Wall clock time and date at job start Fri Apr 10 2020 14:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47041 * 264.85243 * 3 2 1 5 5 H 1.48499 * 109.47320 * 24.84735 * 3 2 1 6 6 H 1.48497 * 109.47580 * 144.85358 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00529 * 338.28321 * 7 2 1 9 9 N 1.36941 * 119.99831 * 158.27777 * 7 2 1 10 10 C 1.47421 * 125.64786 * 345.69614 * 9 7 2 11 11 C 1.54901 * 104.83540 * 204.16514 * 10 9 7 12 12 H 1.08997 * 111.00431 * 81.06601 * 11 10 9 13 13 O 1.42904 * 111.00837 * 204.92039 * 11 10 9 14 14 C 1.55164 * 101.58236 * 322.99398 * 11 10 9 15 15 H 1.08997 * 110.87140 * 277.06631 * 14 11 10 16 16 N 1.46494 * 110.72013 * 153.86694 * 14 11 10 17 17 C 1.34772 * 120.00047 * 160.02825 * 16 14 11 18 18 O 1.21606 * 120.00177 * 359.97438 * 17 16 14 19 19 C 1.47456 * 120.00104 * 179.97438 * 17 16 14 20 20 C 1.38848 * 120.46252 * 0.02562 * 19 17 16 21 21 C 1.38900 * 120.67720 * 180.02562 * 20 19 17 22 22 C 1.36366 * 121.27471 * 359.97438 * 21 20 19 23 23 C 1.40395 * 119.98570 * 359.97438 * 22 21 20 24 24 C 1.40470 * 121.96313 * 179.97438 * 23 22 21 25 25 N 1.31274 * 119.88662 * 180.02562 * 24 23 22 26 26 C 1.32552 * 122.73525 * 0.02562 * 25 24 23 27 27 C 1.36332 * 121.81905 * 0.02562 * 26 25 24 28 28 C 1.40295 * 118.69855 * 359.97438 * 27 26 25 29 29 C 1.47022 * 125.65109 * 165.74251 * 9 7 2 30 30 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36919 * 323.00714 * 10 9 7 32 32 H 1.09006 * 110.36490 * 85.21595 * 10 9 7 33 33 H 0.96701 * 113.99966 * 292.19524 * 13 11 10 34 34 H 0.97004 * 120.00088 * 340.01530 * 16 14 11 35 35 H 1.08006 * 119.66389 * 0.02669 * 20 19 17 36 36 H 1.08000 * 119.36052 * 179.70216 * 21 20 19 37 37 H 1.08001 * 120.00755 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.05394 * 0.03051 * 24 23 22 39 39 H 1.07996 * 119.09173 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.64984 * 180.02562 * 27 26 25 41 41 H 1.08995 * 109.87992 * 59.48462 * 29 9 7 42 42 H 1.09000 * 110.00803 * 298.39932 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6064 1.9835 -1.3944 5 1 1.3975 2.6816 0.5883 6 1 3.4891 1.4741 0.8059 7 6 2.0102 -1.2022 0.0005 8 1 1.5278 -2.1041 0.3470 9 7 3.3067 -1.2445 -0.4384 10 6 3.9895 -0.1858 -1.2040 11 6 5.1253 -0.9154 -1.9636 12 1 4.7462 -1.3963 -2.8653 13 8 6.1928 -0.0176 -2.2746 14 6 5.5727 -1.9700 -0.9170 15 1 6.2700 -1.5350 -0.2011 16 7 6.1691 -3.1341 -1.5766 17 6 6.9716 -3.9646 -0.8818 18 8 7.2009 -3.7474 0.2925 19 6 7.5714 -5.1368 -1.5456 20 6 7.3165 -5.3937 -2.8860 21 6 7.8788 -6.4968 -3.5156 22 6 8.6945 -7.3571 -2.8416 23 6 8.9805 -7.1354 -1.4851 24 6 9.8145 -7.9948 -0.7509 25 7 10.0541 -7.7490 0.5161 26 6 9.5380 -6.7082 1.1544 27 6 8.7164 -5.8173 0.5301 28 6 8.4145 -6.0149 -0.8257 29 6 4.2479 -2.3536 -0.2250 30 1 -0.4851 0.8401 -0.0004 31 1 3.2992 0.2784 -1.9084 32 1 4.4028 0.5639 -0.5292 33 1 5.9604 0.6595 -2.9247 34 1 5.9863 -3.3074 -2.5134 35 1 6.6744 -4.7291 -3.4450 36 1 7.6623 -6.6792 -4.5578 37 1 9.1204 -8.2087 -3.3513 38 1 10.2579 -8.8563 -1.2281 39 1 9.7749 -6.5620 2.1979 40 1 8.3065 -4.9755 1.0684 41 1 3.8501 -3.2674 -0.6663 42 1 4.4158 -2.5001 0.8420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078177702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:03 Heat of formation + Delta-G solvation = -10.851416 kcal Electronic energy + Delta-G solvation = -27132.237651 eV Core-core repulsion = 23270.392373 eV Total energy + Delta-G solvation = -3861.845278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13194 -40.92784 -39.58820 -38.14335 -36.86507 -35.80212 -34.09886 -33.84019 -32.26474 -31.20574 -30.19897 -29.27959 -26.45231 -25.49794 -24.48119 -24.25287 -23.04801 -21.98661 -21.64806 -19.38684 -19.13395 -18.71865 -18.57989 -17.76428 -17.40410 -17.24000 -16.62412 -16.35281 -16.16273 -15.85949 -15.51223 -15.45563 -15.09290 -14.83679 -14.79935 -14.64979 -14.29137 -13.99905 -13.67737 -13.53727 -13.31367 -13.14062 -12.96493 -12.90684 -12.73177 -12.69579 -12.33162 -11.66809 -11.64596 -11.25259 -11.18379 -11.00407 -10.84142 -10.37124 -10.30816 -10.13313 -9.20811 -9.12006 -8.22194 -5.51078 -0.89411 -0.13426 0.60745 1.23271 1.38628 1.45309 1.67916 1.85478 2.21664 2.34999 2.76538 3.06265 3.08690 3.31249 3.40357 3.50297 3.59376 3.64904 3.77265 3.81452 3.90147 3.91935 3.94997 4.20098 4.21296 4.37656 4.39790 4.54898 4.63411 4.71656 4.75219 4.80447 4.87631 4.89413 4.95580 5.09294 5.26216 5.33278 5.36593 5.53166 5.67679 5.78403 6.03108 6.38093 6.63199 6.77923 6.95686 7.09176 7.43980 7.94966 8.96922 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.002854 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.768032 B = 9807.459722 C =10109.665040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.034 4.034 3 Si 0.948 3.052 4 H -0.255 1.255 5 H -0.308 1.308 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.620 5.620 10 C 0.070 3.930 11 C 0.109 3.891 12 H 0.108 0.892 13 O -0.563 6.563 14 C 0.155 3.845 15 H 0.085 0.915 16 N -0.694 5.694 17 C 0.558 3.442 18 O -0.570 6.570 19 C -0.162 4.162 20 C -0.035 4.035 21 C -0.132 4.132 22 C -0.039 4.039 23 C -0.137 4.137 24 C 0.151 3.849 25 N -0.515 5.515 26 C 0.068 3.932 27 C -0.186 4.186 28 C -0.007 4.007 29 C 0.131 3.869 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.402 0.598 34 H 0.417 0.583 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.206 0.794 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.046 0.954 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.034 -14.065 -14.576 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.229 4.229 3 Si 0.776 3.224 4 H -0.180 1.180 5 H -0.237 1.237 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.081 0.919 9 N -0.348 5.348 10 C -0.055 4.055 11 C 0.048 3.952 12 H 0.126 0.874 13 O -0.371 6.371 14 C 0.049 3.951 15 H 0.103 0.897 16 N -0.346 5.346 17 C 0.348 3.652 18 O -0.451 6.451 19 C -0.165 4.165 20 C -0.055 4.055 21 C -0.149 4.149 22 C -0.059 4.059 23 C -0.139 4.139 24 C -0.021 4.021 25 N -0.224 5.224 26 C -0.074 4.074 27 C -0.205 4.205 28 C -0.013 4.013 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.253 0.747 34 H 0.256 0.744 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.199 0.801 38 H 0.222 0.778 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.064 0.936 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 21.818 -14.639 -12.696 29.180 hybrid contribution -1.334 2.061 -0.066 2.456 sum 20.484 -12.577 -12.761 27.215 Atomic orbital electron populations 1.69944 1.07075 1.27458 1.55486 1.25549 0.95846 1.00660 1.00850 0.86009 0.77282 0.80034 0.79065 1.18012 1.23694 1.20400 1.18588 0.85250 0.94827 1.38167 0.91943 1.44624 1.09231 1.17746 1.63182 1.22824 0.94942 0.92802 0.94969 1.22947 0.85815 0.89655 0.96754 0.87427 1.86456 1.37023 1.46966 1.66617 1.21579 0.93482 0.85241 0.94778 0.89702 1.45585 1.48267 1.25818 1.14938 1.18538 0.77989 0.82724 0.85972 1.90606 1.62350 1.74444 1.17686 1.19684 1.03804 0.96931 0.96121 1.21956 0.95034 0.96950 0.91551 1.21335 0.97331 0.93645 1.02609 1.21728 0.94044 0.99269 0.90812 1.19330 1.01181 0.96296 0.97137 1.23926 0.91710 0.97506 0.88931 1.67474 1.23509 1.19821 1.11551 1.22491 0.93895 0.90078 1.00890 1.22840 0.99741 1.02333 0.95577 1.18196 0.95001 0.94235 0.93879 1.21731 0.88457 0.91628 0.97746 0.92617 0.91653 0.95172 0.74697 0.74395 0.82389 0.80594 0.80067 0.77780 0.82087 0.83104 0.93577 0.96156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.97 21.65 0.30 -59.22 16 2 C -0.03 -2.01 5.45 84.86 0.46 -1.54 16 3 Si 0.95 46.14 24.23 68.60 1.66 47.81 16 4 H -0.25 -10.99 6.37 99.48 0.63 -10.36 16 5 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 6 H -0.28 -13.59 6.38 99.48 0.63 -12.95 16 7 C -0.24 -13.85 10.60 84.03 0.89 -12.96 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.62 -29.60 3.26 -692.03 -2.26 -31.85 16 10 C 0.07 2.80 4.41 86.85 0.38 3.18 16 11 C 0.11 3.15 4.04 31.99 0.13 3.28 16 12 H 0.11 2.46 8.00 -2.39 -0.02 2.44 16 13 O -0.56 -14.07 13.47 -148.98 -2.01 -16.07 16 14 C 0.16 5.10 2.97 46.18 0.14 5.24 16 15 H 0.08 3.20 7.69 -2.39 -0.02 3.18 16 16 N -0.69 -17.68 5.08 -440.16 -2.24 -19.91 16 17 C 0.56 16.35 7.75 86.67 0.67 17.03 16 18 O -0.57 -21.34 13.19 -4.05 -0.05 -21.39 16 19 C -0.16 -3.73 5.90 -19.92 -0.12 -3.85 16 20 C -0.04 -0.47 9.53 22.57 0.22 -0.26 16 21 C -0.13 -1.06 9.92 21.99 0.22 -0.84 16 22 C -0.04 -0.34 9.79 22.36 0.22 -0.12 16 23 C -0.14 -2.39 5.74 -21.33 -0.12 -2.51 16 24 C 0.15 2.48 11.05 85.32 0.94 3.42 16 25 N -0.52 -11.83 10.30 -195.40 -2.01 -13.85 16 26 C 0.07 1.72 11.07 84.14 0.93 2.65 16 27 C -0.19 -5.27 9.28 22.33 0.21 -5.06 16 28 C -0.01 -0.18 5.77 -21.11 -0.12 -0.30 16 29 C 0.13 5.35 6.99 86.73 0.61 5.95 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.07 2.64 6.07 -2.39 -0.01 2.62 16 32 H 0.03 1.30 5.59 -2.38 -0.01 1.29 16 33 H 0.40 6.19 9.12 -74.06 -0.68 5.51 16 34 H 0.42 7.19 6.56 -92.71 -0.61 6.58 16 35 H 0.16 1.19 6.39 -2.91 -0.02 1.17 16 36 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 37 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 38 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.15 5.01 5.03 -2.91 -0.01 5.00 16 41 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -83.66 342.83 -1.28 -84.95 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.33 Total: 16.23 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.65 Total: 13.31 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.20 Total: -124.83 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -2.06 Total: -37.46 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.66 Total: 47.81 kcal Total: -83.66 -1.28 -84.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078177702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.094 kcal (2) G-P(sol) polarization free energy of solvation -83.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds