Wall clock time and date at job start Fri Apr 10 2020 14:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46608 * 2 1 4 4 H 1.08998 * 109.47013 * 55.00336 * 3 2 1 5 5 F 1.39899 * 109.47450 * 294.99598 * 3 2 1 6 6 C 1.50702 * 109.46821 * 174.99914 * 3 2 1 7 7 O 1.21283 * 120.00262 * 45.00294 * 6 3 2 8 8 N 1.34777 * 119.99928 * 224.72200 * 6 3 2 9 9 C 1.47290 * 135.91623 * 359.91327 * 8 6 3 10 10 C 1.52533 * 87.57770 * 153.99369 * 9 8 6 11 11 C 1.47300 * 135.91834 * 180.27565 * 8 6 3 12 12 C 1.53131 * 116.54428 * 268.65507 * 10 9 8 13 13 C 1.54688 * 104.56264 * 228.35494 * 12 10 9 14 14 N 1.48658 * 104.66173 * 23.67575 * 13 12 10 15 15 C 1.46903 * 111.00043 * 201.53283 * 14 13 12 16 16 C 1.50695 * 109.47262 * 290.12547 * 15 14 13 17 17 O 1.21297 * 120.00084 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00197 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00140 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00278 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00445 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46700 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47304 * 119.99703 * 23 21 19 26 26 H 1.48499 * 109.47400 * 240.00019 * 23 21 19 27 27 C 1.48844 * 104.43813 * 321.21646 * 14 13 12 28 28 H 1.09005 * 109.46592 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47134 * 299.99674 * 1 2 3 30 30 H 1.08998 * 109.47463 * 60.00410 * 1 2 3 31 31 H 1.08995 * 109.47134 * 240.00326 * 2 1 3 32 32 H 1.08998 * 109.47463 * 119.99590 * 2 1 3 33 33 H 1.09003 * 113.51792 * 268.64948 * 9 8 6 34 34 H 1.08997 * 113.52274 * 39.24717 * 9 8 6 35 35 H 1.09009 * 113.51715 * 320.75003 * 11 8 6 36 36 H 1.08996 * 113.52136 * 91.28267 * 11 8 6 37 37 H 1.08997 * 110.41883 * 347.12166 * 12 10 9 38 38 H 1.08997 * 110.42126 * 109.58423 * 12 10 9 39 39 H 1.09004 * 110.39966 * 142.47416 * 13 12 10 40 40 H 1.09007 * 110.39837 * 264.76742 * 13 12 10 41 41 H 1.09001 * 109.46915 * 50.13180 * 15 14 13 42 42 H 1.09000 * 109.47201 * 170.12462 * 15 14 13 43 43 H 0.97001 * 119.99684 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00105 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.47068 * 279.67639 * 27 14 13 46 46 H 1.08991 * 110.47450 * 157.06568 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 9 1.6698 2.0681 -1.1954 6 6 3.5418 1.4444 0.1239 7 8 4.2064 0.6813 -0.5446 8 7 4.1468 2.2981 0.9733 9 6 3.7083 3.3426 1.9147 10 6 4.9919 3.0852 2.6975 11 6 5.5358 2.5984 1.3610 12 6 4.9127 2.0456 3.8190 13 6 5.5731 2.7353 5.0360 14 7 5.4366 4.1904 4.7637 15 6 6.4250 4.9638 5.5271 16 6 6.0727 4.9225 6.9917 17 8 5.0946 4.3087 7.3632 18 7 6.8449 5.5668 7.8891 19 6 6.5246 5.5288 9.2215 20 1 5.6533 4.9830 9.5522 21 6 7.3204 6.1934 10.1466 22 7 8.3803 6.8580 9.7442 23 14 6.8837 6.1423 11.9621 24 1 5.6535 5.3328 12.1526 25 1 8.0019 5.5292 12.7231 26 1 6.6491 7.5237 12.4539 27 6 5.6746 4.3179 3.2999 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.6617 4.3369 1.4704 34 1 2.8031 3.0818 2.4630 35 1 6.1654 1.7125 1.4444 36 1 5.9935 3.3867 0.7634 37 1 3.8733 1.8012 4.0383 38 1 5.4658 1.1473 3.5447 39 1 5.0487 2.4697 5.9540 40 1 6.6247 2.4571 5.1060 41 1 7.4156 4.5338 5.3794 42 1 6.4227 5.9977 5.1819 43 1 7.6276 6.0567 7.5921 44 1 8.9361 7.3217 10.3900 45 1 6.7431 4.3052 3.0849 46 1 5.2187 5.2311 2.9177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148059902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:21 Heat of formation + Delta-G solvation = -99.164694 kcal Electronic energy + Delta-G solvation = -27806.284881 eV Core-core repulsion = 23645.673922 eV Total energy + Delta-G solvation = -4160.610959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.00597 -42.11030 -40.33103 -39.59955 -37.66274 -35.85876 -34.99148 -33.31332 -32.68414 -30.80787 -29.22061 -28.23154 -27.14173 -26.57292 -25.30838 -22.91612 -22.54236 -21.03952 -20.85292 -19.91741 -19.53615 -18.65532 -18.01134 -17.69753 -17.30520 -16.88592 -16.52666 -16.39401 -16.18915 -16.10295 -15.78964 -15.53421 -15.11894 -14.83564 -14.64030 -14.44484 -14.34780 -13.93914 -13.67879 -13.53358 -13.41757 -13.35361 -12.96599 -12.93845 -12.84852 -12.54668 -12.38251 -12.31780 -12.23147 -12.10435 -12.07196 -11.97399 -11.88869 -11.46166 -11.33034 -10.87240 -10.26479 -9.97639 -9.89494 -9.31162 -8.44479 -5.92403 1.19599 1.37665 1.42930 1.54834 1.56709 2.09991 2.30107 2.79082 2.99932 3.21237 3.22738 3.39498 3.43260 3.60818 3.61925 3.74983 3.85152 3.94039 4.24654 4.27553 4.34843 4.39422 4.44357 4.46527 4.51865 4.56492 4.57740 4.64542 4.67976 4.73215 4.74918 4.85123 4.92020 4.97774 5.00432 5.10260 5.16786 5.23110 5.31002 5.43561 5.88240 5.95853 6.12380 6.47532 6.63984 6.79194 7.16463 7.60766 8.16809 8.73162 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.002046 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.513947 B =13683.331104 C =14154.541278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.089 3.911 4 H 0.129 0.871 5 F -0.201 7.201 6 C 0.515 3.485 7 O -0.571 6.571 8 N -0.640 5.640 9 C 0.115 3.885 10 C -0.089 4.089 11 C 0.115 3.885 12 C -0.087 4.087 13 C 0.038 3.962 14 N -0.504 5.504 15 C 0.047 3.953 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.328 4.328 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.051 3.949 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.396 0.604 44 H 0.276 0.724 45 H 0.067 0.933 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 -6.984 -19.247 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.050 3.950 4 H 0.147 0.853 5 F -0.182 7.182 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.374 5.374 9 C -0.006 4.006 10 C -0.091 4.091 11 C -0.007 4.007 12 C -0.125 4.125 13 C -0.090 4.090 14 N -0.228 5.228 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.215 5.215 19 C -0.458 4.458 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.472 -7.605 -19.262 22.773 hybrid contribution 1.388 0.053 0.657 1.536 sum -8.084 -7.552 -18.605 21.646 Atomic orbital electron populations 1.21766 0.92476 1.03504 1.02960 1.22001 0.98628 0.92648 1.04514 1.21731 0.89988 0.97380 0.85913 0.85312 1.92855 1.91890 1.84209 1.49226 1.20993 0.90987 0.79792 0.77945 1.90712 1.67403 1.41827 1.45125 1.49885 1.11371 1.35528 1.40589 1.23397 0.98485 0.91952 0.86792 1.21950 0.97310 0.96440 0.93358 1.23132 0.84448 1.00895 0.92243 1.21909 1.01936 0.96716 0.91931 1.23118 0.98816 0.88019 0.99064 1.65146 1.46256 1.06849 1.04556 1.21926 0.94714 1.01484 0.90340 1.20821 0.84664 0.82691 0.88871 1.90482 1.30496 1.47521 1.81614 1.41952 1.26295 1.46916 1.06358 1.19659 1.11225 1.31570 0.83322 0.90394 1.26009 0.95363 0.95754 1.04329 1.69675 1.16033 1.33649 1.36918 0.84898 0.78186 0.78257 0.77171 1.19814 1.19785 1.19687 1.22980 1.00109 0.98059 0.86549 0.90730 0.90932 0.92383 0.91247 0.89110 0.86423 0.88395 0.90582 0.87129 0.90347 0.90316 0.92155 0.94358 0.91281 0.86818 0.77057 0.91419 0.91457 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.83 71.98 0.71 -0.89 16 2 C -0.14 -2.06 5.41 30.59 0.17 -1.89 16 3 C 0.09 1.46 3.72 29.85 0.11 1.57 16 4 H 0.13 1.34 7.38 -2.39 -0.02 1.32 16 5 F -0.20 -4.11 16.75 44.97 0.75 -3.36 16 6 C 0.51 11.27 7.42 87.66 0.65 11.92 16 7 O -0.57 -17.34 17.38 -3.04 -0.05 -17.39 16 8 N -0.64 -11.03 3.68 -858.15 -3.16 -14.19 16 9 C 0.12 1.43 7.37 83.61 0.62 2.05 16 10 C -0.09 -1.37 1.29 -52.44 -0.07 -1.44 16 11 C 0.11 1.73 7.92 83.52 0.66 2.39 16 12 C -0.09 -1.73 6.53 31.21 0.20 -1.52 16 13 C 0.04 1.06 5.82 86.54 0.50 1.57 16 14 N -0.50 -14.01 5.06 -886.64 -4.49 -18.50 16 15 C 0.05 1.47 5.30 85.55 0.45 1.93 16 16 C 0.44 20.15 7.59 87.66 0.66 20.81 16 17 O -0.62 -32.78 14.43 -3.08 -0.04 -32.83 16 18 N -0.58 -28.81 5.29 -306.98 -1.62 -30.43 16 19 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 23 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 C 0.05 0.87 5.95 86.01 0.51 1.38 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.68 7.94 -2.39 -0.02 0.66 16 31 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.02 7.99 -2.39 -0.02 1.00 16 34 H 0.10 1.06 7.68 -2.39 -0.02 1.04 16 35 H 0.08 1.28 7.93 -2.38 -0.02 1.26 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.54 7.85 -2.39 -0.02 1.53 16 38 H 0.08 1.45 7.83 -2.39 -0.02 1.43 16 39 H 0.06 2.19 6.93 -2.38 -0.02 2.17 16 40 H 0.04 1.06 7.82 -2.38 -0.02 1.04 16 41 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 42 H 0.11 3.05 8.13 -2.39 -0.02 3.03 16 43 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 44 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.07 1.00 7.98 -2.39 -0.02 0.98 16 46 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 Total: -1.00 -74.09 381.00 0.42 -73.67 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.26 Total: 27.26 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.46 Total: 20.05 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -8.99 Total: -111.89 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.10 Total: -50.22 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.75 Total: -3.36 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.09 0.42 -73.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148059902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.490 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds