Wall clock time and date at job start Fri Apr 10 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48503 * 109.46910 * 270.00251 * 3 2 1 5 5 H 1.48501 * 109.46998 * 30.00238 * 3 2 1 6 6 H 1.48497 * 109.46936 * 150.00063 * 3 2 1 7 7 C 1.38807 * 119.99330 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65573 * 180.02562 * 9 7 2 11 11 C 1.54906 * 104.83707 * 204.09834 * 10 9 7 12 12 H 1.08998 * 111.00774 * 81.06489 * 11 10 9 13 13 N 1.46505 * 111.00265 * 204.91576 * 11 10 9 14 14 C 1.34776 * 120.00203 * 273.54212 * 13 11 10 15 15 O 1.21547 * 119.99542 * 0.02562 * 14 13 11 16 16 C 1.47903 * 120.00130 * 179.97438 * 14 13 11 17 17 C 1.38890 * 121.11193 * 354.15272 * 16 14 13 18 18 C 1.39266 * 119.58113 * 179.97438 * 17 16 14 19 19 N 1.30996 * 121.88532 * 359.97438 * 18 17 16 20 20 C 1.33537 * 121.82274 * 0.02562 * 19 18 17 21 21 C 1.40718 * 120.96926 * 179.97438 * 20 19 18 22 22 C 1.36063 * 119.73775 * 180.02562 * 21 20 19 23 23 C 1.39350 * 121.05762 * 359.97438 * 22 21 20 24 24 C 1.36240 * 120.83754 * 0.02562 * 23 22 21 25 25 C 1.40111 * 119.64584 * 359.71256 * 24 23 22 26 26 C 1.55396 * 101.66372 * 323.07301 * 11 10 9 27 27 H 1.08999 * 110.85314 * 153.69904 * 26 11 10 28 28 O 1.42903 * 110.70092 * 277.04780 * 26 11 10 29 29 C 1.47024 * 125.64667 * 359.97438 * 9 7 2 30 30 H 0.97004 * 119.99852 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36697 * 322.93990 * 10 9 7 32 32 H 1.09005 * 110.36310 * 85.25435 * 10 9 7 33 33 H 0.97008 * 119.99620 * 93.54748 * 13 11 10 34 34 H 1.08001 * 120.21147 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.06198 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.12942 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.46633 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.57705 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.17831 * 180.02562 * 24 23 22 40 40 H 0.96695 * 113.99948 * 174.82322 * 28 26 11 41 41 H 1.08998 * 109.88214 * 298.39256 * 29 9 7 42 42 H 1.09007 * 109.88202 * 59.39764 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9332 -3.7312 -0.0005 11 6 0.8514 -4.6561 -0.6119 12 1 0.8558 -4.5962 -1.7003 13 7 1.0288 -6.0395 -0.1635 14 6 1.8608 -6.8630 -0.8314 15 8 2.4643 -6.4577 -1.8055 16 6 2.0403 -8.2594 -0.3783 17 6 1.4587 -8.7124 0.7988 18 6 1.6481 -10.0340 1.1950 19 7 2.3633 -10.8728 0.4873 20 6 2.9518 -10.5074 -0.6544 21 6 3.7166 -11.4233 -1.4003 22 6 4.3057 -11.0240 -2.5600 23 6 4.1645 -9.7182 -3.0255 24 6 3.4315 -8.8042 -2.3301 25 6 2.8063 -9.1822 -1.1345 26 6 -0.4521 -4.0433 -0.0285 27 1 -1.3022 -4.2479 -0.6793 28 8 -0.6944 -4.5345 1.2914 29 6 -0.1376 -2.5327 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 2.8325 -3.7407 -0.6164 32 1 2.1666 -4.0419 1.0179 33 1 0.5473 -6.3628 0.6141 34 1 0.8626 -8.0442 1.4026 35 1 1.1917 -10.3774 2.1116 36 1 3.8363 -12.4389 -1.0531 37 1 4.8914 -11.7307 -3.1291 38 1 4.6428 -9.4268 -3.9489 39 1 3.3288 -7.7951 -2.7009 40 1 -1.4515 -4.1239 1.7310 41 1 -0.5538 -2.0846 0.9028 42 1 -0.5586 -2.0495 -0.8812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083616078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:24 Heat of formation + Delta-G solvation = 13.859565 kcal Electronic energy + Delta-G solvation = -27131.391992 eV Core-core repulsion = 23270.618262 eV Total energy + Delta-G solvation = -3860.773730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24828 -39.55095 -37.96168 -37.27424 -34.92033 -34.23944 -33.55557 -31.75362 -30.72973 -30.18763 -28.53589 -27.21640 -25.30561 -24.34448 -23.74318 -22.82716 -21.02586 -20.46220 -20.11158 -18.38973 -17.82686 -17.51877 -17.20174 -16.73602 -15.69016 -15.47194 -15.12108 -14.95375 -14.87309 -14.61251 -14.26665 -14.07985 -14.01339 -13.55133 -13.36983 -13.15293 -12.76917 -12.65802 -12.33147 -11.97895 -11.80549 -11.54653 -11.37829 -11.04235 -10.87266 -10.65676 -10.58188 -10.50306 -10.37016 -10.14080 -9.87157 -9.46829 -9.33256 -9.00639 -8.89754 -8.70727 -8.41845 -6.93464 -5.79984 -3.13118 -0.07898 0.58933 1.56877 2.62767 3.03169 3.06881 3.37333 3.42630 3.44340 3.95678 4.02896 4.30213 4.41221 4.46517 4.53281 4.60177 4.66101 4.90565 5.02387 5.14456 5.19340 5.28648 5.33692 5.42182 5.49044 5.58356 5.62203 5.76996 5.82817 5.90222 5.99164 6.12840 6.12928 6.31850 6.34450 6.51305 6.59086 6.70493 6.83405 7.25153 7.37599 7.56833 7.62877 7.68905 7.97705 8.13971 8.22655 9.12750 9.72710 10.36437 11.32353 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002792 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.536922 B =10024.601816 C =10873.139031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.132 3.868 11 C 0.138 3.862 12 H 0.105 0.895 13 N -0.694 5.694 14 C 0.555 3.445 15 O -0.527 6.527 16 C -0.064 4.064 17 C -0.140 4.140 18 C 0.126 3.874 19 N -0.462 5.462 20 C 0.123 3.877 21 C -0.102 4.102 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.098 4.098 25 C -0.067 4.067 26 C 0.068 3.932 27 H 0.063 0.937 28 O -0.570 6.570 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.408 0.592 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.171 0.829 40 H 0.382 0.618 41 H 0.054 0.946 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -21.178 -0.509 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.033 3.967 12 H 0.123 0.877 13 N -0.345 5.345 14 C 0.341 3.659 15 O -0.405 6.405 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.046 4.046 19 N -0.170 5.170 20 C 0.001 3.999 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.139 4.139 24 C -0.115 4.115 25 C -0.069 4.069 26 C 0.008 3.992 27 H 0.081 0.919 28 O -0.376 6.376 29 C 0.028 3.972 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.245 0.755 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.230 0.770 41 H 0.072 0.928 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.580 -21.867 -1.136 21.953 hybrid contribution -0.475 1.984 0.365 2.073 sum 1.106 -19.882 -0.771 19.928 Atomic orbital electron populations 1.69906 1.04919 1.25199 1.57453 1.24794 0.95796 0.97750 1.02129 0.86061 0.78592 0.83145 0.77643 1.21500 1.21645 1.20633 1.19092 0.90579 0.82109 1.43539 0.90224 1.44272 1.01198 0.99875 1.87341 1.21829 0.94550 0.85715 0.97468 1.22491 0.95768 0.78926 0.99515 0.87670 1.45705 1.44824 1.11966 1.32049 1.18069 0.79950 0.84525 0.83355 1.90604 1.46888 1.76210 1.26817 1.20434 0.97654 0.93991 0.95403 1.22500 0.99449 0.97908 0.96216 1.22905 0.93958 0.89199 0.98515 1.67800 1.07204 1.36790 1.05239 1.18887 0.97216 0.91433 0.92333 1.20758 0.97306 0.99251 0.94698 1.20997 0.98472 0.96458 0.95805 1.21115 0.99180 0.93219 1.00408 1.22131 0.94002 1.02628 0.92783 1.18697 0.98386 0.93398 0.96462 1.23555 0.95316 0.96972 0.83321 0.91872 1.86208 1.54767 1.67158 1.29512 1.21887 0.85615 0.87598 1.02130 0.93677 0.93528 0.95599 0.75535 0.83706 0.81689 0.84703 0.85317 0.85339 0.81219 0.76975 0.92820 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.34 10.31 55.49 0.57 -25.77 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.07 3.39 -170.07 -0.58 -15.65 16 10 C 0.13 2.81 6.92 -2.53 -0.02 2.80 16 11 C 0.14 2.45 3.20 -65.65 -0.21 2.24 16 12 H 0.11 1.96 7.73 -51.93 -0.40 1.56 16 13 N -0.69 -10.19 5.14 -52.53 -0.27 -10.46 16 14 C 0.55 8.50 7.75 -12.30 -0.10 8.41 16 15 O -0.53 -9.46 13.27 5.32 0.07 -9.39 16 16 C -0.06 -0.84 5.94 -104.35 -0.62 -1.46 16 17 C -0.14 -1.44 9.59 -38.96 -0.37 -1.82 16 18 C 0.13 1.24 11.14 -17.53 -0.20 1.04 16 19 N -0.46 -5.58 10.30 -11.01 -0.11 -5.69 16 20 C 0.12 1.57 6.61 -84.87 -0.56 1.00 16 21 C -0.10 -1.07 9.99 -39.43 -0.39 -1.46 16 22 C -0.10 -0.90 9.94 -39.95 -0.40 -1.30 16 23 C -0.12 -1.27 9.96 -39.89 -0.40 -1.67 16 24 C -0.10 -1.29 9.25 -39.60 -0.37 -1.65 16 25 C -0.07 -0.91 5.76 -106.52 -0.61 -1.52 16 26 C 0.07 1.16 4.22 -24.77 -0.10 1.05 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 O -0.57 -8.41 12.15 -35.23 -0.43 -8.84 16 29 C 0.15 3.46 5.13 -3.06 -0.02 3.44 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 5.14 5.74 -40.82 -0.23 4.91 16 34 H 0.15 1.14 6.55 -52.49 -0.34 0.79 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.17 2.51 4.98 -52.49 -0.26 2.24 16 40 H 0.38 4.37 9.09 45.56 0.41 4.79 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.06 1.42 7.37 -51.93 -0.38 1.04 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -33.03 348.28 -9.23 -42.26 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.10 Total: 9.03 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -4.61 Total: 2.36 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.39 Total: -57.57 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.36 Total: -18.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.03 -9.23 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083616078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.119 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds