Wall clock time and date at job start Fri Apr 10 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47367 * 239.99730 * 3 2 1 5 5 H 1.48498 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46831 * 119.99735 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.53946 * 113.58270 * 252.71735 * 14 13 11 16 16 C 1.52901 * 86.78254 * 220.66295 * 15 14 13 17 17 C 1.52914 * 121.13663 * 150.61793 * 16 15 14 18 18 C 1.53958 * 86.78066 * 100.81839 * 17 16 15 19 19 N 1.46894 * 113.57697 * 139.34090 * 18 17 16 20 20 C 1.46904 * 111.00088 * 107.28174 * 19 18 17 21 21 C 1.50700 * 109.47044 * 179.97438 * 20 19 18 22 22 N 1.34777 * 120.00136 * 179.97438 * 21 20 19 23 23 O 1.21290 * 120.00159 * 359.97438 * 21 20 19 24 24 C 1.52908 * 121.13284 * 259.17541 * 16 15 14 25 25 C 1.52906 * 88.04410 * 24.89801 * 16 15 14 26 26 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 28 28 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 29 29 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 30 30 H 1.09004 * 112.82216 * 23.91230 * 14 13 11 31 31 H 1.09004 * 113.65610 * 335.13676 * 15 14 13 32 32 H 1.09002 * 113.66455 * 106.18586 * 15 14 13 33 33 H 1.08997 * 113.66574 * 215.28850 * 17 16 15 34 34 H 1.09000 * 113.66070 * 346.35156 * 17 16 15 35 35 H 1.09008 * 113.64947 * 270.11960 * 18 17 16 36 36 H 1.00904 * 110.99817 * 231.22834 * 19 18 17 37 37 H 1.08994 * 109.46701 * 299.99325 * 20 19 18 38 38 H 1.08999 * 109.47294 * 59.99630 * 20 19 18 39 39 H 0.96995 * 119.99988 * 359.97438 * 22 21 20 40 40 H 0.97001 * 119.99966 * 180.02562 * 22 21 20 41 41 H 1.08995 * 113.66486 * 13.65749 * 24 16 15 42 42 H 1.09008 * 113.65753 * 144.71431 * 24 16 15 43 43 H 1.08999 * 113.66138 * 220.62589 * 25 16 15 44 44 H 1.09000 * 113.66105 * 89.57309 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 6 2.5058 -8.4394 1.3451 16 6 2.8853 -9.6774 0.5319 17 6 3.8440 -10.7284 1.0927 18 6 2.5957 -11.5709 1.4123 19 7 2.7650 -13.0025 1.1303 20 6 2.8839 -13.7738 2.3749 21 6 3.0552 -15.2345 2.0462 22 7 3.1857 -16.1377 3.0380 23 8 3.0757 -15.5974 0.8890 24 6 1.8785 -10.8021 0.2878 25 6 3.3128 -8.7399 -0.5978 26 1 -0.4850 0.8400 -0.0004 27 1 3.1246 -3.7312 -0.8905 28 1 3.1245 -3.7312 0.8895 29 1 3.8010 -6.1834 -0.0004 30 1 1.3226 -7.7888 -0.4103 31 1 3.3226 -8.0461 1.9502 32 1 1.5776 -8.5517 1.9055 33 1 4.4923 -11.1756 0.3392 34 1 4.3868 -10.3974 1.9781 35 1 2.1819 -11.3811 2.4028 36 1 2.0087 -13.3506 0.5601 37 1 3.7492 -13.4239 2.9378 38 1 1.9827 -13.6396 2.9731 39 1 3.1697 -15.8475 3.9634 40 1 3.2963 -17.0779 2.8264 41 1 0.8512 -10.5299 0.5300 42 1 1.9745 -11.2700 -0.6921 43 1 3.0293 -9.0922 -1.5896 44 1 4.3565 -8.4311 -0.5387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120665561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:13 Heat of formation + Delta-G solvation = -65.945609 kcal Electronic energy + Delta-G solvation = -24090.897751 eV Core-core repulsion = 20362.107361 eV Total energy + Delta-G solvation = -3728.790390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75306 -40.48838 -40.09446 -37.33559 -34.93486 -34.58448 -34.55610 -33.01419 -30.47902 -27.71236 -27.53307 -26.76919 -26.60784 -23.95261 -21.78032 -21.57311 -21.44201 -19.83760 -18.90094 -18.31411 -17.87511 -17.70827 -17.34450 -16.87041 -16.81670 -16.48008 -16.19649 -16.00996 -15.98201 -15.52561 -14.79174 -14.68304 -14.50412 -14.10782 -13.99973 -13.74314 -13.54910 -13.30415 -13.16254 -13.04675 -12.93516 -12.85671 -12.62400 -12.30620 -11.88250 -11.77127 -11.51141 -11.12276 -11.11488 -10.99627 -10.94321 -10.71714 -10.62425 -10.26913 -9.97681 -9.37824 -8.65962 -8.33638 -6.11996 1.28301 1.44650 1.48060 1.58018 1.62621 1.67447 2.27864 2.35670 2.51006 3.00398 3.27693 3.33359 3.48903 3.56013 3.64333 3.82204 3.88910 3.96949 4.03501 4.09435 4.32431 4.34083 4.45741 4.46942 4.50251 4.52576 4.79938 4.82109 4.90382 4.97984 5.01716 5.04914 5.09706 5.26375 5.35810 5.42243 5.50058 5.64932 5.91046 6.09445 6.20358 6.32235 6.54279 6.57020 7.07444 7.29271 7.39574 8.75349 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.052357 B = 0.001581 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.666248 B =17708.543112 C =17774.136403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.702 5.702 14 C 0.112 3.888 15 C -0.121 4.121 16 C -0.095 4.095 17 C -0.100 4.100 18 C 0.067 3.933 19 N -0.677 5.677 20 C 0.039 3.961 21 C 0.510 3.490 22 N -0.840 5.840 23 O -0.587 6.587 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.271 0.729 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.416 0.584 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.346 0.654 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.418 0.582 40 H 0.406 0.594 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.969 -29.826 8.438 33.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.355 5.355 14 C 0.008 3.992 15 C -0.159 4.159 16 C -0.096 4.096 17 C -0.138 4.138 18 C -0.042 4.042 19 N -0.309 5.309 20 C -0.093 4.093 21 C 0.296 3.704 22 N -0.404 5.404 23 O -0.466 6.466 24 C -0.159 4.159 25 C -0.155 4.155 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.250 0.750 40 H 0.237 0.763 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.500 -30.085 7.578 32.753 hybrid contribution 0.793 1.080 0.528 1.440 sum 11.293 -29.005 8.106 32.164 Atomic orbital electron populations 1.70175 1.07996 1.28667 1.47947 1.26122 0.95945 1.03303 0.93688 0.85008 0.77809 0.75692 0.79507 1.18676 1.20401 1.18613 1.23185 0.95367 0.92037 1.59005 0.89890 1.85578 1.10698 0.99265 1.97060 1.23390 1.03493 0.94489 1.06765 1.20115 0.86343 0.86789 0.74814 1.90680 1.17538 1.86122 1.50377 1.45786 1.10036 1.04808 1.74830 1.22613 0.99011 0.79150 0.98468 1.23173 1.02165 0.94416 0.96189 1.21935 0.98526 0.92100 0.97052 1.22824 0.95823 0.94075 1.01065 1.23035 0.97472 0.85673 0.98024 1.60330 1.51739 1.02151 1.16728 1.21966 1.04574 0.89254 0.93481 1.21037 0.74681 0.89666 0.85059 1.43743 1.75651 1.10903 1.10141 1.90754 1.51751 1.81985 1.22128 1.22994 0.97881 0.95379 0.99652 1.23154 0.99763 0.94027 0.98536 0.92001 0.87294 0.87160 0.74615 0.89624 0.88255 0.91852 0.89488 0.90587 0.89707 0.83415 0.86221 0.89909 0.75035 0.76303 0.91466 0.88998 0.90584 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.71 7.85 87.66 0.69 20.40 16 12 O -0.57 -26.63 15.46 -3.04 -0.05 -26.68 16 13 N -0.70 -17.45 5.35 -439.52 -2.35 -19.80 16 14 C 0.11 2.49 4.24 45.62 0.19 2.68 16 15 C -0.12 -2.12 7.64 30.88 0.24 -1.89 16 16 C -0.09 -1.33 1.11 -52.32 -0.06 -1.39 16 17 C -0.10 -1.19 7.64 30.89 0.24 -0.95 16 18 C 0.07 0.78 4.14 45.55 0.19 0.97 16 19 N -0.68 -8.96 6.18 -492.28 -3.04 -12.00 16 20 C 0.04 0.32 6.01 85.56 0.51 0.84 16 21 C 0.51 6.49 8.14 87.66 0.71 7.20 16 22 N -0.84 -3.61 8.87 -173.52 -1.54 -5.15 16 23 O -0.59 -13.91 17.04 -3.06 -0.05 -13.96 16 24 C -0.12 -1.69 7.41 30.88 0.23 -1.46 16 25 C -0.12 -1.78 7.59 30.88 0.23 -1.55 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 28 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 29 H 0.42 7.34 8.73 -92.71 -0.81 6.53 16 30 H 0.09 2.42 7.47 -2.38 -0.02 2.41 16 31 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.83 7.87 -2.38 -0.02 0.81 16 36 H 0.35 5.24 8.24 -89.69 -0.74 4.50 16 37 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.34 8.13 -2.39 -0.02 0.32 16 39 H 0.42 -1.09 8.83 -92.71 -0.82 -1.91 16 40 H 0.41 1.54 8.93 -92.71 -0.83 0.71 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 Total: -1.00 -84.85 384.34 -3.30 -88.15 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -2.14 Total: 18.83 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.72 Total: -9.31 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -6.65 Total: -92.84 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.10 Total: -40.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -84.85 -3.30 -88.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.202 kcal (2) G-P(sol) polarization free energy of solvation -84.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds