Wall clock time and date at job start Fri Apr 10 2020 14:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46608 * 2 1 4 4 H 1.08998 * 109.47013 * 55.00336 * 3 2 1 5 5 F 1.39899 * 109.47450 * 294.99598 * 3 2 1 6 6 C 1.50702 * 109.46821 * 174.99914 * 3 2 1 7 7 O 1.21283 * 120.00262 * 45.00294 * 6 3 2 8 8 N 1.34777 * 119.99928 * 224.72200 * 6 3 2 9 9 C 1.47290 * 135.91623 * 359.91327 * 8 6 3 10 10 C 1.52533 * 87.57770 * 153.99369 * 9 8 6 11 11 C 1.47300 * 135.91834 * 180.27565 * 8 6 3 12 12 C 1.53131 * 116.54428 * 268.65507 * 10 9 8 13 13 C 1.54688 * 104.56264 * 228.35494 * 12 10 9 14 14 N 1.48658 * 104.66173 * 23.67575 * 13 12 10 15 15 C 1.46903 * 111.00043 * 201.53283 * 14 13 12 16 16 C 1.50695 * 109.47262 * 290.12547 * 15 14 13 17 17 O 1.21297 * 120.00084 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00197 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00140 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00445 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46700 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47304 * 119.99703 * 23 21 19 26 26 H 1.48499 * 109.47400 * 240.00019 * 23 21 19 27 27 C 1.48844 * 104.43813 * 321.21646 * 14 13 12 28 28 H 1.09005 * 109.46592 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47134 * 299.99674 * 1 2 3 30 30 H 1.08998 * 109.47463 * 60.00410 * 1 2 3 31 31 H 1.08995 * 109.47134 * 240.00326 * 2 1 3 32 32 H 1.08998 * 109.47463 * 119.99590 * 2 1 3 33 33 H 1.09003 * 113.51792 * 268.64948 * 9 8 6 34 34 H 1.08997 * 113.52274 * 39.24717 * 9 8 6 35 35 H 1.09009 * 113.51715 * 320.75003 * 11 8 6 36 36 H 1.08996 * 113.52136 * 91.28267 * 11 8 6 37 37 H 1.08997 * 110.41883 * 347.12166 * 12 10 9 38 38 H 1.08997 * 110.42126 * 109.58423 * 12 10 9 39 39 H 1.09004 * 110.39966 * 142.47416 * 13 12 10 40 40 H 1.09007 * 110.39837 * 264.76742 * 13 12 10 41 41 H 1.09001 * 109.46915 * 50.13180 * 15 14 13 42 42 H 1.09000 * 109.47201 * 170.12462 * 15 14 13 43 43 H 0.97001 * 119.99684 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00105 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.47068 * 279.67639 * 27 14 13 46 46 H 1.08991 * 110.47450 * 157.06568 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 9 1.6698 2.0681 -1.1954 6 6 3.5418 1.4444 0.1239 7 8 4.2064 0.6813 -0.5446 8 7 4.1468 2.2981 0.9733 9 6 3.7083 3.3426 1.9147 10 6 4.9919 3.0852 2.6975 11 6 5.5358 2.5984 1.3610 12 6 4.9127 2.0456 3.8190 13 6 5.5731 2.7353 5.0360 14 7 5.4366 4.1904 4.7637 15 6 6.4250 4.9638 5.5271 16 6 6.0727 4.9225 6.9917 17 8 5.0946 4.3087 7.3632 18 7 6.8449 5.5668 7.8891 19 6 6.5246 5.5288 9.2215 20 1 5.6533 4.9830 9.5522 21 6 7.3204 6.1934 10.1466 22 7 8.3803 6.8580 9.7442 23 14 6.8837 6.1423 11.9621 24 1 5.6535 5.3328 12.1526 25 1 8.0019 5.5292 12.7231 26 1 6.6491 7.5237 12.4539 27 6 5.6746 4.3179 3.2999 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.6617 4.3369 1.4704 34 1 2.8031 3.0818 2.4630 35 1 6.1654 1.7125 1.4444 36 1 5.9935 3.3867 0.7634 37 1 3.8733 1.8012 4.0383 38 1 5.4658 1.1473 3.5447 39 1 5.0487 2.4697 5.9540 40 1 6.6247 2.4571 5.1060 41 1 7.4156 4.5338 5.3794 42 1 6.4227 5.9977 5.1819 43 1 7.6276 6.0567 7.5921 44 1 8.9361 7.3217 10.3900 45 1 6.7431 4.3052 3.0849 46 1 5.2187 5.2311 2.9177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148059902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:22 Heat of formation + Delta-G solvation = -75.191909 kcal Electronic energy + Delta-G solvation = -27805.245344 eV Core-core repulsion = 23645.673922 eV Total energy + Delta-G solvation = -4159.571422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.24073 -41.30473 -39.09646 -38.20664 -36.50104 -34.36786 -33.90993 -31.80589 -31.17501 -29.88338 -28.33359 -27.09179 -26.45561 -25.21102 -23.97048 -22.27383 -21.41730 -20.11281 -19.36451 -18.74820 -17.93803 -17.82578 -17.20615 -16.50954 -16.23465 -15.84899 -15.53011 -15.33340 -15.06415 -14.55639 -14.46520 -14.33255 -13.97742 -13.83028 -13.76850 -13.37327 -13.19607 -13.11069 -12.70314 -12.46869 -12.34532 -12.25223 -11.92015 -11.66014 -11.52470 -11.51854 -11.37978 -11.29617 -11.21082 -11.15293 -10.87370 -10.54070 -10.36148 -10.24712 -10.02156 -9.52520 -9.11702 -8.55669 -8.07834 -7.97209 -6.43908 -3.84641 2.03297 2.29438 3.14500 3.25304 3.32152 3.65160 3.81294 3.88361 4.04178 4.07434 4.22274 4.23372 4.30835 4.48028 4.63527 4.75326 4.86593 4.98420 5.01285 5.05844 5.13119 5.19797 5.21830 5.24305 5.27447 5.33168 5.43076 5.50373 5.54438 5.58795 5.66280 5.71949 5.76552 5.79256 5.81092 5.88576 6.07784 6.23865 6.37709 7.02147 7.12957 7.24900 7.53319 7.62157 8.04128 8.59456 9.16223 9.52326 10.03944 10.73910 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.002046 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.513947 B =13683.331104 C =14154.541278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.088 3.912 4 H 0.100 0.900 5 F -0.190 7.190 6 C 0.521 3.479 7 O -0.525 6.525 8 N -0.640 5.640 9 C 0.113 3.887 10 C -0.096 4.096 11 C 0.116 3.884 12 C -0.096 4.096 13 C 0.038 3.962 14 N -0.483 5.483 15 C 0.034 3.966 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.047 3.953 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.052 0.948 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -7.844 -18.506 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.049 3.951 4 H 0.118 0.882 5 F -0.171 7.171 6 C 0.308 3.692 7 O -0.400 6.400 8 N -0.375 5.375 9 C -0.010 4.010 10 C -0.098 4.098 11 C -0.007 4.007 12 C -0.134 4.134 13 C -0.090 4.090 14 N -0.207 5.207 15 C -0.098 4.098 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.082 4.082 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.169 -8.496 -18.516 22.341 hybrid contribution 1.288 0.337 0.434 1.400 sum -7.882 -8.159 -18.082 21.346 Atomic orbital electron populations 1.21776 0.93933 1.02768 1.02612 1.21997 0.97450 0.93343 1.05072 1.21554 0.91520 0.96440 0.85593 0.88179 1.92880 1.91945 1.83962 1.48266 1.20534 0.90043 0.80249 0.78356 1.90738 1.66260 1.39902 1.43111 1.49798 1.10642 1.35843 1.41240 1.23205 0.98755 0.91436 0.87571 1.22119 0.96290 0.97464 0.93886 1.23013 0.84724 1.00530 0.92384 1.22009 1.02203 0.96296 0.92865 1.23247 0.99137 0.87419 0.99182 1.65212 1.46414 1.07089 1.01957 1.22068 0.93517 0.99480 0.94702 1.19682 0.85997 0.84822 0.86497 1.90505 1.28971 1.46479 1.80232 1.41870 1.25634 1.45989 1.06726 1.19734 1.11134 1.30358 0.81461 0.87872 1.25265 0.95643 0.96496 1.00632 1.69618 1.15643 1.33523 1.35560 0.85806 0.78569 0.78011 0.81995 1.19226 1.20800 1.20750 1.22888 0.98714 0.96840 0.89784 0.91586 0.92162 0.91914 0.89479 0.89678 0.88746 0.89473 0.89918 0.89156 0.90431 0.91028 0.88036 0.94220 0.93161 0.89197 0.77520 0.91935 0.92997 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.83 37.16 0.37 -0.58 16 2 C -0.14 -1.10 5.41 -26.73 -0.14 -1.24 16 3 C 0.09 0.79 3.72 -27.88 -0.10 0.69 16 4 H 0.10 0.67 7.38 -51.93 -0.38 0.28 16 5 F -0.19 -2.05 16.75 2.25 0.04 -2.02 16 6 C 0.52 6.02 7.42 -10.98 -0.08 5.94 16 7 O -0.52 -7.97 17.38 5.55 0.10 -7.87 16 8 N -0.64 -6.28 3.68 -185.17 -0.68 -6.96 16 9 C 0.11 0.90 7.37 -7.65 -0.06 0.84 16 10 C -0.10 -0.88 1.29 -154.93 -0.20 -1.08 16 11 C 0.12 1.03 7.92 -7.78 -0.06 0.97 16 12 C -0.10 -1.02 6.53 -25.78 -0.17 -1.19 16 13 C 0.04 0.54 5.82 -1.96 -0.01 0.53 16 14 N -0.48 -7.13 5.06 -231.60 -1.17 -8.31 16 15 C 0.03 0.56 5.30 -4.98 -0.03 0.54 16 16 C 0.44 10.04 7.59 -10.99 -0.08 9.96 16 17 O -0.58 -14.96 14.43 5.54 0.08 -14.88 16 18 N -0.57 -13.90 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.05 0.48 5.95 -2.61 -0.02 0.46 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 7.94 -51.93 -0.41 -0.01 16 31 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 34 H 0.09 0.63 7.68 -51.93 -0.40 0.23 16 35 H 0.08 0.77 7.93 -51.92 -0.41 0.36 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.81 7.85 -51.93 -0.41 0.41 16 38 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 39 H 0.10 1.77 6.93 -51.93 -0.36 1.41 16 40 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 41 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 42 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 43 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.05 0.49 7.98 -51.93 -0.41 0.08 16 46 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -33.14 381.00 -8.28 -41.42 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.20 Total: 6.51 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.83 Total: 8.05 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -1.19 Total: -52.63 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.76 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.14 -8.28 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148059902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.775 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds