308 * 180.02562 * 17 16 14 20 20 C 1.40573 * 119.70799 * 359.73422 * 19 17 16 21 21 C 1.35820 * 120.73828 * 179.70908 * 20 19 17 22 22 C 1.40543 * 119.98198 * 0.55857 * 21 20 19 23 23 C 1.40821 * 121.13862 * 179.74210 * 22 21 20 24 24 C 1.36546 * 118.20192 * 179.97438 * 23 22 21 25 25 C 1.39421 * 119.94174 * 0.02562 * 24 23 22 26 26 N 1.31018 * 121.70989 * 0.02562 * 25 24 23 27 27 C 1.33750 * 121.35312 * 359.97438 * 26 25 24 28 28 C 1.38407 * 119.71087 * 180.02562 * 19 17 16 29 29 C 1.47418 * 125.65017 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00328 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.88066 * 59.47881 * 10 9 7 32 32 H 1.08996 * 110.00664 * 298.38868 * 10 9 7 33 33 H 0.96701 * 114.00092 * 293.52074 * 13 11 10 34 34 H 0.97001 * 120.00052 * 338.18451 * 16 14 11 35 35 H 1.08001 * 119.63128 * 359.97438 * 20 19 17 36 36 H 1.08000 * 120.00917 * 180.25450 * 21 20 19 37 37 H 1.07997 * 120.89197 * 359.97438 * 23 22 21 38 38 H 1.07998 * 120.03220 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.14421 * 180.02562 * 25 24 23 40 40 H 1.08012 * 120.23117 * 359.97438 * 28 19 17 41 41 H 1.08995 * 110.37279 * 85.33444 * 29 9 7 42 42 H 1.08997 * 110.36990 * 323.00642 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0284 12 1 -0.6323 -4.4186 0.9786 13 8 -1.5622 -4.3155 -0.8815 14 6 0.8524 -4.6558 -0.6126 15 1 0.8581 -4.5953 -1.7009 16 7 1.0289 -6.0396 -0.1654 17 6 1.8117 -6.8808 -0.8696 18 8 2.3717 -6.4911 -1.8756 19 6 1.9894 -8.2778 -0.4186 20 6 1.3434 -8.7205 0.7488 21 6 1.4873 -10.0007 1.1789 22 6 2.2987 -10.8958 0.4608 23 6 2.4694 -12.2269 0.8877 24 6 3.2707 -13.0452 0.1443 25 6 3.8936 -12.5546 -1.0025 26 7 3.7336 -11.3154 -1.3965 27 6 2.9622 -10.4622 -0.7139 28 6 2.7952 -9.1363 -1.1462 29 6 1.9335 -3.7311 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5569 -2.0516 -0.8840 32 1 -0.5573 -2.0845 0.9000 33 1 -2.4001 -3.9544 -0.5612 34 1 0.5822 -6.3506 0.6375 35 1 0.7223 -8.0361 1.3076 36 1 0.9823 -10.3294 2.0752 37 1 1.9797 -12.5905 1.7789 38 1 3.4220 -14.0716 0.4444 39 1 4.5244 -13.2132 -1.5811 40 1 3.2924 -8.7890 -2.0399 41 1 2.1657 -4.0425 1.0189 42 1 2.8334 -3.7402 -0.6143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077860397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:45 Heat of formation + Delta-G solvation = 7.321250 kcal Electronic energy + Delta-G solvation = -26547.123669 eV Core-core repulsion = 22686.066417 eV Total energy + Delta-G solvation = -3861.057252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19778 -39.77204 -38.01348 -36.87393 -35.09754 -34.18534 -33.80312 -31.89549 -30.90726 -30.32766 -28.42210 -27.13974 -25.22983 -24.25862 -24.09506 -22.45050 -21.26319 -20.52782 -20.27261 -18.67700 -17.82690 -17.27905 -16.94729 -16.81015 -16.20032 -15.71832 -15.01420 -14.82588 -14.75784 -14.46158 -14.33100 -14.13220 -13.98456 -13.82785 -13.41618 -13.16861 -12.70052 -12.53813 -12.18051 -12.10203 -11.98823 -11.85227 -11.52441 -11.27238 -10.91468 -10.88312 -10.83286 -10.15534 -9.96919 -9.91866 -9.86001 -9.83795 -9.35488 -9.16741 -8.87739 -8.66269 -8.59666 -6.92560 -5.77305 -3.11777 -0.05063 0.31311 1.57422 2.24118 3.13244 3.22402 3.38760 3.44754 3.47150 3.83472 3.94810 4.19521 4.33659 4.42703 4.48551 4.54759 4.59745 4.64357 4.80400 4.85935 5.11537 5.16867 5.41986 5.42308 5.51430 5.55016 5.55532 5.64397 5.70522 5.78857 5.93091 5.98954 6.06138 6.10089 6.15437 6.40462 6.47621 6.60795 6.85093 7.30591 7.45543 7.54653 7.60929 7.73080 8.09293 8.16022 8.30316 9.14256 9.74199 10.36914 11.34621 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.002360 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.669204 B =11860.472095 C =12324.211910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.106 0.894 16 N -0.707 5.707 17 C 0.555 3.445 18 O -0.528 6.528 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.089 4.089 23 C -0.061 4.061 24 C -0.170 4.170 25 C 0.128 3.872 26 N -0.465 5.465 27 C 0.117 3.883 28 C -0.024 4.024 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.396 0.604 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.024 0.976 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 -26.255 5.260 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.124 0.876 16 N -0.358 5.358 17 C 0.342 3.658 18 O -0.405 6.405 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.087 4.087 24 C -0.190 4.190 25 C -0.045 4.045 26 N -0.173 5.173 27 C -0.004 4.004 28 C -0.044 4.044 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.488 -25.588 3.418 25.858 hybrid contribution -0.703 0.655 1.631 1.894 sum 0.784 -24.933 5.050 25.451 Atomic orbital electron populations 1.69928 1.04933 1.25114 1.57214 1.24821 0.95799 0.97811 1.02022 0.85986 0.78782 0.83424 0.77235 1.20396 1.21643 1.21731 1.19141 0.90603 0.82023 1.43738 0.90052 1.44255 1.01199 0.99901 1.87412 1.21822 0.85431 0.87712 1.02244 1.23455 0.85525 0.98622 0.91569 0.92461 1.86473 1.18775 1.80031 1.51473 1.22314 0.94638 0.78611 1.01142 0.87589 1.45829 1.49111 1.11893 1.28978 1.18129 0.79368 0.84740 0.83605 1.90812 1.47292 1.77361 1.25042 1.19995 1.00256 0.94479 0.96786 1.21010 0.98233 0.96326 0.95091 1.20861 0.98347 0.93001 0.99822 1.18962 0.98724 0.95108 0.96297 1.21514 0.96134 0.92027 0.99022 1.21965 0.98743 1.01491 0.96807 1.23027 0.95936 0.91824 0.93757 1.68043 1.14940 1.03662 1.30617 1.18776 0.95340 0.94070 0.92178 1.21276 0.94333 0.89854 0.98900 1.21851 0.94907 0.85669 0.97327 0.93694 0.92049 0.93254 0.77635 0.76849 0.84931 0.84588 0.84163 0.84342 0.82174 0.83025 0.95802 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.31 55.49 0.57 -26.18 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.34 3.39 -170.08 -0.58 -15.92 16 10 C 0.15 3.61 5.15 -3.06 -0.02 3.60 16 11 C 0.07 1.24 3.96 -24.90 -0.10 1.14 16 12 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.58 13.39 -35.23 -0.47 -10.05 16 14 C 0.14 2.60 3.09 -65.78 -0.20 2.40 16 15 H 0.11 2.31 7.63 -51.93 -0.40 1.91 16 16 N -0.71 -10.57 5.16 -52.66 -0.27 -10.84 16 17 C 0.56 8.89 7.77 -12.32 -0.10 8.79 16 18 O -0.53 -10.57 15.99 5.32 0.09 -10.48 16 19 C -0.11 -1.41 5.87 -105.01 -0.62 -2.03 16 20 C -0.09 -0.84 9.44 -39.57 -0.37 -1.21 16 21 C -0.10 -0.83 9.74 -39.58 -0.39 -1.22 16 22 C -0.09 -0.85 5.75 -106.73 -0.61 -1.46 16 23 C -0.06 -0.42 9.88 -39.22 -0.39 -0.80 16 24 C -0.17 -1.04 10.03 -39.75 -0.40 -1.44 16 25 C 0.13 1.02 11.15 -17.46 -0.19 0.83 16 26 N -0.46 -5.42 10.34 -10.98 -0.11 -5.54 16 27 C 0.12 1.41 6.60 -84.87 -0.56 0.85 16 28 C -0.02 -0.32 9.56 -38.68 -0.37 -0.69 16 29 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 32 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 33 H 0.38 4.81 9.12 45.56 0.42 5.23 16 34 H 0.40 4.56 6.52 -40.82 -0.27 4.29 16 35 H 0.13 0.95 6.34 -52.49 -0.33 0.61 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 2.15 7.61 -52.48 -0.40 1.75 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -35.59 354.80 -9.28 -44.87 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.25 Total: 7.00 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -4.58 Total: 4.67 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.39 Total: -58.48 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.39 Total: -20.53 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.59 -9.28 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077860397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.192 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds