Wall clock time and date at job start Fri Apr 10 2020 14:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48500 * 109.46863 * 239.99839 * 3 2 1 5 5 H 1.48494 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47199 * 119.99899 * 3 2 1 7 7 C 1.38813 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64659 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.26940 * 178.90376 * 10 9 7 12 12 H 1.09001 * 110.71866 * 96.34280 * 11 10 9 13 13 O 1.42898 * 110.71918 * 219.44016 * 11 10 9 14 14 C 1.55163 * 103.10258 * 337.89575 * 11 10 9 15 15 H 1.08998 * 110.99943 * 277.33463 * 14 11 10 16 16 N 1.46495 * 111.00382 * 153.48983 * 14 11 10 17 17 C 1.34778 * 120.00089 * 154.99838 * 16 14 11 18 18 O 1.21586 * 119.99759 * 359.97438 * 17 16 14 19 19 C 1.47568 * 120.00127 * 179.97438 * 17 16 14 20 20 C 1.38702 * 120.43455 * 354.08770 * 19 17 16 21 21 C 1.39006 * 120.75159 * 179.97438 * 20 19 17 22 22 C 1.36333 * 121.18854 * 359.97438 * 21 20 19 23 23 C 1.40354 * 119.93470 * 0.02562 * 22 21 20 24 24 C 1.40687 * 122.10457 * 180.02562 * 23 22 21 25 25 C 1.36270 * 118.66062 * 179.27371 * 24 23 22 26 26 N 1.32504 * 121.84017 * 0.66998 * 25 24 23 27 27 C 1.31313 * 122.72409 * 359.53393 * 26 25 24 28 28 C 1.40141 * 119.91614 * 0.02562 * 27 26 25 29 29 C 1.47420 * 125.64741 * 179.97438 * 9 7 2 30 30 H 0.97002 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.88549 * 59.48346 * 10 9 7 32 32 H 1.08998 * 110.00818 * 298.38744 * 10 9 7 33 33 H 0.96691 * 114.00366 * 296.15702 * 13 11 10 34 34 H 0.97004 * 120.00580 * 334.99408 * 16 14 11 35 35 H 1.08001 * 119.62429 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.40067 * 180.02562 * 21 20 19 37 37 H 1.08006 * 120.03162 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.66764 * 359.94569 * 24 23 22 39 39 H 1.07999 * 119.07515 * 180.20163 * 25 24 23 40 40 H 1.07999 * 120.03979 * 180.02562 * 27 26 25 41 41 H 1.09002 * 110.37117 * 323.00301 * 29 9 7 42 42 H 1.09000 * 110.36625 * 85.32577 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0283 12 1 -0.6354 -4.4179 0.9784 13 8 -1.5624 -4.3155 -0.8813 14 6 0.8514 -4.6600 -0.6099 15 1 0.8579 -4.6025 -1.6984 16 7 1.0252 -6.0427 -0.1582 17 6 1.7546 -6.9052 -0.8934 18 8 2.2680 -6.5358 -1.9318 19 6 1.9301 -8.2979 -0.4381 20 6 1.4532 -8.6971 0.8016 21 6 1.6144 -10.0074 1.2369 22 6 2.2429 -10.9365 0.4620 23 6 2.7408 -10.5752 -0.7996 24 6 3.3961 -11.4967 -1.6367 25 6 3.8385 -11.0738 -2.8543 26 7 3.6793 -9.8224 -3.2599 27 6 3.0814 -8.9099 -2.5290 28 6 2.5818 -9.2452 -1.2633 29 6 1.9334 -3.7311 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5571 -2.0517 -0.8841 32 1 -0.5573 -2.0845 0.9000 33 1 -2.3925 -3.9204 -0.5819 34 1 0.6153 -6.3376 0.6700 35 1 0.9509 -7.9818 1.4361 36 1 1.2342 -10.2947 2.2060 37 1 2.3576 -11.9495 0.8185 38 1 3.5359 -12.5212 -1.3253 39 1 4.3395 -11.7764 -3.5037 40 1 2.9749 -7.9023 -2.9028 41 1 2.8334 -3.7403 -0.6144 42 1 2.1657 -4.0424 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077926101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:56 Heat of formation + Delta-G solvation = -14.161664 kcal Electronic energy + Delta-G solvation = -27020.449767 eV Core-core repulsion = 23158.460945 eV Total energy + Delta-G solvation = -3861.988821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13350 -40.80842 -39.40621 -38.18805 -36.68604 -35.73367 -34.08236 -33.55759 -32.17613 -31.05822 -29.97303 -28.72047 -26.54689 -25.54269 -24.47101 -24.30888 -22.45345 -21.97414 -21.69947 -19.33124 -19.01930 -18.67981 -18.22803 -17.71241 -17.32503 -17.15362 -16.60661 -16.18485 -16.09048 -15.78492 -15.60672 -15.11793 -15.02181 -14.63695 -14.48727 -14.36967 -14.21685 -13.80711 -13.67702 -13.23223 -13.16438 -13.03363 -13.00200 -12.78221 -12.70823 -12.53334 -12.14090 -11.89366 -11.55869 -11.18758 -11.11609 -10.85467 -10.77118 -10.40573 -10.27405 -10.16838 -9.10207 -8.97534 -7.89761 -5.26834 -0.91696 -0.11459 0.57047 1.45315 1.48848 1.54714 1.70283 1.88384 2.20621 2.47123 3.08016 3.10946 3.30545 3.42416 3.52482 3.53747 3.71878 3.76007 3.83032 3.87765 3.95683 4.04767 4.14485 4.22547 4.40449 4.42536 4.52263 4.60074 4.71231 4.80631 4.81289 4.88952 4.93292 5.10716 5.20616 5.34876 5.35692 5.40056 5.43901 5.65487 5.68079 5.79668 6.12673 6.41108 6.86129 6.99904 7.03985 7.12802 7.68287 8.30329 9.19742 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.002723 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.197205 B =10281.938984 C =10804.805741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.099 0.901 13 O -0.570 6.570 14 C 0.152 3.848 15 H 0.074 0.926 16 N -0.689 5.689 17 C 0.556 3.444 18 O -0.571 6.571 19 C -0.131 4.131 20 C -0.055 4.055 21 C -0.106 4.106 22 C -0.070 4.070 23 C -0.051 4.051 24 C -0.140 4.140 25 C 0.049 3.951 26 N -0.516 5.516 27 C 0.108 3.892 28 C -0.094 4.094 29 C 0.131 3.869 30 H 0.250 0.750 31 H 0.020 0.980 32 H 0.029 0.971 33 H 0.397 0.603 34 H 0.417 0.583 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.033 0.967 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -27.042 7.182 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.349 5.349 10 C 0.035 3.965 11 C 0.032 3.968 12 H 0.116 0.884 13 O -0.378 6.378 14 C 0.045 3.955 15 H 0.092 0.908 16 N -0.340 5.340 17 C 0.345 3.655 18 O -0.453 6.453 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.056 4.056 24 C -0.159 4.159 25 C -0.094 4.094 26 N -0.225 5.225 27 C -0.061 4.061 28 C -0.097 4.097 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.247 0.753 34 H 0.256 0.744 35 H 0.178 0.822 36 H 0.196 0.804 37 H 0.194 0.806 38 H 0.200 0.800 39 H 0.195 0.805 40 H 0.187 0.813 41 H 0.051 0.949 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.011 -26.783 5.280 27.317 hybrid contribution -0.443 1.651 0.828 1.899 sum 0.568 -25.132 6.109 25.870 Atomic orbital electron populations 1.70108 1.06107 1.25648 1.57709 1.25635 0.96736 1.00918 1.02043 0.85138 0.77223 0.78668 0.78206 1.20796 1.21641 1.19934 1.19400 0.91008 0.83492 1.43928 0.90160 1.44490 1.02293 1.00745 1.87390 1.21645 0.84290 0.91319 0.99262 1.23172 0.85628 0.94466 0.93572 0.88375 1.86436 1.20285 1.77495 1.53557 1.21820 0.94194 0.80281 0.99207 0.90800 1.45507 1.52388 1.09590 1.26555 1.18611 0.77827 0.85797 0.83222 1.90598 1.50018 1.78985 1.25661 1.19699 1.04789 0.91625 0.97503 1.21901 0.94345 0.98303 0.92882 1.21403 0.97837 0.91452 1.01820 1.21671 0.94227 1.02087 0.90824 1.18557 0.98438 0.91833 0.96813 1.22346 0.97724 1.01623 0.94218 1.22831 0.98224 0.92234 0.96126 1.67553 1.14557 1.03458 1.36908 1.24239 0.91373 0.99904 0.90552 1.18969 1.00136 0.94689 0.95890 1.21965 0.94824 0.84605 0.98160 0.94089 0.96196 0.95278 0.75312 0.74395 0.82211 0.80431 0.80581 0.80031 0.80542 0.81341 0.94876 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.91 10.31 21.65 0.22 -55.69 16 2 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 3 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.25 -14.19 10.28 84.03 0.86 -13.32 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -32.15 3.40 -691.58 -2.35 -34.49 16 10 C 0.16 7.63 5.15 86.73 0.45 8.08 16 11 C 0.09 3.19 3.97 31.78 0.13 3.31 16 12 H 0.10 2.67 8.00 -2.39 -0.02 2.65 16 13 O -0.57 -18.62 13.39 -148.98 -1.99 -20.61 16 14 C 0.15 5.59 3.16 46.46 0.15 5.73 16 15 H 0.07 3.29 7.54 -2.39 -0.02 3.27 16 16 N -0.69 -19.05 5.16 -438.74 -2.26 -21.31 16 17 C 0.56 17.30 7.73 86.70 0.67 17.97 16 18 O -0.57 -22.87 13.12 -3.99 -0.05 -22.92 16 19 C -0.13 -3.16 5.90 -19.89 -0.12 -3.28 16 20 C -0.06 -0.79 9.51 22.57 0.21 -0.57 16 21 C -0.11 -0.93 9.93 22.01 0.22 -0.72 16 22 C -0.07 -0.71 9.79 22.34 0.22 -0.49 16 23 C -0.05 -0.94 5.74 -21.30 -0.12 -1.06 16 24 C -0.14 -2.15 9.88 22.41 0.22 -1.93 16 25 C 0.05 1.02 11.07 84.13 0.93 1.95 16 26 N -0.52 -15.39 10.30 -195.72 -2.02 -17.40 16 27 C 0.11 3.47 10.49 85.23 0.89 4.36 16 28 C -0.09 -2.47 5.76 -21.14 -0.12 -2.59 16 29 C 0.13 5.56 6.94 86.93 0.60 6.16 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 32 H 0.03 1.48 7.51 -2.39 -0.02 1.46 16 33 H 0.40 9.53 9.12 -74.06 -0.68 8.85 16 34 H 0.42 7.88 6.64 -92.70 -0.62 7.26 16 35 H 0.16 1.31 6.42 -2.91 -0.02 1.29 16 36 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 38 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.17 6.32 4.98 -2.92 -0.01 6.30 16 41 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -82.27 349.48 -0.97 -83.23 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.20 Total: 20.62 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 5.66 Total: 20.67 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -6.40 Total: -128.90 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -2.05 Total: -43.53 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -82.27 -0.97 -83.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077926101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.069 kcal (2) G-P(sol) polarization free energy of solvation -82.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds