Wall clock time and date at job start Fri Apr 10 2020 14:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47538 * 299.99740 * 3 2 1 6 6 H 1.48501 * 109.47199 * 60.00024 * 3 2 1 7 7 C 1.38811 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64496 * 179.97438 * 9 7 2 11 11 C 1.54325 * 107.27293 * 178.97619 * 10 9 7 12 12 H 1.08994 * 110.71758 * 96.34245 * 11 10 9 13 13 N 1.46493 * 110.72183 * 219.44532 * 11 10 9 14 14 C 1.34782 * 120.00100 * 271.15460 * 13 11 10 15 15 O 1.21544 * 119.99598 * 0.02562 * 14 13 11 16 16 C 1.47883 * 119.99982 * 179.97438 * 14 13 11 17 17 C 1.40571 * 119.70655 * 0.02562 * 16 14 13 18 18 C 1.35822 * 120.73640 * 179.97438 * 17 16 14 19 19 C 1.40547 * 119.97795 * 0.04245 * 18 17 16 20 20 C 1.40827 * 121.13653 * 179.97438 * 19 18 17 21 21 C 1.36549 * 118.19849 * 179.97438 * 20 19 18 22 22 C 1.39416 * 119.94149 * 0.02562 * 21 20 19 23 23 N 1.31016 * 121.71534 * 359.71014 * 22 21 20 24 24 C 1.33745 * 121.34548 * 0.57831 * 23 22 21 25 25 C 1.38401 * 119.70322 * 180.02562 * 16 14 13 26 26 C 1.55159 * 103.09633 * 337.89544 * 11 10 9 27 27 H 1.09009 * 110.99931 * 153.48699 * 26 11 10 28 28 O 1.42896 * 111.00593 * 277.33383 * 26 11 10 29 29 C 1.47419 * 125.65252 * 0.03860 * 9 7 2 30 30 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88435 * 59.55542 * 10 9 7 32 32 H 1.08997 * 109.88450 * 298.39226 * 10 9 7 33 33 H 0.97009 * 120.00324 * 91.15563 * 13 11 10 34 34 H 1.08001 * 119.63446 * 359.97307 * 17 16 14 35 35 H 1.07998 * 120.01079 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.89422 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.02369 * 179.97438 * 21 20 19 38 38 H 1.08008 * 119.14031 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.23799 * 0.02562 * 25 16 14 40 40 H 0.96698 * 114.00279 * 180.02562 * 28 26 11 41 41 H 1.08999 * 110.36428 * 322.93834 * 29 9 7 42 42 H 1.09001 * 110.36634 * 85.14193 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9318 -3.7274 0.0005 11 6 0.7784 -4.7525 0.0269 12 1 0.5486 -5.1002 -0.9802 13 7 1.1080 -5.8813 0.9005 14 6 1.7583 -6.9516 0.4023 15 8 2.0716 -6.9800 -0.7718 16 6 2.0915 -8.0908 1.2843 17 6 1.7266 -8.0512 2.6413 18 6 2.0217 -9.0861 3.4700 19 6 2.7000 -10.2123 2.9730 20 6 3.0186 -11.2987 3.8106 21 6 3.6782 -12.3624 3.2647 22 6 4.0174 -12.3514 1.9125 23 7 3.7151 -11.3414 1.1347 24 6 3.0750 -10.2665 1.6076 25 6 2.7598 -9.1866 0.7664 26 6 -0.4051 -3.9351 0.6089 27 1 -1.3606 -4.3373 0.2720 28 8 -0.3447 -3.8915 2.0359 29 6 -0.1415 -2.5332 -0.0008 30 1 -0.4850 0.8401 -0.0004 31 1 2.5578 -3.8510 0.8842 32 1 2.5287 -3.8642 -0.9012 33 1 0.8583 -5.8585 1.8376 34 1 1.2059 -7.1882 3.0293 35 1 1.7355 -9.0434 4.5105 36 1 2.7479 -11.2909 4.8560 37 1 3.9375 -13.2111 3.8802 38 1 4.5394 -13.1995 1.4943 39 1 3.0377 -9.2109 -0.2769 40 1 -1.0644 -3.3917 2.4449 41 1 -0.5998 -1.7587 0.6142 42 1 -0.5265 -2.4850 -1.0194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083872439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:50 Heat of formation + Delta-G solvation = 9.449609 kcal Electronic energy + Delta-G solvation = -26716.868315 eV Core-core repulsion = 22855.903356 eV Total energy + Delta-G solvation = -3860.964960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16494 -39.75480 -38.00763 -36.84194 -34.76148 -34.10292 -33.76835 -31.87071 -30.86553 -30.28898 -28.54510 -27.11105 -25.20221 -24.24749 -24.09884 -22.41655 -21.23444 -20.53370 -19.90927 -18.61783 -17.77947 -17.23983 -17.18203 -16.62548 -16.21607 -15.39771 -14.96317 -14.85505 -14.76646 -14.46271 -14.32708 -14.12361 -14.02385 -13.79172 -13.39278 -13.09630 -12.92767 -12.56869 -12.12735 -12.00725 -11.86130 -11.71249 -11.35529 -11.09121 -10.89588 -10.85764 -10.64717 -10.36468 -10.06018 -9.87309 -9.85441 -9.79107 -9.25879 -9.13347 -8.76065 -8.69434 -8.56140 -6.85778 -5.70418 -3.10120 -0.02058 0.34962 1.60339 2.27724 3.18396 3.26119 3.38847 3.44855 3.47304 3.86582 3.98126 4.23103 4.36410 4.46703 4.51644 4.55507 4.63935 4.71477 4.85982 4.93493 5.15324 5.31811 5.35482 5.45061 5.47625 5.55912 5.59777 5.70317 5.74369 5.90608 5.96204 6.03420 6.05617 6.17936 6.25517 6.44049 6.50269 6.70205 6.92297 7.24617 7.55541 7.57279 7.69645 7.75778 8.08640 8.30050 8.36760 9.17465 9.78292 10.41432 11.34871 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002391 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.053049 B =11707.666993 C =11866.225646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.014 4.014 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.131 3.869 11 C 0.142 3.858 12 H 0.103 0.897 13 N -0.700 5.700 14 C 0.551 3.449 15 O -0.536 6.536 16 C -0.110 4.110 17 C -0.087 4.087 18 C -0.102 4.102 19 C -0.088 4.088 20 C -0.061 4.061 21 C -0.171 4.171 22 C 0.127 3.873 23 N -0.465 5.465 24 C 0.116 3.884 25 C -0.025 4.025 26 C 0.067 3.933 27 H 0.060 0.940 28 O -0.562 6.562 29 C 0.127 3.873 30 H 0.251 0.749 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.407 0.593 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.380 0.620 41 H 0.116 0.884 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -23.255 10.297 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.004 3.996 11 C 0.037 3.963 12 H 0.121 0.879 13 N -0.351 5.351 14 C 0.338 3.662 15 O -0.414 6.414 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.091 4.091 20 C -0.087 4.087 21 C -0.191 4.191 22 C -0.046 4.046 23 N -0.173 5.173 24 C -0.004 4.004 25 C -0.045 4.045 26 C 0.006 3.994 27 H 0.078 0.922 28 O -0.368 6.368 29 C 0.001 3.999 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.244 0.756 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.169 0.831 40 H 0.228 0.772 41 H 0.133 0.867 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.709 -23.275 8.415 24.809 hybrid contribution -0.359 1.183 1.419 1.882 sum 1.350 -22.092 9.833 24.219 Atomic orbital electron populations 1.69727 1.04904 1.24695 1.58355 1.24762 0.95783 0.97719 1.02572 0.85953 0.78702 0.83399 0.77205 1.20512 1.21748 1.21764 1.19152 0.90628 0.82249 1.42255 0.90329 1.44292 1.01431 0.99707 1.86860 1.21602 0.93828 0.85533 0.98660 1.22203 0.95347 0.84791 0.93970 0.87944 1.45762 1.57861 1.17168 1.14339 1.18209 0.78335 0.82346 0.87341 1.90788 1.53207 1.80791 1.16595 1.20002 1.01667 0.95585 0.94215 1.21073 0.98233 0.98932 0.92304 1.20873 0.98486 0.92499 1.00216 1.18969 0.99669 0.96044 0.94376 1.21520 0.95180 0.92100 0.99876 1.21958 1.00286 0.99811 0.97005 1.23015 0.95163 0.96035 0.90409 1.68036 1.10872 1.00250 1.38136 1.18772 0.97256 0.93548 0.90864 1.21259 0.93157 0.89537 1.00544 1.23640 0.95580 0.98731 0.81402 0.92203 1.86218 1.54609 1.76972 1.19029 1.22639 0.85930 0.92327 0.98961 0.93777 0.95201 0.95263 0.75551 0.84666 0.84568 0.84163 0.84368 0.82211 0.83087 0.77249 0.86662 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.42 10.09 55.49 0.56 -25.86 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 3 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.21 -6.04 10.27 -15.06 -0.15 -6.19 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.37 3.40 -169.94 -0.58 -15.95 16 10 C 0.13 2.93 7.00 -3.06 -0.02 2.91 16 11 C 0.14 2.64 3.15 -66.10 -0.21 2.43 16 12 H 0.10 1.95 7.62 -51.93 -0.40 1.55 16 13 N -0.70 -11.01 5.03 -52.96 -0.27 -11.28 16 14 C 0.55 8.97 7.77 -12.31 -0.10 8.87 16 15 O -0.54 -10.53 15.98 5.33 0.09 -10.44 16 16 C -0.11 -1.46 5.87 -105.01 -0.62 -2.08 16 17 C -0.09 -0.91 9.44 -39.57 -0.37 -1.28 16 18 C -0.10 -0.91 9.74 -39.58 -0.39 -1.30 16 19 C -0.09 -0.89 5.75 -106.72 -0.61 -1.50 16 20 C -0.06 -0.44 9.89 -39.21 -0.39 -0.83 16 21 C -0.17 -1.09 10.03 -39.75 -0.40 -1.49 16 22 C 0.13 1.04 11.15 -17.46 -0.19 0.85 16 23 N -0.47 -5.52 10.34 -10.98 -0.11 -5.63 16 24 C 0.12 1.43 6.60 -84.87 -0.56 0.87 16 25 C -0.03 -0.34 9.56 -38.68 -0.37 -0.71 16 26 C 0.07 1.20 4.31 -24.46 -0.11 1.09 16 27 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 28 O -0.56 -9.20 12.23 -35.23 -0.43 -9.63 16 29 C 0.13 2.95 5.63 -2.41 -0.01 2.94 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.41 5.63 5.56 -40.82 -0.23 5.40 16 34 H 0.14 1.20 6.34 -52.49 -0.33 0.86 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.15 2.15 7.60 -52.49 -0.40 1.75 16 40 H 0.38 4.94 9.12 45.56 0.42 5.36 16 41 H 0.12 2.95 5.87 -51.93 -0.30 2.64 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -34.50 352.50 -9.21 -43.72 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.17 Total: 8.56 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -4.59 Total: 4.09 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.40 Total: -58.72 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.35 Total: -20.07 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.50 -9.21 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083872439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.167 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds