Wall clock time and date at job start Fri Apr 10 2020 14:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 O 1.42898 * 110.87178 * 219.38109 * 11 10 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 15 15 H 1.09008 * 111.03635 * 277.41090 * 14 11 10 16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10 17 17 C 1.34776 * 120.00084 * 161.35426 * 16 14 11 18 18 O 1.21601 * 120.00180 * 359.97438 * 17 16 14 19 19 C 1.47439 * 120.00145 * 180.02562 * 17 16 14 20 20 C 1.38955 * 121.17417 * 359.70788 * 19 17 16 21 21 N 1.32193 * 121.32051 * 179.74934 * 20 19 17 22 22 C 1.31197 * 123.69614 * 0.56414 * 21 20 19 23 23 C 1.40389 * 120.91477 * 359.71371 * 22 21 20 24 24 C 1.40396 * 122.14489 * 179.97438 * 23 22 21 25 25 C 1.36230 * 119.48686 * 180.02562 * 24 23 22 26 26 C 1.39291 * 121.10069 * 0.02562 * 25 24 23 27 27 C 1.36437 * 120.95091 * 359.97438 * 26 25 24 28 28 C 1.39682 * 119.43823 * 0.02562 * 27 26 25 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 33 33 H 0.96700 * 114.00884 * 293.61196 * 13 11 10 34 34 H 0.97000 * 120.00071 * 341.34892 * 16 14 11 35 35 H 1.08001 * 119.33721 * 0.02876 * 20 19 17 36 36 H 1.07999 * 119.54149 * 179.69801 * 22 21 20 37 37 H 1.08006 * 120.25462 * 0.02562 * 24 23 22 38 38 H 1.07989 * 119.44700 * 179.97438 * 25 24 23 39 39 H 1.08003 * 119.52207 * 180.02562 * 26 25 24 40 40 H 1.08003 * 120.27822 * 179.97438 * 27 26 25 41 41 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 42 42 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 1 -0.6304 -4.4236 0.9788 13 8 -1.5623 -4.3257 -0.8786 14 6 0.8538 -4.6579 -0.6131 15 1 0.8592 -4.5979 -1.7015 16 7 1.0335 -6.0411 -0.1654 17 6 1.8677 -6.8626 -0.8331 18 8 2.4708 -6.4557 -1.8075 19 6 2.0482 -8.2549 -0.3828 20 6 1.3752 -8.7438 0.7302 21 7 1.5311 -9.9930 1.1336 22 6 2.3222 -10.8558 0.5412 23 6 3.0662 -10.4920 -0.5924 24 6 3.9208 -11.3940 -1.2461 25 6 4.6180 -10.9829 -2.3419 26 6 4.4978 -9.6820 -2.8249 27 6 3.6766 -8.7798 -2.2141 28 6 2.9471 -9.1681 -1.0880 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5575 -2.0898 0.9015 33 1 -2.4008 -3.9664 -0.5579 34 1 0.5523 -6.3658 0.6117 35 1 0.7079 -8.0915 1.2740 36 1 2.4024 -11.8597 0.9311 37 1 4.0247 -12.4058 -0.8830 38 1 5.2755 -11.6771 -2.8440 39 1 5.0622 -9.3834 -3.6960 40 1 3.5919 -7.7737 -2.5976 41 1 2.1668 -4.0420 1.0178 42 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078225708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:01 Heat of formation + Delta-G solvation = -16.165338 kcal Electronic energy + Delta-G solvation = -26989.695441 eV Core-core repulsion = 23127.619734 eV Total energy + Delta-G solvation = -3862.075707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97262 -40.73461 -39.32778 -38.35219 -36.70750 -35.70499 -34.02357 -33.47082 -32.17302 -31.04170 -29.99602 -28.74403 -26.65859 -25.67401 -24.50941 -23.78544 -22.54936 -21.98220 -21.74712 -19.30437 -19.08273 -18.56734 -18.39081 -18.15910 -17.36189 -16.83096 -16.53004 -16.25234 -16.00737 -15.78188 -15.68778 -15.07290 -14.98975 -14.73515 -14.50916 -14.31633 -14.22532 -13.80616 -13.66713 -13.21216 -13.18780 -13.16924 -12.91631 -12.79162 -12.75483 -12.42379 -12.10907 -11.90388 -11.58244 -11.19427 -11.11696 -10.94859 -10.79936 -10.43199 -10.31541 -10.08714 -9.15019 -8.99843 -7.91345 -5.28619 -0.98060 -0.13424 0.65437 1.44281 1.46641 1.55061 1.71205 1.86092 2.17714 2.45571 3.05407 3.07164 3.21030 3.29971 3.47242 3.50738 3.59581 3.70061 3.82059 3.87584 3.97731 4.00795 4.14667 4.27188 4.32019 4.39385 4.49111 4.52087 4.62085 4.76664 4.78220 4.90321 5.03445 5.13821 5.32543 5.35967 5.40691 5.41328 5.51611 5.57262 5.63238 5.90452 6.10396 6.37485 6.81149 6.84309 7.01625 7.07845 7.65778 8.28716 9.18700 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002767 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.432054 B =10118.554127 C =10864.125290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.097 0.903 13 O -0.568 6.568 14 C 0.156 3.844 15 H 0.073 0.927 16 N -0.694 5.694 17 C 0.565 3.435 18 O -0.569 6.569 19 C -0.202 4.202 20 C 0.134 3.866 21 N -0.518 5.518 22 C 0.194 3.806 23 C -0.138 4.138 24 C -0.071 4.071 25 C -0.125 4.125 26 C -0.089 4.089 27 C -0.153 4.153 28 C -0.009 4.009 29 C 0.132 3.868 30 H 0.250 0.750 31 H 0.022 0.978 32 H 0.029 0.971 33 H 0.398 0.602 34 H 0.414 0.586 35 H 0.177 0.823 36 H 0.212 0.788 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.040 0.960 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 -27.320 1.340 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.349 5.349 10 C 0.035 3.965 11 C 0.032 3.968 12 H 0.115 0.885 13 O -0.376 6.376 14 C 0.049 3.951 15 H 0.091 0.909 16 N -0.346 5.346 17 C 0.354 3.646 18 O -0.449 6.449 19 C -0.207 4.207 20 C -0.010 4.010 21 N -0.226 5.226 22 C 0.023 3.977 23 C -0.140 4.140 24 C -0.091 4.091 25 C -0.142 4.142 26 C -0.108 4.108 27 C -0.171 4.171 28 C -0.014 4.014 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.248 0.752 34 H 0.253 0.747 35 H 0.194 0.806 36 H 0.228 0.772 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.058 0.942 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.198 -27.213 1.065 27.555 hybrid contribution 0.060 2.257 -0.379 2.289 sum 4.258 -24.956 0.686 25.326 Atomic orbital electron populations 1.70115 1.06136 1.25624 1.57719 1.25653 0.96759 1.00953 1.02008 0.85045 0.77730 0.78871 0.77465 1.21446 1.21477 1.19388 1.19432 0.90978 0.83449 1.43911 0.90192 1.44568 1.02277 1.00692 1.87410 1.21678 0.84226 0.91240 0.99316 1.23132 0.85594 0.94529 0.93567 0.88526 1.86433 1.19421 1.79740 1.52020 1.21764 0.94237 0.80108 0.98981 0.90872 1.45578 1.45639 1.10741 1.32612 1.18251 0.78661 0.85326 0.82390 1.90648 1.48478 1.77335 1.28483 1.21738 1.04322 0.93597 1.01054 1.23043 0.94493 0.92389 0.91073 1.67256 1.19745 1.03240 1.32365 1.24068 0.85871 0.99860 0.87890 1.19326 1.01920 0.93448 0.99347 1.21488 0.93086 1.00169 0.94332 1.21397 1.00045 0.95815 0.96969 1.21505 0.96060 0.93836 0.99371 1.21673 0.97425 1.02147 0.95808 1.19177 0.94389 0.93030 0.94780 1.21903 0.94943 0.84762 0.97882 0.94056 0.95956 0.95285 0.75205 0.74730 0.80636 0.77174 0.80266 0.81927 0.83934 0.84909 0.94187 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.47 10.34 21.65 0.22 -56.24 16 2 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.25 -14.36 10.28 84.03 0.86 -13.50 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -32.87 3.40 -691.29 -2.35 -35.22 16 10 C 0.16 7.82 5.16 86.68 0.45 8.26 16 11 C 0.09 3.31 3.95 31.78 0.13 3.43 16 12 H 0.10 2.80 8.00 -2.39 -0.02 2.78 16 13 O -0.57 -18.88 13.40 -148.98 -2.00 -20.87 16 14 C 0.16 5.95 3.04 46.38 0.14 6.10 16 15 H 0.07 3.30 7.73 -2.38 -0.02 3.28 16 16 N -0.69 -20.88 5.19 -439.21 -2.28 -23.16 16 17 C 0.56 18.70 7.77 86.67 0.67 19.37 16 18 O -0.57 -23.14 13.48 -4.03 -0.05 -23.19 16 19 C -0.20 -5.48 6.07 -18.59 -0.11 -5.59 16 20 C 0.13 2.90 10.71 84.81 0.91 3.80 16 21 N -0.52 -10.19 10.22 -193.72 -1.98 -12.17 16 22 C 0.19 2.84 11.00 85.31 0.94 3.78 16 23 C -0.14 -2.47 5.74 -21.33 -0.12 -2.59 16 24 C -0.07 -0.79 9.82 22.33 0.22 -0.57 16 25 C -0.12 -1.53 9.94 22.06 0.22 -1.31 16 26 C -0.09 -1.66 9.96 22.10 0.22 -1.44 16 27 C -0.15 -4.11 9.32 22.20 0.21 -3.90 16 28 C -0.01 -0.22 5.90 -19.95 -0.12 -0.34 16 29 C 0.13 5.82 6.92 86.86 0.60 6.42 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 31 H 0.02 1.24 7.31 -2.38 -0.02 1.22 16 32 H 0.03 1.51 7.52 -2.39 -0.02 1.49 16 33 H 0.40 9.65 9.12 -74.06 -0.68 8.98 16 34 H 0.41 9.27 6.62 -92.71 -0.61 8.65 16 35 H 0.18 2.86 6.44 -2.91 -0.02 2.84 16 36 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.16 0.84 8.06 -2.92 -0.02 0.82 16 39 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.13 4.43 5.24 -2.91 -0.02 4.41 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -80.43 350.59 -0.93 -81.36 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.20 Total: 22.31 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.68 Total: 18.91 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -6.39 Total: -126.80 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.05 Total: -44.06 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -80.43 -0.93 -81.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078225708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.195 kcal (2) G-P(sol) polarization free energy of solvation -80.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds