Wall clock time and date at job start Fri Apr 10 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47538 * 299.99740 * 3 2 1 6 6 H 1.48501 * 109.47199 * 60.00024 * 3 2 1 7 7 C 1.38811 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64496 * 179.97438 * 9 7 2 11 11 C 1.54325 * 107.27293 * 178.97619 * 10 9 7 12 12 H 1.08994 * 110.71758 * 96.34245 * 11 10 9 13 13 N 1.46493 * 110.72183 * 219.44532 * 11 10 9 14 14 C 1.34782 * 120.00100 * 271.15460 * 13 11 10 15 15 O 1.21544 * 119.99598 * 0.02562 * 14 13 11 16 16 C 1.47883 * 119.99982 * 179.97438 * 14 13 11 17 17 C 1.40571 * 119.70655 * 0.02562 * 16 14 13 18 18 C 1.35822 * 120.73640 * 179.97438 * 17 16 14 19 19 C 1.40547 * 119.97795 * 0.04245 * 18 17 16 20 20 C 1.40827 * 121.13653 * 179.97438 * 19 18 17 21 21 C 1.36549 * 118.19849 * 179.97438 * 20 19 18 22 22 C 1.39416 * 119.94149 * 0.02562 * 21 20 19 23 23 N 1.31016 * 121.71534 * 359.71014 * 22 21 20 24 24 C 1.33745 * 121.34548 * 0.57831 * 23 22 21 25 25 C 1.38401 * 119.70322 * 180.02562 * 16 14 13 26 26 C 1.55159 * 103.09633 * 337.89544 * 11 10 9 27 27 H 1.09009 * 110.99931 * 153.48699 * 26 11 10 28 28 O 1.42896 * 111.00593 * 277.33383 * 26 11 10 29 29 C 1.47419 * 125.65252 * 0.03860 * 9 7 2 30 30 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88435 * 59.55542 * 10 9 7 32 32 H 1.08997 * 109.88450 * 298.39226 * 10 9 7 33 33 H 0.97009 * 120.00324 * 91.15563 * 13 11 10 34 34 H 1.08001 * 119.63446 * 359.97307 * 17 16 14 35 35 H 1.07998 * 120.01079 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.89422 * 0.02562 * 20 19 18 37 37 H 1.08001 * 120.02369 * 179.97438 * 21 20 19 38 38 H 1.08008 * 119.14031 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.23799 * 0.02562 * 25 16 14 40 40 H 0.96698 * 114.00279 * 180.02562 * 28 26 11 41 41 H 1.08999 * 110.36428 * 322.93834 * 29 9 7 42 42 H 1.09001 * 110.36634 * 85.14193 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9318 -3.7274 0.0005 11 6 0.7784 -4.7525 0.0269 12 1 0.5486 -5.1002 -0.9802 13 7 1.1080 -5.8813 0.9005 14 6 1.7583 -6.9516 0.4023 15 8 2.0716 -6.9800 -0.7718 16 6 2.0915 -8.0908 1.2843 17 6 1.7266 -8.0512 2.6413 18 6 2.0217 -9.0861 3.4700 19 6 2.7000 -10.2123 2.9730 20 6 3.0186 -11.2987 3.8106 21 6 3.6782 -12.3624 3.2647 22 6 4.0174 -12.3514 1.9125 23 7 3.7151 -11.3414 1.1347 24 6 3.0750 -10.2665 1.6076 25 6 2.7598 -9.1866 0.7664 26 6 -0.4051 -3.9351 0.6089 27 1 -1.3606 -4.3373 0.2720 28 8 -0.3447 -3.8915 2.0359 29 6 -0.1415 -2.5332 -0.0008 30 1 -0.4850 0.8401 -0.0004 31 1 2.5578 -3.8510 0.8842 32 1 2.5287 -3.8642 -0.9012 33 1 0.8583 -5.8585 1.8376 34 1 1.2059 -7.1882 3.0293 35 1 1.7355 -9.0434 4.5105 36 1 2.7479 -11.2909 4.8560 37 1 3.9375 -13.2111 3.8802 38 1 4.5394 -13.1995 1.4943 39 1 3.0377 -9.2109 -0.2769 40 1 -1.0644 -3.3917 2.4449 41 1 -0.5998 -1.7587 0.6142 42 1 -0.5265 -2.4850 -1.0194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083872439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:49 Heat of formation + Delta-G solvation = -16.717412 kcal Electronic energy + Delta-G solvation = -26718.003003 eV Core-core repulsion = 22855.903356 eV Total energy + Delta-G solvation = -3862.099647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96858 -41.01550 -39.49546 -37.73774 -36.38363 -35.59403 -34.47891 -33.68399 -31.84683 -31.05068 -30.26575 -28.78767 -26.71439 -25.54102 -24.87356 -23.22259 -22.58644 -22.06560 -21.49269 -19.74896 -19.04618 -18.55093 -18.26988 -17.76962 -17.18019 -16.89670 -16.67395 -16.21567 -15.83132 -15.60306 -15.49382 -15.26064 -15.00795 -14.66869 -14.64342 -14.56730 -14.30506 -13.91209 -13.58516 -13.23842 -12.99158 -12.94414 -12.78888 -12.72142 -12.52169 -12.26732 -12.12475 -11.92040 -11.87220 -11.56354 -11.20372 -10.89295 -10.73196 -10.49201 -10.24394 -9.83173 -9.34425 -8.91924 -7.82180 -5.25597 -0.79263 -0.37106 0.85689 1.42271 1.45921 1.46602 1.57017 1.92634 2.22925 2.47622 3.07837 3.14325 3.28780 3.29857 3.50730 3.57505 3.70669 3.82068 3.83384 3.92283 3.95121 4.04641 4.06512 4.24664 4.32691 4.46014 4.57832 4.70673 4.72806 4.83100 4.86346 4.86829 4.98482 5.09009 5.16964 5.31165 5.32169 5.39657 5.45679 5.51832 5.70562 5.77549 6.24558 6.47162 6.90075 6.91102 7.07626 7.11015 7.71312 8.34132 9.20064 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002391 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.053049 B =11707.666993 C =11866.225646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.131 3.869 11 C 0.152 3.848 12 H 0.097 0.903 13 N -0.687 5.687 14 C 0.551 3.449 15 O -0.580 6.580 16 C -0.120 4.120 17 C -0.099 4.099 18 C -0.081 4.081 19 C -0.101 4.101 20 C -0.057 4.057 21 C -0.161 4.161 22 C 0.126 3.874 23 N -0.512 5.512 24 C 0.093 3.907 25 C -0.048 4.048 26 C 0.093 3.907 27 H 0.097 0.903 28 O -0.562 6.562 29 C 0.126 3.874 30 H 0.250 0.750 31 H 0.024 0.976 32 H 0.009 0.991 33 H 0.419 0.581 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.124 0.876 40 H 0.397 0.603 41 H 0.094 0.906 42 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -25.388 13.868 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.004 3.996 11 C 0.046 3.954 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.339 3.661 15 O -0.461 6.461 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.083 4.083 21 C -0.181 4.181 22 C -0.046 4.046 23 N -0.221 5.221 24 C -0.027 4.027 25 C -0.068 4.068 26 C 0.032 3.968 27 H 0.115 0.885 28 O -0.370 6.370 29 C 0.001 3.999 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.170 0.830 35 H 0.196 0.804 36 H 0.198 0.802 37 H 0.198 0.802 38 H 0.205 0.795 39 H 0.142 0.858 40 H 0.248 0.752 41 H 0.111 0.889 42 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 1.432 -25.425 12.030 28.164 hybrid contribution -0.189 1.672 0.356 1.720 sum 1.243 -23.753 12.385 26.817 Atomic orbital electron populations 1.69942 1.05868 1.25194 1.58421 1.25554 0.96788 1.00614 1.02342 0.84972 0.77818 0.79273 0.76995 1.19827 1.21750 1.21195 1.19413 0.90814 0.83750 1.42975 0.90991 1.44551 1.02718 1.00157 1.86764 1.21635 0.95072 0.85604 0.97272 1.21879 0.94093 0.84829 0.94618 0.88502 1.45559 1.57691 1.16114 1.14530 1.18728 0.77234 0.82927 0.87168 1.90758 1.54886 1.81703 1.18704 1.19776 1.03131 0.94283 0.95250 1.21202 0.99185 1.00471 0.90918 1.21320 0.96080 0.90899 1.01659 1.19299 0.99713 0.97609 0.93661 1.22011 0.94117 0.90832 1.01293 1.22421 0.98557 1.00763 0.96324 1.23693 0.93887 0.95551 0.91508 1.68009 1.12751 1.01397 1.39957 1.18833 0.98318 0.93467 0.92055 1.21151 0.94748 0.91020 0.99892 1.23307 0.96584 0.94876 0.82040 0.88504 1.86183 1.55912 1.77159 1.17773 1.22560 0.84407 0.95205 0.97757 0.93998 0.95836 0.97289 0.74087 0.82969 0.80407 0.80198 0.80236 0.79518 0.85762 0.75188 0.88871 0.98167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.70 10.09 21.65 0.22 -54.48 16 2 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -32.72 3.40 -691.55 -2.35 -35.07 16 10 C 0.13 6.10 7.00 86.73 0.61 6.70 16 11 C 0.15 5.72 3.15 46.18 0.15 5.86 16 12 H 0.10 3.79 7.62 -2.39 -0.02 3.77 16 13 N -0.69 -21.61 5.03 -439.76 -2.21 -23.82 16 14 C 0.55 18.68 7.77 86.80 0.67 19.35 16 15 O -0.58 -24.40 15.98 -3.85 -0.06 -24.46 16 16 C -0.12 -3.28 5.87 -20.12 -0.12 -3.40 16 17 C -0.10 -1.92 9.44 22.28 0.21 -1.71 16 18 C -0.08 -1.18 9.74 22.27 0.22 -0.97 16 19 C -0.10 -1.77 5.75 -21.23 -0.12 -1.89 16 20 C -0.06 -0.56 9.89 22.51 0.22 -0.34 16 21 C -0.16 -1.37 10.03 22.16 0.22 -1.14 16 22 C 0.13 1.80 11.15 85.10 0.95 2.74 16 23 N -0.51 -12.19 10.34 -188.65 -1.95 -14.14 16 24 C 0.09 2.31 6.60 40.25 0.27 2.58 16 25 C -0.05 -1.40 9.56 22.85 0.22 -1.18 16 26 C 0.09 3.22 4.31 32.07 0.14 3.36 16 27 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 28 O -0.56 -17.27 12.23 -148.98 -1.82 -19.09 16 29 C 0.13 5.97 5.63 86.94 0.49 6.46 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 31 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.42 11.03 5.56 -92.70 -0.52 10.51 16 34 H 0.15 2.31 6.34 -2.91 -0.02 2.29 16 35 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.12 4.08 7.60 -2.91 -0.02 4.06 16 40 H 0.40 9.38 9.12 -74.06 -0.68 8.71 16 41 H 0.09 4.85 5.87 -2.39 -0.01 4.84 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -80.29 352.50 -0.81 -81.09 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.11 Total: 21.54 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 5.45 Total: 20.41 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -6.29 Total: -127.50 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.88 Total: -43.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.29 -0.81 -81.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083872439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.377 kcal (2) G-P(sol) polarization free energy of solvation -80.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds