Wall clock time and date at job start Fri Apr 10 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 F 1.39905 * 109.47057 * 295.00065 * 3 2 1 6 6 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 7 7 O 1.21276 * 120.00057 * 44.99959 * 6 3 2 8 8 N 1.34774 * 119.99647 * 224.99823 * 6 3 2 9 9 C 1.46507 * 119.99919 * 179.97438 * 8 6 3 10 10 H 1.09003 * 110.54365 * 36.41291 * 9 8 6 11 11 C 1.54837 * 110.61180 * 273.54895 * 9 8 6 12 12 C 1.55846 * 103.51715 * 241.48784 * 11 9 8 13 13 H 1.08999 * 115.58090 * 158.88856 * 12 11 9 14 14 C 1.55846 * 105.03242 * 287.51722 * 12 11 9 15 15 C 1.54832 * 103.52307 * 71.72995 * 14 12 11 16 16 C 1.55842 * 110.61538 * 159.44478 * 9 8 6 17 17 H 1.09000 * 115.58376 * 318.86762 * 16 9 8 18 18 N 1.50655 * 101.02639 * 32.99456 * 12 11 9 19 19 C 1.46902 * 110.99926 * 62.34847 * 18 12 11 20 20 C 1.50697 * 109.47123 * 69.87608 * 19 18 12 21 21 O 1.21294 * 120.00095 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99835 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99897 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99813 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00085 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99963 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47456 * 89.99212 * 27 25 23 29 29 H 1.48502 * 109.47069 * 209.99711 * 27 25 23 30 30 H 1.48505 * 109.46647 * 329.99180 * 27 25 23 31 31 H 1.08990 * 109.47355 * 60.00352 * 1 2 3 32 32 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 34 34 H 1.08994 * 109.46895 * 239.99787 * 2 1 3 35 35 H 1.09000 * 109.47312 * 119.99621 * 2 1 3 36 36 H 0.96994 * 120.00782 * 0.02562 * 8 6 3 37 37 H 1.09000 * 110.61140 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.61240 * 122.82400 * 11 9 8 39 39 H 1.09007 * 110.61381 * 190.23506 * 14 12 11 40 40 H 1.08999 * 110.61513 * 313.21879 * 14 12 11 41 41 H 1.08995 * 110.61741 * 118.50238 * 15 14 12 42 42 H 1.08999 * 110.61406 * 241.49355 * 15 14 12 43 43 H 1.09002 * 109.46426 * 189.87653 * 19 18 12 44 44 H 1.09003 * 109.46801 * 309.87011 * 19 18 12 45 45 H 0.97001 * 119.99937 * 359.97438 * 22 20 19 46 46 H 0.96997 * 119.99574 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6698 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6812 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2956 1.0982 10 1 6.0709 2.1141 0.1288 11 6 6.0692 1.2385 2.1307 12 6 6.7859 2.0866 3.2242 13 1 6.8761 1.6140 4.2023 14 6 8.1255 2.5407 2.5702 15 6 7.6803 3.5957 1.5281 16 6 6.1056 3.6411 1.7059 17 1 5.6060 4.5375 1.3385 18 7 5.9771 3.3569 3.1798 19 6 4.5776 3.1030 3.5470 20 6 4.4952 2.7743 5.0153 21 8 5.5033 2.7530 5.6896 22 7 3.3015 2.5028 5.5792 23 6 3.2267 2.2032 6.9150 24 1 4.1243 2.1843 7.5153 25 6 1.9961 1.9229 7.4962 26 7 0.9039 1.9454 6.7656 27 14 1.8939 1.5154 9.3163 28 1 1.6967 2.7655 10.0932 29 1 0.7503 0.5986 9.5549 30 1 3.1537 0.8579 9.7477 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.6152 2.9043 1.5123 37 1 5.2122 0.7138 2.5528 38 1 6.7627 0.5330 1.6731 39 1 8.7830 2.9903 3.3144 40 1 8.6173 1.7007 2.0797 41 1 8.1168 4.5681 1.7558 42 1 7.9512 3.2786 0.5210 43 1 3.9808 3.9912 3.3394 44 1 4.1956 2.2644 2.9648 45 1 2.4954 2.5195 5.0399 46 1 0.0449 1.7501 7.1714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110898560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:40 Heat of formation + Delta-G solvation = -112.391528 kcal Electronic energy + Delta-G solvation = -29513.137665 eV Core-core repulsion = 25351.953147 eV Total energy + Delta-G solvation = -4161.184518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.97136 -42.46727 -40.34795 -39.61133 -35.96790 -35.55892 -34.97395 -33.45293 -32.93918 -30.77725 -30.25056 -28.45177 -27.85134 -25.94629 -23.83456 -22.57645 -21.96074 -21.76424 -20.96673 -20.46227 -19.74880 -18.89938 -18.07480 -17.69638 -17.39118 -17.12565 -16.56784 -16.48967 -16.22494 -16.01885 -15.65353 -15.35357 -15.21664 -14.86722 -14.67337 -14.39276 -13.96722 -13.73079 -13.54713 -13.33171 -13.27673 -13.17289 -13.02473 -12.91785 -12.82213 -12.56757 -12.40537 -12.35331 -12.12931 -12.09355 -12.05516 -11.89315 -11.72087 -11.46972 -11.35798 -10.83387 -10.33544 -10.27211 -9.98696 -9.49249 -8.45831 -5.93248 1.21041 1.37638 1.42164 1.53500 1.79210 2.06891 2.28324 2.69142 3.20346 3.24474 3.26005 3.42907 3.56574 3.62464 3.65186 3.73867 3.86953 4.05601 4.11293 4.16552 4.27664 4.35849 4.37673 4.45028 4.47319 4.49148 4.52650 4.67833 4.69811 4.72944 4.89777 5.01010 5.04186 5.09545 5.13717 5.24202 5.30458 5.31265 5.35679 5.42355 5.69676 5.84592 6.07144 6.19130 6.62079 6.88234 7.14889 7.57807 8.14315 8.71278 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.004687 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.883696 B = 5972.426997 C = 8579.237818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.081 3.919 4 H 0.130 0.870 5 F -0.197 7.197 6 C 0.492 3.508 7 O -0.556 6.556 8 N -0.708 5.708 9 C 0.116 3.884 10 H 0.103 0.897 11 C -0.158 4.158 12 C 0.049 3.951 13 H 0.085 0.915 14 C -0.112 4.112 15 C -0.100 4.100 16 C 0.042 3.958 17 H 0.144 0.856 18 N -0.483 5.483 19 C 0.019 3.981 20 C 0.442 3.558 21 O -0.617 6.617 22 N -0.572 5.572 23 C -0.331 4.331 24 H 0.075 0.925 25 C -0.009 4.009 26 N -0.916 5.916 27 Si 0.987 3.013 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.276 1.276 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 1.184 -15.795 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.042 3.958 4 H 0.147 0.853 5 F -0.178 7.178 6 C 0.277 3.723 7 O -0.433 6.433 8 N -0.363 5.363 9 C 0.010 3.990 10 H 0.121 0.879 11 C -0.198 4.198 12 C -0.059 4.059 13 H 0.103 0.897 14 C -0.150 4.150 15 C -0.138 4.138 16 C -0.066 4.066 17 H 0.161 0.839 18 N -0.206 5.206 19 C -0.113 4.113 20 C 0.230 3.770 21 O -0.503 6.503 22 N -0.209 5.209 23 C -0.461 4.461 24 H 0.093 0.907 25 C -0.209 4.209 26 N -0.557 5.557 27 Si 0.811 3.189 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.201 1.201 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.253 0.747 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.699 1.102 -15.388 15.865 hybrid contribution -1.235 -0.785 0.677 1.612 sum 2.464 0.318 -14.711 14.919 Atomic orbital electron populations 1.21766 0.92712 1.03410 1.02927 1.21980 0.98547 0.92940 1.04362 1.21810 0.90515 0.97319 0.86155 0.85264 1.92860 1.91980 1.84059 1.48937 1.21424 0.91239 0.80328 0.79342 1.90696 1.67052 1.40285 1.45286 1.46595 1.08296 1.39201 1.42183 1.22915 0.79434 0.96750 0.99911 0.87937 1.23700 1.00788 0.98701 0.96628 1.24356 0.95108 0.89473 0.97003 0.89681 1.22604 0.94941 0.99360 0.98100 1.22982 0.91363 1.00062 0.99377 1.25508 0.98676 0.96097 0.86344 0.83857 1.67433 1.07319 1.28979 1.16859 1.22395 0.93169 1.03049 0.92691 1.20698 0.83375 0.82380 0.90577 1.90492 1.36318 1.57966 1.65499 1.41868 1.07864 1.61746 1.09465 1.19588 0.94498 1.45913 0.86055 0.90668 1.25918 0.94181 0.96788 1.04002 1.69643 0.98872 1.49262 1.37948 0.85015 0.77850 0.78399 0.77621 1.19739 1.19582 1.20093 0.91880 0.90914 0.91458 0.90722 0.89837 0.74652 0.93192 0.89522 0.91673 0.89678 0.89715 0.88778 0.86826 0.89902 0.77007 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.83 71.98 0.71 -1.80 16 2 C -0.14 -2.80 5.41 30.59 0.17 -2.63 16 3 C 0.08 1.65 3.77 29.85 0.11 1.76 16 4 H 0.13 1.94 7.99 -2.39 -0.02 1.92 16 5 F -0.20 -4.55 16.75 44.97 0.75 -3.80 16 6 C 0.49 12.06 7.17 87.66 0.63 12.68 16 7 O -0.56 -17.47 16.32 -3.02 -0.05 -17.52 16 8 N -0.71 -14.97 3.87 -434.93 -1.68 -16.65 16 9 C 0.12 2.53 2.52 46.60 0.12 2.65 16 10 H 0.10 2.25 7.38 -2.39 -0.02 2.24 16 11 C -0.16 -4.19 5.49 32.21 0.18 -4.01 16 12 C 0.05 1.48 4.22 46.14 0.19 1.67 16 13 H 0.09 3.29 6.93 -2.39 -0.02 3.27 16 14 C -0.11 -2.51 6.44 32.20 0.21 -2.30 16 15 C -0.10 -1.76 6.54 33.20 0.22 -1.54 16 16 C 0.04 0.86 4.76 47.14 0.22 1.09 16 17 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 18 N -0.48 -14.30 5.32 -803.34 -4.27 -18.57 16 19 C 0.02 0.59 4.01 85.56 0.34 0.94 16 20 C 0.44 20.16 7.58 87.66 0.66 20.82 16 21 O -0.62 -33.27 14.44 -3.07 -0.04 -33.32 16 22 N -0.57 -27.95 5.29 -306.98 -1.62 -29.57 16 23 C -0.33 -18.27 9.68 84.04 0.81 -17.45 16 24 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 25 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 26 N -0.92 -47.37 13.05 21.66 0.28 -47.08 16 27 Si 0.99 42.09 29.55 68.60 2.03 44.11 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 30 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 31 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 7.37 6.15 -92.71 -0.57 6.80 16 37 H 0.05 1.54 7.05 -2.39 -0.02 1.52 16 38 H 0.09 2.12 7.81 -2.39 -0.02 2.11 16 39 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.08 1.59 7.81 -2.39 -0.02 1.58 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.27 7.85 -2.39 -0.02 1.25 16 43 H 0.11 2.97 8.00 -2.39 -0.02 2.95 16 44 H 0.08 2.36 3.53 -2.39 -0.01 2.35 16 45 H 0.40 18.01 7.90 -92.71 -0.73 17.28 16 46 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -70.69 367.54 0.15 -70.54 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.28 Total: 39.98 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.04 Total: 11.88 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -7.30 Total: -111.88 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.09 Total: -50.84 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.69 0.15 -70.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110898560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.848 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds