Wall clock time and date at job start Fri Apr 10 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47367 * 239.99730 * 3 2 1 5 5 H 1.48498 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46831 * 119.99735 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.53946 * 113.58270 * 252.71735 * 14 13 11 16 16 C 1.52901 * 86.78254 * 220.66295 * 15 14 13 17 17 C 1.52914 * 121.13663 * 150.61793 * 16 15 14 18 18 C 1.53958 * 86.78066 * 100.81839 * 17 16 15 19 19 N 1.46894 * 113.57697 * 139.34090 * 18 17 16 20 20 C 1.46904 * 111.00088 * 107.28174 * 19 18 17 21 21 C 1.50700 * 109.47044 * 179.97438 * 20 19 18 22 22 N 1.34777 * 120.00136 * 179.97438 * 21 20 19 23 23 O 1.21290 * 120.00159 * 359.97438 * 21 20 19 24 24 C 1.52908 * 121.13284 * 259.17541 * 16 15 14 25 25 C 1.52906 * 88.04410 * 24.89801 * 16 15 14 26 26 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 28 28 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 29 29 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 30 30 H 1.09004 * 112.82216 * 23.91230 * 14 13 11 31 31 H 1.09004 * 113.65610 * 335.13676 * 15 14 13 32 32 H 1.09002 * 113.66455 * 106.18586 * 15 14 13 33 33 H 1.08997 * 113.66574 * 215.28850 * 17 16 15 34 34 H 1.09000 * 113.66070 * 346.35156 * 17 16 15 35 35 H 1.09008 * 113.64947 * 270.11960 * 18 17 16 36 36 H 1.00904 * 110.99817 * 231.22834 * 19 18 17 37 37 H 1.08994 * 109.46701 * 299.99325 * 20 19 18 38 38 H 1.08999 * 109.47294 * 59.99630 * 20 19 18 39 39 H 0.96995 * 119.99988 * 359.97438 * 22 21 20 40 40 H 0.97001 * 119.99966 * 180.02562 * 22 21 20 41 41 H 1.08995 * 113.66486 * 13.65749 * 24 16 15 42 42 H 1.09008 * 113.65753 * 144.71431 * 24 16 15 43 43 H 1.08999 * 113.66138 * 220.62589 * 25 16 15 44 44 H 1.09000 * 113.66105 * 89.57309 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 6 2.5058 -8.4394 1.3451 16 6 2.8853 -9.6774 0.5319 17 6 3.8440 -10.7284 1.0927 18 6 2.5957 -11.5709 1.4123 19 7 2.7650 -13.0025 1.1303 20 6 2.8839 -13.7738 2.3749 21 6 3.0552 -15.2345 2.0462 22 7 3.1857 -16.1377 3.0380 23 8 3.0757 -15.5974 0.8890 24 6 1.8785 -10.8021 0.2878 25 6 3.3128 -8.7399 -0.5978 26 1 -0.4850 0.8400 -0.0004 27 1 3.1246 -3.7312 -0.8905 28 1 3.1245 -3.7312 0.8895 29 1 3.8010 -6.1834 -0.0004 30 1 1.3226 -7.7888 -0.4103 31 1 3.3226 -8.0461 1.9502 32 1 1.5776 -8.5517 1.9055 33 1 4.4923 -11.1756 0.3392 34 1 4.3868 -10.3974 1.9781 35 1 2.1819 -11.3811 2.4028 36 1 2.0087 -13.3506 0.5601 37 1 3.7492 -13.4239 2.9378 38 1 1.9827 -13.6396 2.9731 39 1 3.1697 -15.8475 3.9634 40 1 3.2963 -17.0779 2.8264 41 1 0.8512 -10.5299 0.5300 42 1 1.9745 -11.2700 -0.6921 43 1 3.0293 -9.0922 -1.5896 44 1 4.3565 -8.4311 -0.5387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120665561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:13 Heat of formation + Delta-G solvation = -34.817806 kcal Electronic energy + Delta-G solvation = -24089.547948 eV Core-core repulsion = 20362.107361 eV Total energy + Delta-G solvation = -3727.440587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98384 -39.85701 -38.84835 -36.52492 -34.19466 -33.92290 -32.42190 -32.04285 -28.99492 -27.06478 -26.03056 -26.01288 -25.48241 -23.05655 -21.12627 -20.82335 -20.33712 -18.31965 -17.90510 -17.74607 -17.24731 -16.52337 -16.32379 -16.09832 -15.73891 -15.34462 -15.02508 -14.80626 -14.79510 -14.20497 -14.01414 -13.45380 -13.38181 -13.16113 -12.98701 -12.65257 -12.55432 -12.49636 -12.31169 -11.98744 -11.43828 -11.21868 -11.03807 -11.03142 -10.86840 -10.72245 -10.45172 -10.34032 -10.20135 -10.17672 -9.80210 -9.33307 -9.05345 -8.89760 -8.79991 -8.22752 -6.48860 -6.20608 -3.91183 2.16722 2.88581 3.07074 3.09951 3.24086 3.28354 3.32891 3.74664 3.79047 4.17350 4.19244 4.21577 4.34636 4.38155 4.44987 4.65270 4.69622 4.75913 4.82974 4.96213 5.14004 5.14532 5.33786 5.46175 5.51942 5.56968 5.60085 5.63864 5.69582 5.73235 5.81204 5.90527 5.95681 6.09363 6.15814 6.22821 6.25266 6.55121 6.73010 6.80288 6.91825 7.60101 7.76620 7.78042 8.35910 8.65071 9.24539 10.86771 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.052357 B = 0.001581 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.666248 B =17708.543112 C =17774.136403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.729 5.729 14 C 0.129 3.871 15 C -0.128 4.128 16 C -0.103 4.103 17 C -0.107 4.107 18 C 0.059 3.941 19 N -0.662 5.662 20 C 0.038 3.962 21 C 0.514 3.486 22 N -0.859 5.859 23 O -0.529 6.529 24 C -0.118 4.118 25 C -0.129 4.129 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.352 0.648 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.401 0.599 40 H 0.402 0.598 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 -29.301 7.221 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.381 5.381 14 C 0.023 3.977 15 C -0.167 4.167 16 C -0.104 4.104 17 C -0.146 4.146 18 C -0.050 4.050 19 N -0.295 5.295 20 C -0.095 4.095 21 C 0.299 3.701 22 N -0.424 5.424 23 O -0.404 6.404 24 C -0.156 4.156 25 C -0.167 4.167 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.232 0.768 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.172 0.828 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.229 0.771 40 H 0.233 0.767 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.659 -29.507 6.301 31.129 hybrid contribution 1.628 1.083 0.866 2.139 sum 9.287 -28.424 7.167 30.750 Atomic orbital electron populations 1.70004 1.05953 1.27551 1.46803 1.24982 0.95014 0.98994 0.94526 0.86231 0.79243 0.81267 0.78794 1.19933 1.20808 1.19959 1.22835 0.94881 0.91708 1.59046 0.90990 1.85387 1.04997 0.96297 1.96721 1.23544 1.06536 0.95542 1.04883 1.20344 0.86619 0.86379 0.74799 1.90690 1.15422 1.85621 1.47588 1.46008 1.09698 1.05247 1.77187 1.22400 0.99262 0.79870 0.96166 1.23220 1.02103 0.94100 0.97236 1.22046 0.98000 0.92440 0.97927 1.22887 0.95965 0.94765 1.00940 1.23088 0.98001 0.85875 0.98051 1.60341 1.51783 1.01822 1.15553 1.21879 1.02875 0.90714 0.94020 1.20667 0.75492 0.88544 0.85443 1.43880 1.77662 1.11099 1.09762 1.90777 1.48735 1.81052 1.19809 1.22974 0.98109 0.95255 0.99214 1.23169 0.99706 0.95542 0.98328 0.92138 0.89244 0.89266 0.76795 0.86903 0.89421 0.90956 0.88960 0.91648 0.90690 0.82794 0.87894 0.92124 0.77078 0.76720 0.90919 0.88777 0.90661 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 12 O -0.52 -11.79 15.46 5.56 0.09 -11.71 16 13 N -0.73 -9.64 5.35 -52.86 -0.28 -9.92 16 14 C 0.13 1.49 4.24 -66.95 -0.28 1.20 16 15 C -0.13 -1.23 7.64 -26.29 -0.20 -1.43 16 16 C -0.10 -0.82 1.11 -154.72 -0.17 -0.99 16 17 C -0.11 -0.78 7.64 -26.28 -0.20 -0.98 16 18 C 0.06 0.40 4.14 -66.73 -0.28 0.12 16 19 N -0.66 -4.83 6.18 -106.95 -0.66 -5.49 16 20 C 0.04 0.20 6.01 -4.97 -0.03 0.17 16 21 C 0.51 3.56 8.14 -10.99 -0.09 3.47 16 22 N -0.86 -2.60 8.87 31.22 0.28 -2.32 16 23 O -0.53 -6.24 17.04 5.55 0.09 -6.14 16 24 C -0.12 -0.88 7.41 -26.29 -0.19 -1.07 16 25 C -0.13 -1.12 7.59 -26.29 -0.20 -1.32 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.40 4.10 8.73 -40.82 -0.36 3.74 16 30 H 0.11 1.55 7.47 -51.93 -0.39 1.16 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.47 7.87 -51.92 -0.41 0.06 16 36 H 0.35 2.73 8.24 -39.29 -0.32 2.41 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.21 8.13 -51.93 -0.42 -0.21 16 39 H 0.40 -0.02 8.83 -40.82 -0.36 -0.38 16 40 H 0.40 1.04 8.93 -40.82 -0.36 0.67 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -37.43 384.34 -9.33 -46.76 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.82 Total: 2.89 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.31 Total: -6.90 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.07 Total: -43.21 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.43 -9.33 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.937 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds