Wall clock time and date at job start Fri Apr 10 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48503 * 109.46910 * 270.00251 * 3 2 1 5 5 H 1.48501 * 109.46998 * 30.00238 * 3 2 1 6 6 H 1.48497 * 109.46936 * 150.00063 * 3 2 1 7 7 C 1.38807 * 119.99330 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65573 * 180.02562 * 9 7 2 11 11 C 1.54906 * 104.83707 * 204.09834 * 10 9 7 12 12 H 1.08998 * 111.00774 * 81.06489 * 11 10 9 13 13 N 1.46505 * 111.00265 * 204.91576 * 11 10 9 14 14 C 1.34776 * 120.00203 * 273.54212 * 13 11 10 15 15 O 1.21547 * 119.99542 * 0.02562 * 14 13 11 16 16 C 1.47903 * 120.00130 * 179.97438 * 14 13 11 17 17 C 1.38890 * 121.11193 * 354.15272 * 16 14 13 18 18 C 1.39266 * 119.58113 * 179.97438 * 17 16 14 19 19 N 1.30996 * 121.88532 * 359.97438 * 18 17 16 20 20 C 1.33537 * 121.82274 * 0.02562 * 19 18 17 21 21 C 1.40718 * 120.96926 * 179.97438 * 20 19 18 22 22 C 1.36063 * 119.73775 * 180.02562 * 21 20 19 23 23 C 1.39350 * 121.05762 * 359.97438 * 22 21 20 24 24 C 1.36240 * 120.83754 * 0.02562 * 23 22 21 25 25 C 1.40111 * 119.64584 * 359.71256 * 24 23 22 26 26 C 1.55396 * 101.66372 * 323.07301 * 11 10 9 27 27 H 1.08999 * 110.85314 * 153.69904 * 26 11 10 28 28 O 1.42903 * 110.70092 * 277.04780 * 26 11 10 29 29 C 1.47024 * 125.64667 * 359.97438 * 9 7 2 30 30 H 0.97004 * 119.99852 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36697 * 322.93990 * 10 9 7 32 32 H 1.09005 * 110.36310 * 85.25435 * 10 9 7 33 33 H 0.97008 * 119.99620 * 93.54748 * 13 11 10 34 34 H 1.08001 * 120.21147 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.06198 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.12942 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.46633 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.57705 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.17831 * 180.02562 * 24 23 22 40 40 H 0.96695 * 113.99948 * 174.82322 * 28 26 11 41 41 H 1.08998 * 109.88214 * 298.39256 * 29 9 7 42 42 H 1.09007 * 109.88202 * 59.39764 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.9332 -3.7312 -0.0005 11 6 0.8514 -4.6561 -0.6119 12 1 0.8558 -4.5962 -1.7003 13 7 1.0288 -6.0395 -0.1635 14 6 1.8608 -6.8630 -0.8314 15 8 2.4643 -6.4577 -1.8055 16 6 2.0403 -8.2594 -0.3783 17 6 1.4587 -8.7124 0.7988 18 6 1.6481 -10.0340 1.1950 19 7 2.3633 -10.8728 0.4873 20 6 2.9518 -10.5074 -0.6544 21 6 3.7166 -11.4233 -1.4003 22 6 4.3057 -11.0240 -2.5600 23 6 4.1645 -9.7182 -3.0255 24 6 3.4315 -8.8042 -2.3301 25 6 2.8063 -9.1822 -1.1345 26 6 -0.4521 -4.0433 -0.0285 27 1 -1.3022 -4.2479 -0.6793 28 8 -0.6944 -4.5345 1.2914 29 6 -0.1376 -2.5327 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 2.8325 -3.7407 -0.6164 32 1 2.1666 -4.0419 1.0179 33 1 0.5473 -6.3628 0.6141 34 1 0.8626 -8.0442 1.4026 35 1 1.1917 -10.3774 2.1116 36 1 3.8363 -12.4389 -1.0531 37 1 4.8914 -11.7307 -3.1291 38 1 4.6428 -9.4268 -3.9489 39 1 3.3288 -7.7951 -2.7009 40 1 -1.4515 -4.1239 1.7310 41 1 -0.5538 -2.0846 0.9028 42 1 -0.5586 -2.0495 -0.8812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083616078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:23 Heat of formation + Delta-G solvation = -10.601115 kcal Electronic energy + Delta-G solvation = -27132.452686 eV Core-core repulsion = 23270.618262 eV Total energy + Delta-G solvation = -3861.834424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.18157 -40.79427 -39.40093 -38.08847 -36.46667 -35.62585 -34.55029 -33.56729 -31.55481 -31.16854 -30.18587 -28.84310 -26.75141 -25.76208 -24.56894 -23.82823 -22.51111 -21.86053 -21.59793 -19.48595 -19.03953 -18.58562 -18.50073 -18.08268 -16.90982 -16.79577 -16.54446 -16.26314 -15.93265 -15.82187 -15.60508 -15.20498 -14.88958 -14.81900 -14.75072 -14.42131 -14.21844 -14.06573 -13.94450 -13.20372 -12.87206 -12.79097 -12.76240 -12.62865 -12.34921 -12.29372 -12.13216 -11.92054 -11.88242 -11.56829 -11.42827 -10.90814 -10.78498 -10.38769 -10.22773 -9.81194 -9.29756 -8.96744 -7.90594 -5.26239 -0.96847 -0.22698 0.65781 1.44850 1.46375 1.54899 1.70467 1.82590 2.07188 2.46883 3.07610 3.10897 3.27537 3.28734 3.40387 3.60650 3.65814 3.69606 3.81905 3.86434 3.90709 4.16725 4.21147 4.25381 4.39504 4.45525 4.54500 4.59988 4.64093 4.76992 4.80825 4.92171 5.05778 5.15025 5.32109 5.34673 5.38131 5.45309 5.49930 5.56941 5.63890 5.88436 6.12947 6.40591 6.79458 6.84336 7.05141 7.06859 7.68872 8.31984 9.19225 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002792 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.536922 B =10024.601816 C =10873.139031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.132 3.868 11 C 0.152 3.848 12 H 0.095 0.905 13 N -0.683 5.683 14 C 0.555 3.445 15 O -0.560 6.560 16 C -0.091 4.091 17 C -0.120 4.120 18 C 0.127 3.873 19 N -0.473 5.473 20 C 0.102 3.898 21 C -0.105 4.105 22 C -0.093 4.093 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.086 4.086 26 C 0.094 3.906 27 H 0.095 0.905 28 O -0.564 6.564 29 C 0.158 3.842 30 H 0.250 0.750 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.420 0.580 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.400 0.600 41 H 0.029 0.971 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -23.496 0.398 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.348 5.348 10 C 0.006 3.994 11 C 0.046 3.954 12 H 0.113 0.887 13 N -0.335 5.335 14 C 0.343 3.657 15 O -0.440 6.440 16 C -0.102 4.102 17 C -0.141 4.141 18 C -0.045 4.045 19 N -0.181 5.181 20 C -0.019 4.019 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.089 4.089 26 C 0.034 3.966 27 H 0.112 0.888 28 O -0.373 6.373 29 C 0.033 3.967 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.260 0.740 34 H 0.190 0.810 35 H 0.224 0.776 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.251 0.749 41 H 0.047 0.953 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.393 -24.227 -0.205 24.268 hybrid contribution -0.385 2.630 0.120 2.660 sum 1.008 -21.597 -0.085 21.621 Atomic orbital electron populations 1.70099 1.05965 1.25547 1.57920 1.25584 0.96762 1.00719 1.02147 0.85081 0.77634 0.79092 0.77525 1.21251 1.21530 1.19796 1.19391 0.90874 0.83656 1.43680 0.90668 1.44539 1.02534 1.00489 1.87206 1.21860 0.95116 0.85245 0.97206 1.22068 0.94680 0.79959 0.98733 0.88729 1.45473 1.45050 1.10468 1.32478 1.18454 0.79082 0.85429 0.82710 1.90606 1.48047 1.77074 1.28304 1.20301 1.00017 0.92674 0.97240 1.22844 0.97844 0.98611 0.94775 1.23593 0.92989 0.88610 0.99288 1.67870 1.07614 1.37438 1.05202 1.19194 0.98216 0.91414 0.93110 1.21108 0.96603 0.99819 0.94787 1.21358 0.98027 0.96289 0.95559 1.21426 0.97686 0.93442 1.00545 1.22018 0.96495 1.02400 0.94033 1.18878 0.98952 0.94183 0.96838 1.23174 0.95781 0.92584 0.85054 0.88752 1.86171 1.56029 1.66674 1.28442 1.21757 0.84062 0.91447 0.99464 0.94073 0.95325 0.95724 0.74028 0.81014 0.77619 0.82745 0.81668 0.83345 0.83590 0.74855 0.95284 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.04 10.31 21.65 0.22 -54.82 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.72 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.25 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.62 -32.09 3.39 -691.99 -2.35 -34.44 16 10 C 0.13 5.80 6.92 86.85 0.60 6.41 16 11 C 0.15 5.37 3.20 46.47 0.15 5.52 16 12 H 0.09 3.59 7.73 -2.39 -0.02 3.57 16 13 N -0.68 -19.44 5.14 -438.37 -2.25 -21.69 16 14 C 0.56 17.18 7.75 86.80 0.67 17.85 16 15 O -0.56 -21.10 13.27 -3.86 -0.05 -21.15 16 16 C -0.09 -2.37 5.94 -19.69 -0.12 -2.49 16 17 C -0.12 -2.19 9.59 22.67 0.22 -1.98 16 18 C 0.13 2.11 11.14 85.06 0.95 3.06 16 19 N -0.47 -10.40 10.30 -188.73 -1.94 -12.35 16 20 C 0.10 2.47 6.61 40.34 0.27 2.73 16 21 C -0.10 -2.00 9.99 22.37 0.22 -1.78 16 22 C -0.09 -1.51 9.94 22.03 0.22 -1.29 16 23 C -0.11 -2.29 9.96 22.07 0.22 -2.07 16 24 C -0.13 -3.58 9.25 22.26 0.21 -3.38 16 25 C -0.09 -2.35 5.76 -21.09 -0.12 -2.47 16 26 C 0.09 3.10 4.22 31.87 0.13 3.23 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 28 O -0.56 -15.30 12.15 -148.98 -1.81 -17.11 16 29 C 0.16 7.29 5.13 86.73 0.44 7.73 16 30 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.42 9.63 5.74 -92.70 -0.53 9.10 16 34 H 0.17 2.08 6.55 -2.91 -0.02 2.06 16 35 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.15 4.66 4.98 -2.91 -0.01 4.65 16 40 H 0.40 8.09 9.09 -74.06 -0.67 7.42 16 41 H 0.03 1.46 7.42 -2.39 -0.02 1.45 16 42 H 0.03 1.34 7.37 -2.38 -0.02 1.32 16 Total: -1.00 -75.14 348.28 -0.88 -76.02 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.12 Total: 22.81 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.39 Total: 15.01 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.32 Total: -123.30 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.86 Total: -38.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -75.14 -0.88 -76.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083616078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds