Wall clock time and date at job start Fri Apr 10 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 C 1.53000 * 109.46892 * 119.99818 * 2 1 3 5 5 H 1.09007 * 109.46902 * 185.00219 * 4 2 1 6 6 F 1.39898 * 109.47260 * 304.99760 * 4 2 1 7 7 C 1.50699 * 109.47316 * 65.00405 * 4 2 1 8 8 O 1.21274 * 119.99896 * 314.99760 * 7 4 2 9 9 N 1.34775 * 120.00048 * 135.00333 * 7 4 2 10 10 C 1.46500 * 119.99843 * 180.02562 * 9 7 4 11 11 H 1.08998 * 110.85497 * 328.77905 * 10 9 7 12 12 C 1.54619 * 110.97362 * 92.61643 * 10 9 7 13 13 C 1.51281 * 104.19775 * 142.91620 * 12 10 9 14 14 O 1.21283 * 124.94320 * 163.71594 * 13 12 10 15 15 N 1.34413 * 110.11648 * 343.74848 * 13 12 10 16 16 C 1.46501 * 124.35257 * 179.57609 * 15 13 12 17 17 C 1.53939 * 113.74114 * 38.75978 * 16 15 13 18 18 N 1.47819 * 86.03696 * 222.08948 * 17 16 15 19 19 C 1.36935 * 134.45692 * 204.65109 * 18 17 16 20 20 H 1.08003 * 120.00071 * 179.86304 * 19 18 17 21 21 C 1.38810 * 120.00346 * 359.86224 * 19 18 17 22 22 N 1.31624 * 119.99706 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00477 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 59.99234 * 23 21 19 25 25 H 1.48495 * 109.47611 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46996 * 299.99939 * 23 21 19 27 27 C 1.47580 * 91.05052 * 24.54989 * 18 17 16 28 28 C 1.46768 * 111.30156 * 359.58884 * 15 13 12 29 29 H 1.09002 * 109.47689 * 300.00186 * 1 2 3 30 30 H 1.09007 * 109.47008 * 60.00300 * 1 2 3 31 31 H 1.09005 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47689 * 239.99814 * 2 1 3 33 33 H 1.09002 * 109.47681 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47288 * 300.00086 * 3 2 1 35 35 H 1.08997 * 109.47339 * 59.99525 * 3 2 1 36 36 H 0.97003 * 120.00271 * 359.97438 * 9 7 4 37 37 H 1.09007 * 110.48907 * 261.59257 * 12 10 9 38 38 H 1.09005 * 110.49113 * 24.23733 * 12 10 9 39 39 H 1.09005 * 112.94588 * 170.35872 * 16 15 13 40 40 H 1.08995 * 113.77180 * 336.35103 * 17 16 15 41 41 H 1.09002 * 113.77031 * 107.75287 * 17 16 15 42 42 H 0.97002 * 119.99787 * 180.02562 * 22 21 19 43 43 H 1.09007 * 113.76867 * 221.15663 * 27 18 17 44 44 H 1.08996 * 113.76713 * 89.75683 * 27 18 17 45 45 H 1.09000 * 110.25007 * 258.01877 * 28 15 13 46 46 H 1.09004 * 110.24485 * 136.01583 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6413 -2.1733 1.1890 8 8 0.5143 -2.4796 0.8622 9 7 2.5372 -3.1314 1.4982 10 6 2.1498 -4.5431 1.4390 11 1 1.0933 -4.6658 1.6773 12 6 2.4802 -5.1501 0.0559 13 6 2.9337 -6.5592 0.3679 14 8 3.0170 -7.4576 -0.4426 15 7 3.2301 -6.6709 1.6741 16 6 3.6924 -7.9049 2.3143 17 6 4.6672 -8.7243 1.4494 18 7 3.9127 -9.9110 1.9050 19 6 4.2071 -11.2417 2.0381 20 1 3.4577 -11.9262 2.4074 21 6 5.4685 -11.7109 1.6983 22 7 6.3819 -10.8766 1.2487 23 14 5.8698 -13.5263 1.8791 24 1 4.9494 -14.3237 1.0293 25 1 7.2714 -13.7683 1.4525 26 1 5.7073 -13.9301 3.2989 27 6 2.7164 -9.0857 2.1612 28 6 3.0310 -5.3979 2.3768 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.4387 -2.8865 1.7593 37 1 1.5919 -5.1663 -0.5757 38 1 3.2815 -4.5893 -0.4254 39 1 4.0367 -7.7499 3.3369 40 1 4.5765 -8.5297 0.3808 41 1 5.6981 -8.6956 1.8023 42 1 7.2633 -11.2045 1.0109 43 1 2.1927 -9.3449 3.0814 44 1 2.0514 -8.9974 1.3022 45 1 3.9891 -4.9064 2.5459 46 1 2.5200 -5.5663 3.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108560074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:58 Heat of formation + Delta-G solvation = -52.768170 kcal Electronic energy + Delta-G solvation = -28229.452849 eV Core-core repulsion = 24070.853794 eV Total energy + Delta-G solvation = -4158.599055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.33099 -40.83370 -39.75656 -37.33814 -36.58449 -35.62676 -34.32085 -32.23733 -30.66465 -28.45887 -27.57669 -27.48162 -26.78258 -24.74616 -23.47713 -22.45251 -21.35743 -20.71840 -20.32390 -18.38626 -18.24431 -17.46170 -16.82896 -16.57075 -16.32459 -16.23013 -15.41104 -15.28450 -14.75559 -14.66447 -14.34169 -14.06589 -13.93969 -13.67870 -13.56801 -13.50842 -13.31921 -13.26027 -12.57296 -12.44710 -12.40611 -12.13201 -11.89854 -11.65733 -11.59536 -11.41879 -11.37180 -11.20082 -11.15311 -10.83688 -10.72716 -10.23306 -10.03044 -9.91100 -9.80770 -9.50155 -9.23229 -8.67646 -8.22598 -6.82699 -5.73020 -3.04932 1.94856 2.38713 2.87510 3.23097 3.42440 3.46716 3.47984 3.86577 3.96130 4.11191 4.20937 4.32746 4.40030 4.50888 4.72416 4.77814 4.79484 4.90166 5.07471 5.20724 5.29166 5.29628 5.33537 5.44875 5.49861 5.52756 5.61065 5.62895 5.62984 5.63905 5.80887 5.85123 5.93271 6.23801 6.27539 6.50337 6.55624 6.83423 6.89300 7.27322 7.44950 7.56822 7.60397 7.62792 8.00405 8.50322 9.07745 9.73923 10.62760 11.44265 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.039370 B = 0.002142 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.036658 B =13068.071087 C =13105.604664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.150 4.150 4 C 0.087 3.913 5 H 0.101 0.899 6 F -0.187 7.187 7 C 0.496 3.504 8 O -0.508 6.508 9 N -0.711 5.711 10 C 0.132 3.868 11 H 0.115 0.885 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.506 6.506 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.111 3.889 28 C 0.098 3.902 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.406 0.594 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.254 0.746 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 26.795 1.413 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.207 4.207 4 C 0.047 3.953 5 H 0.118 0.882 6 F -0.167 7.167 7 C 0.280 3.720 8 O -0.382 6.382 9 N -0.364 5.364 10 C 0.026 3.974 11 H 0.133 0.867 12 C -0.209 4.209 13 C 0.301 3.699 14 O -0.380 6.380 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.028 3.972 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.016 4.016 28 C -0.026 4.026 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.356 25.718 0.796 26.761 hybrid contribution 0.763 -0.765 0.264 1.112 sum -6.593 24.953 1.060 25.831 Atomic orbital electron populations 1.22127 0.93084 1.05368 1.01735 1.21569 0.98763 0.96901 0.95707 1.21862 1.00992 0.94892 1.02943 1.21632 0.99278 0.89302 0.85045 0.88164 1.92881 1.87564 1.84484 1.51808 1.21000 0.85671 0.87879 0.77470 1.90664 1.19725 1.82787 1.45004 1.46024 1.15422 1.05750 1.69189 1.21889 1.01078 0.79426 0.94969 0.86663 1.22832 1.04312 0.95390 0.98327 1.20566 0.77498 0.89515 0.82338 1.90801 1.52218 1.44228 1.50752 1.48512 1.66410 1.10270 1.08905 1.24105 0.98666 0.79632 0.98044 1.22783 0.95515 0.82091 0.96855 1.45701 1.08350 1.03671 1.75413 1.18943 0.96722 0.81763 1.37376 0.90220 1.24804 0.96299 0.98064 1.01334 1.69819 1.04437 1.33159 1.49310 0.86167 0.77203 0.84420 0.77766 1.21162 1.21559 1.21077 1.22928 0.91819 0.88813 0.98023 1.22210 0.99327 0.84975 0.96123 0.92429 0.92661 0.88815 0.89203 0.92329 0.91636 0.91887 0.75865 0.87772 0.87748 0.87595 0.92624 0.91140 0.93611 0.93898 0.94196 0.90811 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.71 37.15 0.32 -1.01 16 2 C -0.11 -0.69 2.75 -90.63 -0.25 -0.94 16 3 C -0.15 -0.73 9.11 37.16 0.34 -0.39 16 4 C 0.09 0.55 3.45 -27.88 -0.10 0.45 16 5 H 0.10 0.30 8.00 -51.93 -0.42 -0.11 16 6 F -0.19 -1.60 16.03 2.25 0.04 -1.56 16 7 C 0.50 4.11 7.17 -10.99 -0.08 4.03 16 8 O -0.51 -5.99 13.44 5.56 0.07 -5.92 16 9 N -0.71 -4.60 5.15 -52.23 -0.27 -4.87 16 10 C 0.13 1.16 3.53 -66.30 -0.23 0.93 16 11 H 0.12 1.14 7.54 -51.93 -0.39 0.75 16 12 C -0.17 -1.85 6.59 -26.75 -0.18 -2.03 16 13 C 0.51 8.46 7.42 -10.86 -0.08 8.37 16 14 O -0.51 -11.10 14.61 5.56 0.08 -11.02 16 15 N -0.61 -9.01 3.15 -166.63 -0.53 -9.53 16 16 C 0.10 1.84 4.81 -70.14 -0.34 1.50 16 17 C 0.15 3.79 6.90 -2.84 -0.02 3.77 16 18 N -0.60 -16.31 3.70 -177.87 -0.66 -16.97 16 19 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16 20 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -28.09 11.39 55.49 0.63 -27.46 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.11 2.42 8.44 -2.96 -0.03 2.40 16 28 C 0.10 0.92 7.08 -3.12 -0.02 0.90 16 29 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.96 5.25 -51.93 -0.27 0.69 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.34 7.94 -51.93 -0.41 -0.07 16 36 H 0.41 1.43 8.32 -40.82 -0.34 1.09 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 40 H 0.06 1.52 5.72 -51.93 -0.30 1.22 16 41 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.04 0.93 7.24 -51.93 -0.38 0.55 16 45 H 0.07 0.54 7.80 -51.93 -0.40 0.14 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -36.92 372.51 -7.98 -44.90 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.03 Total: -1.92 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -0.91 Total: 11.07 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.82 Total: -58.83 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.16 Total: -16.93 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.92 -7.98 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.867 kcal (2) G-P(sol) polarization free energy of solvation -36.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds