Wall clock time and date at job start Fri Apr 10 2020 14:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 C 1.53000 * 109.46892 * 119.99818 * 2 1 3 5 5 H 1.09007 * 109.46902 * 185.00219 * 4 2 1 6 6 F 1.39898 * 109.47260 * 304.99760 * 4 2 1 7 7 C 1.50699 * 109.47316 * 65.00405 * 4 2 1 8 8 O 1.21274 * 119.99896 * 314.99760 * 7 4 2 9 9 N 1.34775 * 120.00048 * 135.00333 * 7 4 2 10 10 C 1.46500 * 119.99843 * 180.02562 * 9 7 4 11 11 H 1.08998 * 110.85497 * 328.77905 * 10 9 7 12 12 C 1.54619 * 110.97362 * 92.61643 * 10 9 7 13 13 C 1.51281 * 104.19775 * 142.91620 * 12 10 9 14 14 O 1.21283 * 124.94320 * 163.71594 * 13 12 10 15 15 N 1.34413 * 110.11648 * 343.74848 * 13 12 10 16 16 C 1.46501 * 124.35257 * 179.57609 * 15 13 12 17 17 C 1.53939 * 113.74114 * 38.75978 * 16 15 13 18 18 N 1.47819 * 86.03696 * 222.08948 * 17 16 15 19 19 C 1.36935 * 134.45692 * 204.65109 * 18 17 16 20 20 H 1.08003 * 120.00071 * 179.86304 * 19 18 17 21 21 C 1.38810 * 120.00346 * 359.86224 * 19 18 17 22 22 N 1.31624 * 119.99706 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00477 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 59.99234 * 23 21 19 25 25 H 1.48495 * 109.47611 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46996 * 299.99939 * 23 21 19 27 27 C 1.47580 * 91.05052 * 24.54989 * 18 17 16 28 28 C 1.46768 * 111.30156 * 359.58884 * 15 13 12 29 29 H 1.09002 * 109.47689 * 300.00186 * 1 2 3 30 30 H 1.09007 * 109.47008 * 60.00300 * 1 2 3 31 31 H 1.09005 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47689 * 239.99814 * 2 1 3 33 33 H 1.09002 * 109.47681 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47288 * 300.00086 * 3 2 1 35 35 H 1.08997 * 109.47339 * 59.99525 * 3 2 1 36 36 H 0.97003 * 120.00271 * 359.97438 * 9 7 4 37 37 H 1.09007 * 110.48907 * 261.59257 * 12 10 9 38 38 H 1.09005 * 110.49113 * 24.23733 * 12 10 9 39 39 H 1.09005 * 112.94588 * 170.35872 * 16 15 13 40 40 H 1.08995 * 113.77180 * 336.35103 * 17 16 15 41 41 H 1.09002 * 113.77031 * 107.75287 * 17 16 15 42 42 H 0.97002 * 119.99787 * 180.02562 * 22 21 19 43 43 H 1.09007 * 113.76867 * 221.15663 * 27 18 17 44 44 H 1.08996 * 113.76713 * 89.75683 * 27 18 17 45 45 H 1.09000 * 110.25007 * 258.01877 * 28 15 13 46 46 H 1.09004 * 110.24485 * 136.01583 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2952 6 9 1.4821 -0.1314 2.3886 7 6 1.6413 -2.1733 1.1890 8 8 0.5143 -2.4796 0.8622 9 7 2.5372 -3.1314 1.4982 10 6 2.1498 -4.5431 1.4390 11 1 1.0933 -4.6658 1.6773 12 6 2.4802 -5.1501 0.0559 13 6 2.9337 -6.5592 0.3679 14 8 3.0170 -7.4576 -0.4426 15 7 3.2301 -6.6709 1.6741 16 6 3.6924 -7.9049 2.3143 17 6 4.6672 -8.7243 1.4494 18 7 3.9127 -9.9110 1.9050 19 6 4.2071 -11.2417 2.0381 20 1 3.4577 -11.9262 2.4074 21 6 5.4685 -11.7109 1.6983 22 7 6.3819 -10.8766 1.2487 23 14 5.8698 -13.5263 1.8791 24 1 4.9494 -14.3237 1.0293 25 1 7.2714 -13.7683 1.4525 26 1 5.7073 -13.9301 3.2989 27 6 2.7164 -9.0857 2.1612 28 6 3.0310 -5.3979 2.3768 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.4387 -2.8865 1.7593 37 1 1.5919 -5.1663 -0.5757 38 1 3.2815 -4.5893 -0.4254 39 1 4.0367 -7.7499 3.3369 40 1 4.5765 -8.5297 0.3808 41 1 5.6981 -8.6956 1.8023 42 1 7.2633 -11.2045 1.0109 43 1 2.1927 -9.3449 3.0814 44 1 2.0514 -8.9974 1.3022 45 1 3.9891 -4.9064 2.5459 46 1 2.5200 -5.5663 3.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108560074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:57 Heat of formation + Delta-G solvation = -79.859313 kcal Electronic energy + Delta-G solvation = -28230.627609 eV Core-core repulsion = 24070.853794 eV Total energy + Delta-G solvation = -4159.773815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.88649 -41.92285 -40.66360 -38.97385 -37.74318 -36.18683 -35.33967 -34.19461 -31.88417 -29.40477 -29.04428 -28.00818 -27.79233 -26.62555 -25.24813 -23.23236 -22.17544 -22.04173 -21.09578 -19.79977 -18.91783 -18.75554 -18.11515 -17.70280 -17.38195 -16.94657 -16.81923 -16.38157 -16.07437 -15.67592 -15.60899 -15.20991 -15.06036 -14.76912 -14.62256 -14.40700 -14.15675 -14.03084 -13.81862 -13.58523 -13.41911 -13.28639 -13.10987 -12.91032 -12.82622 -12.78853 -12.60414 -12.27754 -12.13780 -12.03545 -11.94745 -11.84561 -11.61336 -11.52230 -11.11249 -10.72158 -10.54198 -10.18362 -9.59095 -8.95547 -7.93546 -5.28189 1.31135 1.42589 1.47669 1.53599 1.58281 1.71209 2.06465 2.48000 3.22705 3.27184 3.38366 3.45547 3.46761 3.57470 3.75296 3.77033 3.84334 3.91759 4.00885 4.23399 4.30961 4.49223 4.51175 4.56669 4.61842 4.63813 4.73786 4.78926 4.83291 4.84885 4.90506 5.02918 5.07682 5.16723 5.19495 5.20849 5.28388 5.42123 5.46472 5.59619 5.82843 5.88500 6.23912 6.36231 6.87507 7.06838 7.21224 7.56194 8.51628 9.23537 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.039370 B = 0.002142 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.036658 B =13068.071087 C =13105.604664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.087 3.913 5 H 0.144 0.856 6 F -0.200 7.200 7 C 0.494 3.506 8 O -0.547 6.547 9 N -0.693 5.693 10 C 0.148 3.852 11 H 0.108 0.892 12 C -0.152 4.152 13 C 0.503 3.497 14 O -0.573 6.573 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.149 3.851 18 N -0.636 5.636 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.985 3.015 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.268 1.268 27 C 0.111 3.889 28 C 0.098 3.902 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.425 0.575 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.022 0.978 41 H 0.044 0.956 42 H 0.249 0.751 43 H 0.068 0.932 44 H 0.022 0.978 45 H 0.108 0.892 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 28.786 3.077 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.048 3.952 5 H 0.161 0.839 6 F -0.181 7.181 7 C 0.279 3.721 8 O -0.424 6.424 9 N -0.347 5.347 10 C 0.041 3.959 11 H 0.126 0.874 12 C -0.194 4.194 13 C 0.291 3.709 14 O -0.452 6.452 15 N -0.338 5.338 16 C 0.033 3.967 17 C 0.023 3.977 18 N -0.363 5.363 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.813 3.187 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.194 1.194 27 C -0.016 4.016 28 C -0.024 4.024 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.126 0.874 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.986 27.788 2.516 28.763 hybrid contribution 0.567 -1.326 -0.303 1.474 sum -6.419 26.462 2.213 27.319 Atomic orbital electron populations 1.22077 0.94919 1.03720 1.01568 1.21608 0.97246 0.98044 0.96184 1.21840 1.02101 0.93657 1.02740 1.21843 1.01508 0.87445 0.84381 0.83887 1.92858 1.88053 1.84564 1.52589 1.21437 0.85167 0.88910 0.76564 1.90674 1.21518 1.83484 1.46683 1.45817 1.16197 1.04296 1.68390 1.21592 1.00690 0.80556 0.93047 0.87427 1.22752 1.04613 0.92012 0.99978 1.21503 0.76350 0.90845 0.82197 1.90768 1.54884 1.46867 1.52659 1.48460 1.65302 1.11075 1.09010 1.23387 0.94837 0.80460 0.98006 1.22587 0.95438 0.83676 0.95959 1.46150 1.10788 1.03777 1.75564 1.19394 0.97029 0.83393 1.36904 0.89757 1.25740 0.96248 1.02717 1.01510 1.70030 1.04528 1.35045 1.50604 0.85059 0.76497 0.78829 0.78358 1.20812 1.21793 1.19369 1.23019 0.90991 0.89464 0.98098 1.22552 1.01480 0.82173 0.96200 0.93392 0.92054 0.91113 0.88385 0.90501 0.91369 0.92622 0.73605 0.88129 0.85646 0.84378 0.95979 0.93781 0.94175 0.91403 0.96040 0.87443 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.71 71.98 0.63 -1.93 16 2 C -0.11 -1.14 2.75 -10.80 -0.03 -1.17 16 3 C -0.15 -1.04 9.11 71.98 0.66 -0.39 16 4 C 0.09 0.83 3.45 29.85 0.10 0.93 16 5 H 0.14 0.15 8.00 -2.38 -0.02 0.13 16 6 F -0.20 -2.95 16.03 44.97 0.72 -2.23 16 7 C 0.49 6.87 7.17 87.66 0.63 7.50 16 8 O -0.55 -12.27 13.44 -3.01 -0.04 -12.31 16 9 N -0.69 -6.28 5.15 -437.55 -2.25 -8.54 16 10 C 0.15 2.15 3.53 46.05 0.16 2.31 16 11 H 0.11 1.87 7.54 -2.39 -0.02 1.85 16 12 C -0.15 -3.13 6.59 30.58 0.20 -2.92 16 13 C 0.50 16.45 7.42 87.90 0.65 17.10 16 14 O -0.57 -26.38 14.61 -3.04 -0.04 -26.43 16 15 N -0.61 -16.95 3.15 -799.68 -2.52 -19.47 16 16 C 0.14 4.99 4.81 46.75 0.22 5.21 16 17 C 0.15 7.64 6.90 86.44 0.60 8.24 16 18 N -0.64 -35.03 3.70 -716.67 -2.65 -37.69 16 19 C -0.24 -14.16 10.70 84.03 0.90 -13.26 16 20 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.95 -60.05 11.39 21.65 0.25 -59.80 16 23 Si 0.99 47.30 29.55 68.60 2.03 49.33 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.11 4.80 8.44 86.49 0.73 5.53 16 28 C 0.10 1.44 7.08 86.83 0.61 2.05 16 29 H 0.05 0.80 7.69 -2.39 -0.02 0.78 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.46 5.25 -2.38 -0.01 1.44 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.05 0.49 7.94 -2.39 -0.02 0.47 16 36 H 0.42 0.80 8.32 -92.71 -0.77 0.03 16 37 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.13 2.07 8.08 -2.38 -0.02 2.05 16 39 H 0.14 4.22 8.14 -2.38 -0.02 4.20 16 40 H 0.02 1.29 5.72 -2.39 -0.01 1.28 16 41 H 0.04 2.44 7.16 -2.39 -0.02 2.43 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.02 1.03 7.24 -2.39 -0.02 1.01 16 45 H 0.11 0.97 7.80 -2.39 -0.02 0.95 16 46 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -86.97 372.51 2.24 -84.73 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.23 Total: 6.87 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 6.53 Total: 25.53 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -7.18 Total: -125.50 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.08 Total: -38.73 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.72 Total: -2.23 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -86.97 2.24 -84.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108560074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.875 kcal (2) G-P(sol) polarization free energy of solvation -86.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds