Wall clock time and date at job start Fri Apr 10 2020 14:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 O 1.42898 * 110.87178 * 219.38109 * 11 10 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 15 15 H 1.09008 * 111.03635 * 277.41090 * 14 11 10 16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10 17 17 C 1.34776 * 120.00084 * 161.35426 * 16 14 11 18 18 O 1.21601 * 120.00180 * 359.97438 * 17 16 14 19 19 C 1.47439 * 120.00145 * 180.02562 * 17 16 14 20 20 C 1.38955 * 121.17417 * 359.70788 * 19 17 16 21 21 N 1.32193 * 121.32051 * 179.74934 * 20 19 17 22 22 C 1.31197 * 123.69614 * 0.56414 * 21 20 19 23 23 C 1.40389 * 120.91477 * 359.71371 * 22 21 20 24 24 C 1.40396 * 122.14489 * 179.97438 * 23 22 21 25 25 C 1.36230 * 119.48686 * 180.02562 * 24 23 22 26 26 C 1.39291 * 121.10069 * 0.02562 * 25 24 23 27 27 C 1.36437 * 120.95091 * 359.97438 * 26 25 24 28 28 C 1.39682 * 119.43823 * 0.02562 * 27 26 25 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 33 33 H 0.96700 * 114.00884 * 293.61196 * 13 11 10 34 34 H 0.97000 * 120.00071 * 341.34892 * 16 14 11 35 35 H 1.08001 * 119.33721 * 0.02876 * 20 19 17 36 36 H 1.07999 * 119.54149 * 179.69801 * 22 21 20 37 37 H 1.08006 * 120.25462 * 0.02562 * 24 23 22 38 38 H 1.07989 * 119.44700 * 179.97438 * 25 24 23 39 39 H 1.08003 * 119.52207 * 180.02562 * 26 25 24 40 40 H 1.08003 * 120.27822 * 179.97438 * 27 26 25 41 41 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 42 42 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 1 -0.6304 -4.4236 0.9788 13 8 -1.5623 -4.3257 -0.8786 14 6 0.8538 -4.6579 -0.6131 15 1 0.8592 -4.5979 -1.7015 16 7 1.0335 -6.0411 -0.1654 17 6 1.8677 -6.8626 -0.8331 18 8 2.4708 -6.4557 -1.8075 19 6 2.0482 -8.2549 -0.3828 20 6 1.3752 -8.7438 0.7302 21 7 1.5311 -9.9930 1.1336 22 6 2.3222 -10.8558 0.5412 23 6 3.0662 -10.4920 -0.5924 24 6 3.9208 -11.3940 -1.2461 25 6 4.6180 -10.9829 -2.3419 26 6 4.4978 -9.6820 -2.8249 27 6 3.6766 -8.7798 -2.2141 28 6 2.9471 -9.1681 -1.0880 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5575 -2.0898 0.9015 33 1 -2.4008 -3.9664 -0.5579 34 1 0.5523 -6.3658 0.6117 35 1 0.7079 -8.0915 1.2740 36 1 2.4024 -11.8597 0.9311 37 1 4.0247 -12.4058 -0.8830 38 1 5.2755 -11.6771 -2.8440 39 1 5.0622 -9.3834 -3.6960 40 1 3.5919 -7.7737 -2.5976 41 1 2.1668 -4.0420 1.0178 42 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078225708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:01 Heat of formation + Delta-G solvation = 10.091691 kcal Electronic energy + Delta-G solvation = -26988.556851 eV Core-core repulsion = 23127.619734 eV Total energy + Delta-G solvation = -3860.937117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08429 -39.47926 -37.82460 -37.59045 -35.11027 -34.20948 -32.98879 -31.76349 -31.41131 -30.02136 -28.34555 -27.08294 -25.24873 -24.27278 -23.72861 -22.88026 -21.04846 -20.49060 -20.25034 -18.30573 -17.77108 -17.62231 -17.01165 -16.72825 -16.07885 -15.71289 -15.11829 -15.08461 -14.88997 -14.42524 -14.21533 -13.99905 -13.92980 -13.66409 -13.10553 -13.00599 -12.70429 -12.52051 -12.41483 -12.15350 -12.09907 -11.64529 -11.55287 -11.28186 -10.91430 -10.83091 -10.28271 -10.20638 -10.13300 -9.94067 -9.86156 -9.55707 -9.34484 -9.30973 -8.96216 -8.67373 -8.34184 -6.93846 -5.78347 -3.12773 -0.17321 0.63448 1.45505 2.63928 3.09288 3.11297 3.38594 3.43637 3.45250 3.86689 3.97682 4.26021 4.38786 4.43790 4.44789 4.57752 4.61172 4.78568 4.92185 4.99710 5.12591 5.23052 5.36763 5.41213 5.50700 5.53482 5.61612 5.70762 5.75510 5.86084 6.02912 6.07665 6.11822 6.25476 6.30586 6.45937 6.58120 6.64807 6.82382 7.28888 7.43198 7.54110 7.60790 7.70987 8.07345 8.14239 8.25431 9.12633 9.72894 10.35889 11.33734 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002767 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.432054 B =10118.554127 C =10864.125290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.105 0.895 16 N -0.706 5.706 17 C 0.566 3.434 18 O -0.529 6.529 19 C -0.166 4.166 20 C 0.119 3.881 21 N -0.496 5.496 22 C 0.172 3.828 23 C -0.121 4.121 24 C -0.092 4.092 25 C -0.118 4.118 26 C -0.099 4.099 27 C -0.108 4.108 28 C 0.011 3.989 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.377 0.623 34 H 0.396 0.604 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.167 0.833 41 H 0.024 0.976 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -23.570 0.031 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.123 0.877 16 N -0.356 5.356 17 C 0.353 3.647 18 O -0.407 6.407 19 C -0.171 4.171 20 C -0.026 4.026 21 N -0.204 5.204 22 C 0.001 3.999 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.136 4.136 26 C -0.118 4.118 27 C -0.125 4.125 28 C 0.006 3.994 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.184 0.816 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.571 -23.419 -0.270 23.692 hybrid contribution 0.186 1.268 0.082 1.284 sum 3.757 -22.152 -0.188 22.469 Atomic orbital electron populations 1.69913 1.04938 1.25255 1.57057 1.24815 0.95786 0.97789 1.01966 0.86062 0.78571 0.83131 0.77668 1.21468 1.21627 1.20606 1.19088 0.90553 0.82020 1.43975 0.90109 1.44301 1.01144 0.99853 1.87455 1.21867 0.85431 0.87662 1.02256 1.23446 0.85444 0.98603 0.91652 0.92379 1.86464 1.18701 1.79945 1.51696 1.22316 0.94774 0.78476 1.00982 0.87684 1.45854 1.45311 1.12469 1.31982 1.17765 0.79616 0.84230 0.83117 1.90652 1.47001 1.76353 1.26708 1.21974 1.01338 0.94902 0.98895 1.22757 0.95655 0.91817 0.92324 1.67102 1.18314 1.03292 1.31656 1.23278 0.88516 0.98658 0.89473 1.19014 1.00669 0.94212 0.98452 1.20941 0.95652 0.98930 0.95647 1.21000 0.99508 0.96449 0.96657 1.21207 0.97731 0.93220 0.99690 1.21870 0.94276 1.02545 0.93847 1.18926 0.94297 0.91573 0.94598 1.21843 0.94862 0.85690 0.97330 0.93624 0.92011 0.93190 0.77550 0.76840 0.82465 0.81720 0.84798 0.85526 0.85301 0.81560 0.95845 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.34 55.49 0.57 -26.08 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.26 3.40 -169.85 -0.58 -15.84 16 10 C 0.15 3.59 5.16 -2.92 -0.02 3.57 16 11 C 0.07 1.24 3.95 -24.90 -0.10 1.14 16 12 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 13 O -0.56 -9.50 13.40 -35.23 -0.47 -9.97 16 14 C 0.14 2.59 3.04 -65.78 -0.20 2.39 16 15 H 0.11 2.23 7.73 -51.92 -0.40 1.83 16 16 N -0.71 -10.52 5.19 -52.80 -0.27 -10.79 16 17 C 0.57 8.92 7.77 -12.51 -0.10 8.82 16 18 O -0.53 -9.88 13.48 5.28 0.07 -9.80 16 19 C -0.17 -2.22 6.07 -102.66 -0.62 -2.85 16 20 C 0.12 1.37 10.71 -17.13 -0.18 1.18 16 21 N -0.50 -5.57 10.22 -12.58 -0.13 -5.70 16 22 C 0.17 1.60 11.00 -17.01 -0.19 1.41 16 23 C -0.12 -1.25 5.74 -106.89 -0.61 -1.86 16 24 C -0.09 -0.72 9.82 -39.49 -0.39 -1.10 16 25 C -0.12 -0.93 9.94 -39.91 -0.40 -1.33 16 26 C -0.10 -0.97 9.96 -39.84 -0.40 -1.36 16 27 C -0.11 -1.38 9.32 -39.69 -0.37 -1.75 16 28 C 0.01 0.15 5.90 -104.75 -0.62 -0.47 16 29 C 0.13 2.77 6.92 -2.53 -0.02 2.75 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.06 1.63 7.31 -51.93 -0.38 1.25 16 32 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 33 H 0.38 4.79 9.12 45.56 0.42 5.21 16 34 H 0.40 4.68 6.62 -40.82 -0.27 4.41 16 35 H 0.16 1.43 6.44 -52.49 -0.34 1.10 16 36 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.17 2.45 5.24 -52.48 -0.28 2.17 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -34.25 350.59 -9.14 -43.39 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.14 Total: 8.77 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -4.46 Total: 3.72 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.41 Total: -58.41 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.40 Total: -19.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.25 -9.14 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078225708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.485 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds