Wall clock time and date at job start Fri Apr 10 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48503 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47096 * 299.99485 * 3 2 1 6 6 H 1.48500 * 109.47285 * 60.00228 * 3 2 1 7 7 C 1.38946 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00282 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99739 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47201 * 179.97438 * 12 10 9 14 14 C 1.47139 * 110.99994 * 191.53491 * 13 12 10 15 15 C 1.54042 * 106.79180 * 219.11891 * 14 13 12 16 16 H 1.08997 * 114.10703 * 263.22771 * 15 14 13 17 17 C 1.56217 * 108.02640 * 135.25410 * 15 14 13 18 18 C 1.54856 * 102.10953 * 285.69567 * 17 15 14 19 19 N 1.47402 * 104.80717 * 323.14565 * 18 17 15 20 20 C 1.34773 * 125.58818 * 204.53490 * 19 18 17 21 21 O 1.21282 * 120.00504 * 180.02562 * 20 19 18 22 22 C 1.50699 * 120.00086 * 0.04266 * 20 19 18 23 23 C 1.53003 * 109.47595 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47558 * 179.97438 * 23 22 20 25 25 F 1.39904 * 109.47242 * 180.02562 * 24 23 22 26 26 C 1.46729 * 108.81959 * 24.57539 * 19 18 17 27 27 H 1.09005 * 111.29295 * 235.57915 * 26 19 18 28 28 C 1.47054 * 110.99894 * 69.87475 * 13 12 10 29 29 H 0.97002 * 120.00024 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00451 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47028 * 60.00288 * 12 10 9 32 32 H 1.09003 * 109.47232 * 299.99976 * 12 10 9 33 33 H 1.08999 * 109.99218 * 99.79029 * 14 13 12 34 34 H 1.08998 * 110.03601 * 338.47317 * 14 13 12 35 35 H 1.09004 * 110.52589 * 167.58901 * 17 15 14 36 36 H 1.09001 * 111.12662 * 44.07367 * 17 15 14 37 37 H 1.08995 * 110.37234 * 204.31283 * 18 17 15 38 38 H 1.09001 * 110.36482 * 81.97348 * 18 17 15 39 39 H 1.09001 * 109.47709 * 300.00003 * 22 20 19 40 40 H 1.09007 * 109.47151 * 60.00125 * 22 20 19 41 41 H 1.09001 * 109.46894 * 300.00869 * 23 22 20 42 42 H 1.09007 * 109.46469 * 60.00075 * 23 22 20 43 43 H 1.08998 * 109.47442 * 300.00785 * 24 23 22 44 44 H 1.09000 * 109.47082 * 60.00120 * 24 23 22 45 45 H 1.09002 * 109.76507 * 4.30119 * 28 13 12 46 46 H 1.09001 * 109.76185 * 243.58611 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.5177 -7.2549 -0.2749 15 6 2.1707 -8.3124 0.6352 16 1 2.9482 -8.9004 0.1476 17 6 1.0319 -9.1687 1.2756 18 6 0.4502 -8.1976 2.3323 19 7 1.6187 -7.4689 2.8579 20 6 1.6977 -6.8824 4.0687 21 8 2.7129 -6.3066 4.3987 22 6 0.5247 -6.9422 5.0129 23 6 0.8738 -6.2051 6.3075 24 6 -0.3173 -6.2654 7.2658 25 9 0.0017 -5.5908 8.4492 26 6 2.6814 -7.4859 1.8463 27 1 3.6053 -7.9007 2.2496 28 6 2.9008 -6.0731 1.2878 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3907 0.0002 31 1 0.6167 -4.9208 -0.8897 32 1 0.6173 -4.9205 0.8903 33 1 1.6502 -7.5306 -1.3210 34 1 0.4560 -7.1688 -0.0438 35 1 1.4440 -10.0596 1.7496 36 1 0.2781 -9.4366 0.5352 37 1 -0.0400 -8.7548 3.1305 38 1 -0.2505 -7.5050 1.8659 39 1 -0.3407 -6.4703 4.5478 40 1 0.2931 -7.9831 5.2391 41 1 1.7391 -6.6774 6.7725 42 1 1.1056 -5.1642 6.0816 43 1 -1.1823 -5.7929 6.8005 44 1 -0.5496 -7.3061 7.4916 45 1 2.4975 -5.3357 1.9819 46 1 3.9662 -5.8964 1.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188819265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:48 Heat of formation + Delta-G solvation = -113.986511 kcal Electronic energy + Delta-G solvation = -28782.238041 eV Core-core repulsion = 24620.984359 eV Total energy + Delta-G solvation = -4161.253682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.79842 -41.02768 -38.90228 -37.91170 -35.52007 -34.25059 -33.80231 -32.20766 -31.22488 -30.39248 -28.19767 -26.93159 -26.51017 -24.33543 -23.37551 -22.24551 -21.32988 -20.40578 -19.16514 -18.97766 -17.81012 -17.53071 -16.80625 -16.48225 -16.09589 -15.84196 -15.44593 -15.17415 -14.95586 -14.75369 -14.56055 -14.39567 -13.97177 -13.89464 -13.54985 -13.35036 -13.00199 -12.83439 -12.39894 -12.26862 -12.18062 -11.99126 -11.78827 -11.75290 -11.46331 -11.31994 -11.28307 -11.11037 -11.02702 -10.94008 -10.90429 -10.81014 -10.30378 -10.17968 -9.91447 -9.46408 -8.88500 -8.39384 -7.91855 -7.82512 -6.37506 -3.77713 2.51342 2.74009 3.19931 3.30063 3.37964 3.90087 3.95408 4.02845 4.21511 4.31359 4.39488 4.42738 4.46194 4.52569 4.72908 4.77799 4.88222 4.92821 4.94063 5.05224 5.10468 5.19658 5.23974 5.29297 5.36756 5.40168 5.47838 5.56217 5.60817 5.68857 5.70735 5.80111 5.86201 5.89167 5.99643 6.03525 6.28903 6.37085 6.45591 7.25791 7.29013 7.36803 7.59926 8.05387 8.11333 8.66883 9.23388 9.59244 10.11729 10.80630 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.003776 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.778476 B = 7412.690238 C = 9787.676008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.295 4.295 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.444 3.556 11 O -0.574 6.574 12 C 0.045 3.955 13 N -0.505 5.505 14 C 0.049 3.951 15 C -0.104 4.104 16 H 0.111 0.889 17 C -0.126 4.126 18 C 0.096 3.904 19 N -0.615 5.615 20 C 0.526 3.474 21 O -0.527 6.527 22 C -0.133 4.133 23 C -0.141 4.141 24 C 0.063 3.937 25 F -0.217 7.217 26 C 0.117 3.883 27 H 0.090 0.910 28 C 0.057 3.943 29 H 0.270 0.730 30 H 0.390 0.610 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -21.808 6.689 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.229 3.771 11 O -0.457 6.457 12 C -0.087 4.087 13 N -0.228 5.228 14 C -0.079 4.079 15 C -0.123 4.123 16 H 0.129 0.871 17 C -0.165 4.165 18 C -0.027 4.027 19 N -0.350 5.350 20 C 0.315 3.685 21 O -0.402 6.402 22 C -0.173 4.173 23 C -0.179 4.179 24 C 0.008 3.992 25 F -0.199 7.199 26 C 0.012 3.988 27 H 0.108 0.892 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.794 -21.149 6.597 22.667 hybrid contribution -0.997 0.787 0.559 1.387 sum -5.790 -20.363 7.156 22.347 Atomic orbital electron populations 1.69616 1.05925 1.27929 1.51141 1.25231 0.95620 0.99639 0.97472 0.85817 0.79781 0.81217 0.77657 1.19210 1.20772 1.20788 1.19748 0.93382 0.82212 1.47160 0.87918 1.41851 1.09063 1.04595 1.64940 1.19740 0.88472 0.84510 0.84344 1.90529 1.13625 1.86961 1.54562 1.22058 0.93852 0.91719 1.01031 1.62803 1.26584 1.01591 1.31855 1.22887 0.96439 0.88538 1.00044 1.23354 0.97903 0.96355 0.94725 0.87060 1.23004 0.98059 0.97596 0.97791 1.22381 0.88866 0.94336 0.97077 1.48526 1.16122 1.55194 1.15204 1.20250 0.89463 0.78085 0.80721 1.90774 1.32196 1.42135 1.75109 1.21522 0.97604 1.02844 0.95336 1.21937 0.98512 1.03446 0.94026 1.21976 0.98348 0.96922 0.81919 1.92780 1.94559 1.82731 1.49789 1.22534 0.91148 0.97231 0.87838 0.89222 1.22811 1.01275 0.94180 0.88923 0.92025 0.77656 0.89515 0.93793 0.90089 0.93392 0.90428 0.89388 0.90372 0.91215 0.88534 0.88748 0.89924 0.89577 0.90635 0.90884 0.91963 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 9 N -0.57 -14.82 5.29 -10.96 -0.06 -14.88 16 10 C 0.44 10.90 7.43 -10.99 -0.08 10.82 16 11 O -0.57 -16.19 15.12 5.54 0.08 -16.11 16 12 C 0.05 0.82 4.97 -4.97 -0.02 0.80 16 13 N -0.50 -8.44 4.81 -234.73 -1.13 -9.57 16 14 C 0.05 0.56 5.99 -3.15 -0.02 0.54 16 15 C -0.10 -0.97 4.41 -87.15 -0.38 -1.35 16 16 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.13 -0.80 6.34 -24.03 -0.15 -0.95 16 18 C 0.10 0.71 6.24 -2.57 -0.02 0.70 16 19 N -0.61 -6.98 2.98 -162.43 -0.48 -7.47 16 20 C 0.53 6.86 7.40 -10.99 -0.08 6.78 16 21 O -0.53 -9.36 15.86 5.56 0.09 -9.27 16 22 C -0.13 -1.13 4.70 -27.88 -0.13 -1.26 16 23 C -0.14 -1.40 4.96 -26.73 -0.13 -1.53 16 24 C 0.06 0.50 7.55 37.15 0.28 0.78 16 25 F -0.22 -2.51 17.36 2.25 0.04 -2.47 16 26 C 0.12 1.48 3.55 -66.35 -0.24 1.24 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 28 C 0.06 0.98 5.18 -3.48 -0.02 0.96 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 31 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 32 H 0.04 0.76 7.95 -51.93 -0.41 0.34 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.49 6.14 -51.93 -0.32 0.17 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.08 0.39 7.45 -51.93 -0.39 0.00 16 38 H 0.07 0.53 7.25 -51.93 -0.38 0.16 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.52 7.84 -51.92 -0.41 0.12 16 41 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.09 1.07 8.10 -51.92 -0.42 0.64 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.28 6.47 -51.93 -0.34 0.94 16 46 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -35.97 373.19 -8.50 -44.48 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.13 Total: 7.99 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.24 Total: 9.39 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.95 Total: -56.25 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.17 Total: -25.38 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.97 -8.50 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188819265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.510 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds