Wall clock time and date at job start Fri Apr 10 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47041 * 264.85243 * 3 2 1 5 5 H 1.48499 * 109.47320 * 24.84735 * 3 2 1 6 6 H 1.48497 * 109.47580 * 144.85358 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00529 * 338.28321 * 7 2 1 9 9 N 1.36941 * 119.99831 * 158.27777 * 7 2 1 10 10 C 1.47421 * 125.64786 * 345.69614 * 9 7 2 11 11 C 1.54901 * 104.83540 * 204.16514 * 10 9 7 12 12 H 1.08997 * 111.00431 * 81.06601 * 11 10 9 13 13 O 1.42904 * 111.00837 * 204.92039 * 11 10 9 14 14 C 1.55164 * 101.58236 * 322.99398 * 11 10 9 15 15 H 1.08997 * 110.87140 * 277.06631 * 14 11 10 16 16 N 1.46494 * 110.72013 * 153.86694 * 14 11 10 17 17 C 1.34772 * 120.00047 * 160.02825 * 16 14 11 18 18 O 1.21606 * 120.00177 * 359.97438 * 17 16 14 19 19 C 1.47456 * 120.00104 * 179.97438 * 17 16 14 20 20 C 1.38848 * 120.46252 * 0.02562 * 19 17 16 21 21 C 1.38900 * 120.67720 * 180.02562 * 20 19 17 22 22 C 1.36366 * 121.27471 * 359.97438 * 21 20 19 23 23 C 1.40395 * 119.98570 * 359.97438 * 22 21 20 24 24 C 1.40470 * 121.96313 * 179.97438 * 23 22 21 25 25 N 1.31274 * 119.88662 * 180.02562 * 24 23 22 26 26 C 1.32552 * 122.73525 * 0.02562 * 25 24 23 27 27 C 1.36332 * 121.81905 * 0.02562 * 26 25 24 28 28 C 1.40295 * 118.69855 * 359.97438 * 27 26 25 29 29 C 1.47022 * 125.65109 * 165.74251 * 9 7 2 30 30 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36919 * 323.00714 * 10 9 7 32 32 H 1.09006 * 110.36490 * 85.21595 * 10 9 7 33 33 H 0.96701 * 113.99966 * 292.19524 * 13 11 10 34 34 H 0.97004 * 120.00088 * 340.01530 * 16 14 11 35 35 H 1.08006 * 119.66389 * 0.02669 * 20 19 17 36 36 H 1.08000 * 119.36052 * 179.70216 * 21 20 19 37 37 H 1.08001 * 120.00755 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.05394 * 0.03051 * 24 23 22 39 39 H 1.07996 * 119.09173 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.64984 * 180.02562 * 27 26 25 41 41 H 1.08995 * 109.87992 * 59.48462 * 29 9 7 42 42 H 1.09000 * 110.00803 * 298.39932 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6064 1.9835 -1.3944 5 1 1.3975 2.6816 0.5883 6 1 3.4891 1.4741 0.8059 7 6 2.0102 -1.2022 0.0005 8 1 1.5278 -2.1041 0.3470 9 7 3.3067 -1.2445 -0.4384 10 6 3.9895 -0.1858 -1.2040 11 6 5.1253 -0.9154 -1.9636 12 1 4.7462 -1.3963 -2.8653 13 8 6.1928 -0.0176 -2.2746 14 6 5.5727 -1.9700 -0.9170 15 1 6.2700 -1.5350 -0.2011 16 7 6.1691 -3.1341 -1.5766 17 6 6.9716 -3.9646 -0.8818 18 8 7.2009 -3.7474 0.2925 19 6 7.5714 -5.1368 -1.5456 20 6 7.3165 -5.3937 -2.8860 21 6 7.8788 -6.4968 -3.5156 22 6 8.6945 -7.3571 -2.8416 23 6 8.9805 -7.1354 -1.4851 24 6 9.8145 -7.9948 -0.7509 25 7 10.0541 -7.7490 0.5161 26 6 9.5380 -6.7082 1.1544 27 6 8.7164 -5.8173 0.5301 28 6 8.4145 -6.0149 -0.8257 29 6 4.2479 -2.3536 -0.2250 30 1 -0.4851 0.8401 -0.0004 31 1 3.2992 0.2784 -1.9084 32 1 4.4028 0.5639 -0.5292 33 1 5.9604 0.6595 -2.9247 34 1 5.9863 -3.3074 -2.5134 35 1 6.6744 -4.7291 -3.4450 36 1 7.6623 -6.6792 -4.5578 37 1 9.1204 -8.2087 -3.3513 38 1 10.2579 -8.8563 -1.2281 39 1 9.7749 -6.5620 2.1979 40 1 8.3065 -4.9755 1.0684 41 1 3.8501 -3.2674 -0.6663 42 1 4.4158 -2.5001 0.8420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078177702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:04 Heat of formation + Delta-G solvation = 18.037357 kcal Electronic energy + Delta-G solvation = -27130.984940 eV Core-core repulsion = 23270.392373 eV Total energy + Delta-G solvation = -3860.592567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30441 -39.78250 -38.28019 -37.38409 -35.47576 -34.45106 -33.12856 -32.10623 -31.40628 -30.21768 -28.76121 -27.75075 -25.08933 -24.41015 -23.68982 -23.27036 -21.44179 -20.86154 -20.24527 -18.40421 -18.14763 -17.38609 -17.13381 -16.70321 -16.39365 -16.08208 -15.39890 -15.19192 -15.08612 -14.60921 -14.40241 -14.13648 -13.88871 -13.84609 -13.44781 -13.21938 -13.00238 -12.84554 -12.42547 -12.32983 -12.26828 -12.05025 -11.88538 -11.45432 -11.41714 -10.94786 -10.53698 -10.40373 -10.13981 -10.07418 -9.77592 -9.49796 -9.44554 -9.38869 -9.13776 -8.79771 -8.35403 -7.20143 -6.01585 -3.33137 -0.16964 0.58857 1.43530 2.44992 2.95017 3.11950 3.23499 3.42954 3.44009 3.86661 4.10158 4.19813 4.24890 4.30519 4.41048 4.45437 4.59353 4.64834 4.77317 4.79810 5.04107 5.11106 5.18647 5.22584 5.25896 5.36010 5.39561 5.58566 5.67262 5.69020 5.73685 5.77507 5.88043 6.08059 6.18796 6.27005 6.36298 6.40173 6.50670 6.55277 6.66872 7.39043 7.51235 7.70340 7.75123 8.11971 8.21988 8.72221 9.58658 10.01514 11.13997 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.002854 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.768032 B = 9807.459722 C =10109.665040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.097 0.903 9 N -0.604 5.604 10 C 0.079 3.921 11 C 0.083 3.917 12 H 0.073 0.927 13 O -0.561 6.561 14 C 0.142 3.858 15 H 0.107 0.893 16 N -0.707 5.707 17 C 0.562 3.438 18 O -0.528 6.528 19 C -0.123 4.123 20 C -0.056 4.056 21 C -0.130 4.130 22 C -0.060 4.060 23 C -0.121 4.121 24 C 0.138 3.862 25 N -0.487 5.487 26 C 0.072 3.928 27 C -0.152 4.152 28 C 0.011 3.989 29 C 0.130 3.870 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.379 0.621 34 H 0.399 0.601 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.041 0.959 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.738 -12.828 -10.199 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.115 0.885 9 N -0.332 5.332 10 C -0.047 4.047 11 C 0.023 3.977 12 H 0.091 0.909 13 O -0.366 6.366 14 C 0.038 3.962 15 H 0.125 0.875 16 N -0.357 5.357 17 C 0.350 3.650 18 O -0.406 6.406 19 C -0.126 4.126 20 C -0.077 4.077 21 C -0.148 4.148 22 C -0.080 4.080 23 C -0.123 4.123 24 C -0.033 4.033 25 N -0.195 5.195 26 C -0.071 4.071 27 C -0.171 4.171 28 C 0.005 3.995 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.059 0.941 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.481 -13.404 -8.254 25.047 hybrid contribution -0.658 1.853 -1.364 2.393 sum 18.824 -11.551 -9.618 24.088 Atomic orbital electron populations 1.69824 1.05442 1.26664 1.53179 1.24918 0.95198 0.97390 1.00304 0.87036 0.79213 0.84668 0.77556 1.21444 1.22909 1.19949 1.18673 0.83385 0.95874 1.39054 0.88519 1.44596 1.09949 1.16022 1.62682 1.22682 0.93593 0.93263 0.95151 1.23266 0.87355 0.90492 0.96629 0.90876 1.86475 1.38103 1.46370 1.65625 1.22047 0.95907 0.83725 0.94551 0.87542 1.45849 1.48703 1.26925 1.14269 1.17989 0.78493 0.82182 0.86341 1.90607 1.60958 1.73371 1.15691 1.19880 1.01275 0.96962 0.94470 1.21525 0.96447 0.96512 0.93177 1.20840 0.98282 0.94900 1.00817 1.21182 0.95727 0.98595 0.92505 1.19030 1.00815 0.96953 0.95492 1.23167 0.93291 0.97165 0.89723 1.67399 1.22306 1.19678 1.10114 1.22376 0.94266 0.90082 1.00371 1.23025 0.97697 1.01997 0.94335 1.17937 0.94476 0.92969 0.94071 1.21689 0.87101 0.92317 0.98509 0.92583 0.91434 0.93939 0.77344 0.76571 0.84948 0.84728 0.84486 0.81961 0.82769 0.80498 0.94118 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.97 55.49 0.78 -26.75 16 2 C 0.02 0.58 5.45 -17.43 -0.09 0.49 16 3 Si 0.88 22.11 24.23 -169.99 -4.12 17.99 16 4 H -0.29 -6.72 6.37 56.52 0.36 -6.35 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.84 6.38 56.52 0.36 -6.48 16 7 C -0.24 -6.78 10.60 -15.06 -0.16 -6.94 16 8 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 9 N -0.60 -14.25 3.26 -170.08 -0.55 -14.81 16 10 C 0.08 1.64 4.41 -2.54 -0.01 1.63 16 11 C 0.08 1.31 4.04 -24.58 -0.10 1.21 16 12 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 13 O -0.56 -7.99 13.47 -35.23 -0.47 -8.47 16 14 C 0.14 2.37 2.97 -66.10 -0.20 2.17 16 15 H 0.11 1.96 7.69 -51.93 -0.40 1.57 16 16 N -0.71 -9.41 5.08 -53.10 -0.27 -9.68 16 17 C 0.56 8.09 7.75 -12.51 -0.10 8.00 16 18 O -0.53 -9.16 13.19 5.27 0.07 -9.09 16 19 C -0.12 -1.46 5.90 -104.70 -0.62 -2.08 16 20 C -0.06 -0.48 9.53 -39.11 -0.37 -0.86 16 21 C -0.13 -0.89 9.92 -40.01 -0.40 -1.29 16 22 C -0.06 -0.42 9.79 -39.44 -0.39 -0.81 16 23 C -0.12 -1.21 5.74 -106.88 -0.61 -1.82 16 24 C 0.14 1.31 11.05 -16.95 -0.19 1.13 16 25 N -0.49 -5.71 10.30 -13.11 -0.14 -5.85 16 26 C 0.07 0.85 11.07 -17.93 -0.20 0.65 16 27 C -0.15 -1.98 9.28 -39.49 -0.37 -2.35 16 28 C 0.01 0.14 5.77 -106.55 -0.61 -0.47 16 29 C 0.13 2.60 6.99 -3.07 -0.02 2.58 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.07 1.45 6.07 -51.93 -0.32 1.13 16 32 H 0.04 0.95 5.59 -51.93 -0.29 0.66 16 33 H 0.38 3.76 9.12 45.56 0.42 4.17 16 34 H 0.40 4.05 6.56 -40.82 -0.27 3.78 16 35 H 0.13 0.82 6.39 -52.48 -0.34 0.49 16 36 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.18 2.56 5.03 -52.49 -0.26 2.30 16 41 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -35.29 342.83 -8.02 -43.31 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.04 Total: 6.94 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -4.43 Total: 1.24 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.18 Total: -57.09 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.41 Total: -17.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.12 Total: 17.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.29 -8.02 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078177702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.348 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds