Wall clock time and date at job start Fri Apr 10 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00094 * 2 1 4 4 H 1.48497 * 109.46923 * 274.13339 * 3 2 1 5 5 H 1.48494 * 109.47262 * 34.13484 * 3 2 1 6 6 H 1.48495 * 109.47154 * 154.13773 * 3 2 1 7 7 C 1.38814 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 170.42410 * 7 2 1 9 9 N 1.36934 * 119.99732 * 350.43605 * 7 2 1 10 10 C 1.47423 * 125.65341 * 349.97331 * 9 7 2 11 11 C 1.55122 * 104.94500 * 203.97709 * 10 9 7 12 12 H 1.08988 * 110.94112 * 81.21339 * 11 10 9 13 13 O 1.42904 * 111.15655 * 205.13384 * 11 10 9 14 14 C 1.55156 * 101.48028 * 323.21698 * 11 10 9 15 15 H 1.09005 * 110.72310 * 276.83165 * 14 11 10 16 16 N 1.46500 * 110.71797 * 153.74265 * 14 11 10 17 17 C 1.34775 * 120.00518 * 157.44259 * 16 14 11 18 18 O 1.21549 * 119.99897 * 359.97438 * 17 16 14 19 19 C 1.47889 * 120.00440 * 179.97438 * 17 16 14 20 20 C 1.40596 * 119.72796 * 359.97438 * 19 17 16 21 21 C 1.35847 * 120.95402 * 180.02562 * 20 19 17 22 22 C 1.40494 * 119.87961 * 359.97438 * 21 20 19 23 23 C 1.40475 * 121.83953 * 179.97438 * 22 21 20 24 24 N 1.31220 * 119.93830 * 180.02562 * 23 22 21 25 25 C 1.32552 * 122.80790 * 359.97438 * 24 23 22 26 26 C 1.36229 * 121.84453 * 0.02562 * 25 24 23 27 27 C 1.40760 * 118.67299 * 359.97438 * 26 25 24 28 28 C 1.38526 * 119.73026 * 179.97438 * 19 17 16 29 29 C 1.47026 * 125.64643 * 169.93669 * 9 7 2 30 30 H 0.97005 * 119.99862 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36084 * 322.93424 * 10 9 7 32 32 H 1.08999 * 110.36760 * 85.25597 * 10 9 7 33 33 H 0.96698 * 113.99543 * 292.15640 * 13 11 10 34 34 H 0.97003 * 120.00057 * 337.43698 * 16 14 11 35 35 H 1.08001 * 119.52534 * 359.97438 * 20 19 17 36 36 H 1.08000 * 120.06592 * 179.69660 * 21 20 19 37 37 H 1.07999 * 120.03434 * 359.97347 * 23 22 21 38 38 H 1.07995 * 119.07849 * 180.02562 * 25 24 23 39 39 H 1.07995 * 120.66271 * 180.02562 * 26 25 24 40 40 H 1.07996 * 120.36485 * 0.04298 * 28 19 17 41 41 H 1.08998 * 109.88567 * 59.55407 * 29 9 7 42 42 H 1.08997 * 110.00857 * 298.46302 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4103 2.0968 -1.3964 5 1 1.4942 2.6259 0.7856 6 1 3.5887 1.4165 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1550 9 7 1.3398 -2.3797 0.1981 10 6 -0.0653 -2.5072 0.6255 11 6 -0.1580 -3.9094 1.2824 12 1 0.2043 -3.8828 2.3100 13 8 -1.4919 -4.4189 1.2247 14 6 0.7931 -4.7374 0.3785 15 1 0.2746 -5.0767 -0.5183 16 7 1.3485 -5.8752 1.1155 17 6 1.8108 -6.9503 0.4470 18 8 1.7665 -6.9762 -0.7674 19 6 2.3720 -8.0987 1.1910 20 6 2.4210 -8.0626 2.5957 21 6 2.9317 -9.1032 3.3040 22 6 3.4195 -10.2357 2.6307 23 6 3.9566 -11.3345 3.3218 24 7 4.4022 -12.3732 2.6552 25 6 4.3719 -12.4442 1.3319 26 6 3.8714 -11.4326 0.5691 27 6 3.3741 -10.2838 1.2127 28 6 2.8450 -9.2010 0.4982 29 6 1.9019 -3.7263 0.0184 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3135 -1.7310 1.3494 32 1 -0.7306 -2.4503 -0.2361 33 1 -2.1224 -3.9332 1.7739 34 1 1.3837 -5.8548 2.0846 35 1 2.0480 -7.1946 3.1191 36 1 2.9668 -9.0582 4.3825 37 1 4.0036 -11.3240 4.4007 38 1 4.7548 -13.3288 0.8449 39 1 3.8556 -11.5108 -0.5079 40 1 2.8066 -9.2255 -0.5808 41 1 2.7570 -3.8625 0.6805 42 1 2.2096 -3.8668 -1.0178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077953887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:02 Heat of formation + Delta-G solvation = 4.266218 kcal Electronic energy + Delta-G solvation = -26550.058313 eV Core-core repulsion = 22688.868585 eV Total energy + Delta-G solvation = -3861.189728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21707 -39.83915 -38.07318 -37.09334 -35.16188 -34.25939 -33.32634 -32.10849 -31.32425 -29.96643 -28.49590 -27.20187 -25.30728 -24.20655 -24.10121 -22.60759 -21.25249 -20.68889 -20.13760 -18.57303 -17.97740 -17.19131 -16.98262 -16.77938 -16.30873 -15.67081 -15.28129 -15.01029 -14.85859 -14.44241 -14.25669 -14.05224 -13.96100 -13.88811 -13.37753 -13.16356 -12.94046 -12.68192 -12.50526 -12.28048 -12.03295 -11.58516 -11.45018 -11.31004 -11.01078 -10.87238 -10.60232 -10.23778 -10.08826 -10.01074 -9.87487 -9.83576 -9.45143 -9.39060 -8.88185 -8.70289 -8.45089 -6.93293 -5.84548 -3.18825 -0.11028 0.35097 1.50960 2.29426 3.10991 3.22739 3.34701 3.40599 3.42465 3.76766 4.03513 4.15412 4.30950 4.37751 4.39959 4.52414 4.54654 4.65667 4.81300 4.87863 5.15846 5.23718 5.32053 5.35172 5.36747 5.51544 5.56095 5.58981 5.67272 5.76538 5.91112 5.94201 6.02327 6.08169 6.23913 6.35075 6.38153 6.63178 6.82715 7.20417 7.39926 7.55318 7.58957 7.65258 8.00925 8.12923 8.23359 9.07343 9.68825 10.33605 11.28263 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002376 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.121765 B =11783.680733 C =12078.943251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.151 3.849 11 C 0.065 3.935 12 H 0.062 0.938 13 O -0.564 6.564 14 C 0.142 3.858 15 H 0.104 0.896 16 N -0.707 5.707 17 C 0.554 3.446 18 O -0.532 6.532 19 C -0.106 4.106 20 C -0.092 4.092 21 C -0.091 4.091 22 C -0.099 4.099 23 C 0.143 3.857 24 N -0.485 5.485 25 C 0.071 3.929 26 C -0.143 4.143 27 C -0.034 4.034 28 C -0.045 4.045 29 C 0.129 3.871 30 H 0.254 0.746 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.378 0.622 34 H 0.398 0.602 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.030 0.970 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -20.869 8.861 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.326 5.326 10 C 0.025 3.975 11 C 0.005 3.995 12 H 0.080 0.920 13 O -0.368 6.368 14 C 0.038 3.962 15 H 0.122 0.878 16 N -0.357 5.357 17 C 0.340 3.660 18 O -0.409 6.409 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.101 4.101 23 C -0.029 4.029 24 N -0.193 5.193 25 C -0.072 4.072 26 C -0.163 4.163 27 C -0.039 4.039 28 C -0.064 4.064 29 C 0.002 3.998 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.225 0.775 34 H 0.233 0.767 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.048 0.952 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.637 -21.858 7.870 23.689 hybrid contribution -0.168 2.102 0.299 2.130 sum 4.469 -19.755 8.169 21.840 Atomic orbital electron populations 1.69930 1.05009 1.25424 1.56174 1.24857 0.95685 0.97966 1.01770 0.86083 0.78716 0.83190 0.77651 1.21463 1.21540 1.20524 1.19038 0.91234 0.82394 1.43266 0.90320 1.44272 1.09132 0.99791 1.79420 1.22041 0.86854 0.90541 0.98049 1.23636 0.81940 0.96280 0.97648 0.92048 1.86434 1.19104 1.59022 1.72267 1.22049 0.93766 0.84728 0.95687 0.87839 1.45906 1.62281 1.17327 1.10209 1.18201 0.78162 0.82280 0.87334 1.90796 1.55852 1.80944 1.13298 1.20112 1.01620 0.95489 0.93817 1.21018 0.98271 0.99052 0.92754 1.20877 0.97695 0.92162 1.00327 1.19161 1.00675 0.96785 0.93488 1.23253 0.91937 0.87490 1.00194 1.67389 1.15433 1.26436 1.10045 1.22200 0.97241 0.98568 0.89191 1.22020 0.99102 0.93531 1.01615 1.18154 0.98095 0.94895 0.92771 1.21459 0.93459 0.90533 1.00903 1.21636 0.93967 0.85346 0.98810 0.93535 0.90603 0.94166 0.77534 0.76694 0.84983 0.84228 0.81756 0.82813 0.84036 0.83454 0.95162 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.68 55.49 0.59 -25.62 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.58 29.56 -169.99 -5.03 16.56 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.33 10.24 -15.06 -0.15 -6.49 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 N -0.60 -14.99 3.40 -169.94 -0.58 -15.57 16 10 C 0.15 3.49 5.17 -2.41 -0.01 3.47 16 11 C 0.07 1.16 4.06 -24.47 -0.10 1.06 16 12 H 0.06 0.97 8.00 -51.94 -0.42 0.56 16 13 O -0.56 -9.19 13.48 -35.23 -0.47 -9.66 16 14 C 0.14 2.61 3.00 -66.10 -0.20 2.41 16 15 H 0.10 2.13 7.62 -51.93 -0.40 1.74 16 16 N -0.71 -10.32 5.06 -52.96 -0.27 -10.58 16 17 C 0.55 8.46 7.77 -12.31 -0.10 8.37 16 18 O -0.53 -10.08 15.99 5.32 0.09 -10.00 16 19 C -0.11 -1.26 5.87 -104.95 -0.62 -1.88 16 20 C -0.09 -0.84 9.44 -39.55 -0.37 -1.21 16 21 C -0.09 -0.70 9.77 -39.59 -0.39 -1.09 16 22 C -0.10 -0.90 5.75 -106.78 -0.61 -1.52 16 23 C 0.14 1.18 11.04 -16.97 -0.19 1.00 16 24 N -0.49 -4.72 10.29 -13.15 -0.14 -4.86 16 25 C 0.07 0.60 11.07 -17.96 -0.20 0.40 16 26 C -0.14 -1.22 9.88 -39.35 -0.39 -1.61 16 27 C -0.03 -0.35 5.74 -106.82 -0.61 -0.96 16 28 C -0.04 -0.50 9.38 -38.78 -0.36 -0.87 16 29 C 0.13 2.76 7.00 -3.06 -0.02 2.74 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.08 1.89 6.94 -51.93 -0.36 1.53 16 32 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.38 4.56 9.12 45.56 0.42 4.98 16 34 H 0.40 4.55 6.52 -40.82 -0.27 4.29 16 35 H 0.13 0.92 6.34 -52.49 -0.33 0.59 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.65 7.62 -52.49 -0.40 1.25 16 41 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -34.54 355.14 -9.12 -43.66 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.25 Total: 7.16 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -4.42 Total: 3.56 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.39 Total: -56.63 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.39 Total: -19.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.54 -9.12 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077953887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.930 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds