Wall clock time and date at job start Fri Apr 10 2020 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 F 1.39905 * 109.47057 * 295.00065 * 3 2 1 6 6 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 7 7 O 1.21276 * 120.00057 * 44.99959 * 6 3 2 8 8 N 1.34774 * 119.99647 * 224.99823 * 6 3 2 9 9 C 1.46507 * 119.99919 * 179.97438 * 8 6 3 10 10 H 1.09003 * 110.54365 * 36.41291 * 9 8 6 11 11 C 1.54837 * 110.61180 * 273.54895 * 9 8 6 12 12 C 1.55846 * 103.51715 * 241.48784 * 11 9 8 13 13 H 1.08999 * 115.58090 * 158.88856 * 12 11 9 14 14 C 1.55846 * 105.03242 * 287.51722 * 12 11 9 15 15 C 1.54832 * 103.52307 * 71.72995 * 14 12 11 16 16 C 1.55842 * 110.61538 * 159.44478 * 9 8 6 17 17 H 1.09000 * 115.58376 * 318.86762 * 16 9 8 18 18 N 1.50655 * 101.02639 * 32.99456 * 12 11 9 19 19 C 1.46902 * 110.99926 * 62.34847 * 18 12 11 20 20 C 1.50697 * 109.47123 * 69.87608 * 19 18 12 21 21 O 1.21294 * 120.00095 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99835 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99897 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99813 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00085 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99963 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47456 * 89.99212 * 27 25 23 29 29 H 1.48502 * 109.47069 * 209.99711 * 27 25 23 30 30 H 1.48505 * 109.46647 * 329.99180 * 27 25 23 31 31 H 1.08990 * 109.47355 * 60.00352 * 1 2 3 32 32 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 34 34 H 1.08994 * 109.46895 * 239.99787 * 2 1 3 35 35 H 1.09000 * 109.47312 * 119.99621 * 2 1 3 36 36 H 0.96994 * 120.00782 * 0.02562 * 8 6 3 37 37 H 1.09000 * 110.61140 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.61240 * 122.82400 * 11 9 8 39 39 H 1.09007 * 110.61381 * 190.23506 * 14 12 11 40 40 H 1.08999 * 110.61513 * 313.21879 * 14 12 11 41 41 H 1.08995 * 110.61741 * 118.50238 * 15 14 12 42 42 H 1.08999 * 110.61406 * 241.49355 * 15 14 12 43 43 H 1.09002 * 109.46426 * 189.87653 * 19 18 12 44 44 H 1.09003 * 109.46801 * 309.87011 * 19 18 12 45 45 H 0.97001 * 119.99937 * 359.97438 * 22 20 19 46 46 H 0.96997 * 119.99574 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6698 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6812 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2956 1.0982 10 1 6.0709 2.1141 0.1288 11 6 6.0692 1.2385 2.1307 12 6 6.7859 2.0866 3.2242 13 1 6.8761 1.6140 4.2023 14 6 8.1255 2.5407 2.5702 15 6 7.6803 3.5957 1.5281 16 6 6.1056 3.6411 1.7059 17 1 5.6060 4.5375 1.3385 18 7 5.9771 3.3569 3.1798 19 6 4.5776 3.1030 3.5470 20 6 4.4952 2.7743 5.0153 21 8 5.5033 2.7530 5.6896 22 7 3.3015 2.5028 5.5792 23 6 3.2267 2.2032 6.9150 24 1 4.1243 2.1843 7.5153 25 6 1.9961 1.9229 7.4962 26 7 0.9039 1.9454 6.7656 27 14 1.8939 1.5154 9.3163 28 1 1.6967 2.7655 10.0932 29 1 0.7503 0.5986 9.5549 30 1 3.1537 0.8579 9.7477 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.6152 2.9043 1.5123 37 1 5.2122 0.7138 2.5528 38 1 6.7627 0.5330 1.6731 39 1 8.7830 2.9903 3.3144 40 1 8.6173 1.7007 2.0797 41 1 8.1168 4.5681 1.7558 42 1 7.9512 3.2786 0.5210 43 1 3.9808 3.9912 3.3394 44 1 4.1956 2.2644 2.9648 45 1 2.4954 2.5195 5.0399 46 1 0.0449 1.7501 7.1714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110898560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:41 Heat of formation + Delta-G solvation = -89.416440 kcal Electronic energy + Delta-G solvation = -29512.141391 eV Core-core repulsion = 25351.953147 eV Total energy + Delta-G solvation = -4160.188243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.04745 -41.36636 -39.21549 -37.86468 -34.54642 -34.14564 -33.99557 -32.00887 -31.18341 -29.75621 -29.25025 -27.40422 -26.44788 -24.24125 -22.92288 -21.68088 -20.90920 -20.41022 -19.92559 -18.89638 -18.01643 -17.76186 -17.11482 -16.51677 -16.27400 -15.68127 -15.50939 -15.17175 -14.87592 -14.51611 -14.25859 -14.22882 -13.87915 -13.83994 -13.42069 -13.08914 -12.91151 -12.49976 -12.34093 -12.25885 -12.06962 -12.01078 -11.85776 -11.53578 -11.44750 -11.36997 -11.28177 -11.17336 -11.07924 -10.98644 -10.65069 -10.43655 -10.37312 -10.26928 -9.81454 -9.55532 -9.24747 -8.61356 -8.16622 -8.01451 -6.47427 -3.87965 2.23436 2.75122 3.14053 3.23311 3.28623 3.77520 3.86077 4.15073 4.18652 4.28273 4.44459 4.54371 4.57147 4.66026 4.70459 4.97159 5.10499 5.14268 5.15837 5.21077 5.24451 5.26982 5.35445 5.46023 5.47963 5.49290 5.62144 5.69561 5.75924 5.78902 5.88190 5.93209 5.98952 6.03945 6.10687 6.16230 6.19682 6.33495 6.43533 6.77978 7.08744 7.16894 7.50192 7.86865 8.00311 8.55335 9.12817 9.47671 9.99397 10.70300 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.004687 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.883696 B = 5972.426997 C = 8579.237818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.081 3.919 4 H 0.103 0.897 5 F -0.191 7.191 6 C 0.493 3.507 7 O -0.521 6.521 8 N -0.716 5.716 9 C 0.110 3.890 10 H 0.097 0.903 11 C -0.165 4.165 12 C 0.060 3.940 13 H 0.128 0.872 14 C -0.117 4.117 15 C -0.107 4.107 16 C 0.033 3.967 17 H 0.119 0.881 18 N -0.462 5.462 19 C 0.005 3.995 20 C 0.446 3.554 21 O -0.577 6.577 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.406 0.594 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.390 0.610 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 0.316 -14.521 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.041 3.959 4 H 0.121 0.879 5 F -0.172 7.172 6 C 0.277 3.723 7 O -0.396 6.396 8 N -0.371 5.371 9 C 0.004 3.996 10 H 0.115 0.885 11 C -0.205 4.205 12 C -0.048 4.048 13 H 0.146 0.854 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.077 4.077 17 H 0.137 0.863 18 N -0.184 5.184 19 C -0.127 4.127 20 C 0.231 3.769 21 O -0.460 6.460 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.178 4.178 26 N -0.544 5.544 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.223 0.777 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.257 0.211 -14.101 14.731 hybrid contribution -1.464 -0.497 0.273 1.570 sum 2.793 -0.287 -13.828 14.110 Atomic orbital electron populations 1.21779 0.93947 1.02754 1.02672 1.21979 0.97521 0.93287 1.05012 1.21680 0.91835 0.96694 0.85658 0.87894 1.92873 1.92058 1.83939 1.48310 1.21058 0.90452 0.80946 0.79878 1.90712 1.66139 1.38907 1.43835 1.46644 1.08285 1.39534 1.42612 1.22968 0.79218 0.97056 1.00368 0.88455 1.23790 1.01618 0.98403 0.96705 1.24510 0.92836 0.89143 0.98335 0.85399 1.22622 0.96796 0.98209 0.97896 1.22945 0.92630 1.00201 0.98759 1.25338 0.97377 0.95680 0.89257 0.86312 1.67442 1.08258 1.28803 1.13857 1.22509 0.91531 1.01352 0.97339 1.19614 0.84627 0.84459 0.88176 1.90516 1.35050 1.56806 1.63637 1.41836 1.06990 1.61089 1.10151 1.19685 0.94865 1.43650 0.84581 0.87942 1.25239 0.94797 0.97453 1.00346 1.69598 0.98596 1.49503 1.36660 0.85872 0.77967 0.78393 0.82160 1.20376 1.20938 1.19438 0.92065 0.91682 0.91858 0.89635 0.89564 0.75615 0.90863 0.90337 0.90764 0.91400 0.90581 0.91236 0.89563 0.91442 0.77700 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.83 37.16 0.37 -1.04 16 2 C -0.14 -1.47 5.41 -26.73 -0.14 -1.61 16 3 C 0.08 0.89 3.77 -27.88 -0.11 0.79 16 4 H 0.10 0.91 7.99 -51.93 -0.42 0.49 16 5 F -0.19 -2.37 16.75 2.25 0.04 -2.33 16 6 C 0.49 6.42 7.17 -10.99 -0.08 6.34 16 7 O -0.52 -8.44 16.32 5.56 0.09 -8.35 16 8 N -0.72 -8.35 3.87 -51.40 -0.20 -8.55 16 9 C 0.11 1.32 2.52 -65.44 -0.17 1.16 16 10 H 0.10 1.21 7.38 -51.93 -0.38 0.83 16 11 C -0.17 -2.24 5.49 -24.24 -0.13 -2.37 16 12 C 0.06 0.90 4.22 -62.56 -0.26 0.63 16 13 H 0.13 2.32 6.93 -51.93 -0.36 1.96 16 14 C -0.12 -1.39 6.44 -24.25 -0.16 -1.55 16 15 C -0.11 -1.11 6.54 -22.71 -0.15 -1.26 16 16 C 0.03 0.38 4.76 -61.02 -0.29 0.09 16 17 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 18 N -0.46 -7.09 5.32 -205.27 -1.09 -8.18 16 19 C 0.00 0.08 4.01 -4.98 -0.02 0.06 16 20 C 0.45 9.96 7.58 -10.99 -0.08 9.88 16 21 O -0.58 -14.94 14.44 5.55 0.08 -14.86 16 22 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 23 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 24 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 25 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 26 N -0.90 -23.57 13.05 55.50 0.72 -22.84 16 27 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 31 H 0.06 0.55 7.93 -51.93 -0.41 0.13 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.41 4.18 6.15 -40.82 -0.25 3.93 16 37 H 0.07 1.12 7.05 -51.93 -0.37 0.76 16 38 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.70 7.81 -51.93 -0.41 0.29 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 43 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 44 H 0.07 1.00 3.53 -51.93 -0.18 0.82 16 45 H 0.39 8.84 7.90 -40.82 -0.32 8.52 16 46 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -31.87 367.54 -8.16 -40.03 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.79 Total: 14.14 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.46 Total: 3.46 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.62 Total: -53.16 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.87 -8.16 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110898560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.388 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds