Wall clock time and date at job start Fri Apr 10 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48503 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47096 * 299.99485 * 3 2 1 6 6 H 1.48500 * 109.47285 * 60.00228 * 3 2 1 7 7 C 1.38946 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00282 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99739 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47201 * 179.97438 * 12 10 9 14 14 C 1.47139 * 110.99994 * 191.53491 * 13 12 10 15 15 C 1.54042 * 106.79180 * 219.11891 * 14 13 12 16 16 H 1.08997 * 114.10703 * 263.22771 * 15 14 13 17 17 C 1.56217 * 108.02640 * 135.25410 * 15 14 13 18 18 C 1.54856 * 102.10953 * 285.69567 * 17 15 14 19 19 N 1.47402 * 104.80717 * 323.14565 * 18 17 15 20 20 C 1.34773 * 125.58818 * 204.53490 * 19 18 17 21 21 O 1.21282 * 120.00504 * 180.02562 * 20 19 18 22 22 C 1.50699 * 120.00086 * 0.04266 * 20 19 18 23 23 C 1.53003 * 109.47595 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47558 * 179.97438 * 23 22 20 25 25 F 1.39904 * 109.47242 * 180.02562 * 24 23 22 26 26 C 1.46729 * 108.81959 * 24.57539 * 19 18 17 27 27 H 1.09005 * 111.29295 * 235.57915 * 26 19 18 28 28 C 1.47054 * 110.99894 * 69.87475 * 13 12 10 29 29 H 0.97002 * 120.00024 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00451 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47028 * 60.00288 * 12 10 9 32 32 H 1.09003 * 109.47232 * 299.99976 * 12 10 9 33 33 H 1.08999 * 109.99218 * 99.79029 * 14 13 12 34 34 H 1.08998 * 110.03601 * 338.47317 * 14 13 12 35 35 H 1.09004 * 110.52589 * 167.58901 * 17 15 14 36 36 H 1.09001 * 111.12662 * 44.07367 * 17 15 14 37 37 H 1.08995 * 110.37234 * 204.31283 * 18 17 15 38 38 H 1.09001 * 110.36482 * 81.97348 * 18 17 15 39 39 H 1.09001 * 109.47709 * 300.00003 * 22 20 19 40 40 H 1.09007 * 109.47151 * 60.00125 * 22 20 19 41 41 H 1.09001 * 109.46894 * 300.00869 * 23 22 20 42 42 H 1.09007 * 109.46469 * 60.00075 * 23 22 20 43 43 H 1.08998 * 109.47442 * 300.00785 * 24 23 22 44 44 H 1.09000 * 109.47082 * 60.00120 * 24 23 22 45 45 H 1.09002 * 109.76507 * 4.30119 * 28 13 12 46 46 H 1.09001 * 109.76185 * 243.58611 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.5177 -7.2549 -0.2749 15 6 2.1707 -8.3124 0.6352 16 1 2.9482 -8.9004 0.1476 17 6 1.0319 -9.1687 1.2756 18 6 0.4502 -8.1976 2.3323 19 7 1.6187 -7.4689 2.8579 20 6 1.6977 -6.8824 4.0687 21 8 2.7129 -6.3066 4.3987 22 6 0.5247 -6.9422 5.0129 23 6 0.8738 -6.2051 6.3075 24 6 -0.3173 -6.2654 7.2658 25 9 0.0017 -5.5908 8.4492 26 6 2.6814 -7.4859 1.8463 27 1 3.6053 -7.9007 2.2496 28 6 2.9008 -6.0731 1.2878 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3907 0.0002 31 1 0.6167 -4.9208 -0.8897 32 1 0.6173 -4.9205 0.8903 33 1 1.6502 -7.5306 -1.3210 34 1 0.4560 -7.1688 -0.0438 35 1 1.4440 -10.0596 1.7496 36 1 0.2781 -9.4366 0.5352 37 1 -0.0400 -8.7548 3.1305 38 1 -0.2505 -7.5050 1.8659 39 1 -0.3407 -6.4703 4.5478 40 1 0.2931 -7.9831 5.2391 41 1 1.7391 -6.6774 6.7725 42 1 1.1056 -5.1642 6.0816 43 1 -1.1823 -5.7929 6.8005 44 1 -0.5496 -7.3061 7.4916 45 1 2.4975 -5.3357 1.9819 46 1 3.9662 -5.8964 1.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188819265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:48 Heat of formation + Delta-G solvation = -141.739726 kcal Electronic energy + Delta-G solvation = -28783.441510 eV Core-core repulsion = 24620.984359 eV Total energy + Delta-G solvation = -4162.457151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.57904 -42.00274 -40.29913 -39.48077 -36.74377 -35.87075 -35.05069 -33.35626 -33.08044 -31.53003 -29.22811 -27.91858 -27.78054 -26.13703 -24.15888 -23.12577 -22.43443 -21.34630 -20.85532 -20.00753 -19.89198 -18.43505 -17.80126 -17.55401 -17.31672 -16.79406 -16.62305 -16.45925 -16.40614 -15.93362 -15.78122 -15.65671 -15.41378 -14.98079 -14.79627 -14.54928 -14.20044 -13.97087 -13.68487 -13.59692 -13.31376 -13.06780 -12.96778 -12.92009 -12.84283 -12.46965 -12.45810 -12.34642 -12.15876 -12.04580 -12.00119 -11.88878 -11.64662 -11.57754 -11.53985 -10.95487 -10.37178 -10.04443 -9.84020 -9.15542 -8.50612 -5.99222 1.32627 1.37424 1.51872 1.55343 1.89650 2.01399 2.25601 2.78276 3.14175 3.18865 3.34801 3.54343 3.60117 3.65989 3.68228 3.82866 4.09308 4.11804 4.15644 4.20565 4.23956 4.31002 4.35842 4.38803 4.40989 4.47593 4.50875 4.58065 4.69469 4.73150 4.78608 4.85615 4.95224 5.00585 5.14734 5.15867 5.21612 5.27480 5.36859 5.37758 5.83102 5.99408 6.15538 6.48508 6.57234 7.09614 7.11038 7.51810 8.09167 8.67199 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.003776 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.778476 B = 7412.690238 C = 9787.676008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.073 0.927 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.620 6.620 12 C 0.062 3.938 13 N -0.527 5.527 14 C 0.046 3.954 15 C -0.093 4.093 16 H 0.126 0.874 17 C -0.110 4.110 18 C 0.086 3.914 19 N -0.613 5.613 20 C 0.511 3.489 21 O -0.593 6.593 22 C -0.120 4.120 23 C -0.140 4.140 24 C 0.063 3.937 25 F -0.241 7.241 26 C 0.117 3.883 27 H 0.078 0.922 28 C 0.066 3.934 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.018 0.982 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -24.529 6.184 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.091 0.909 9 N -0.212 5.212 10 C 0.223 3.777 11 O -0.506 6.506 12 C -0.069 4.069 13 N -0.251 5.251 14 C -0.081 4.081 15 C -0.112 4.112 16 H 0.144 0.856 17 C -0.148 4.148 18 C -0.035 4.035 19 N -0.346 5.346 20 C 0.302 3.698 21 O -0.474 6.474 22 C -0.159 4.159 23 C -0.179 4.179 24 C 0.008 3.992 25 F -0.223 7.223 26 C 0.012 3.988 27 H 0.096 0.904 28 C -0.063 4.063 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.037 0.963 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.206 -23.917 6.065 26.003 hybrid contribution 0.087 1.638 0.675 1.774 sum -8.119 -22.279 6.740 24.651 Atomic orbital electron populations 1.69660 1.06684 1.29258 1.50354 1.25991 0.96584 1.02208 0.96191 0.84912 0.77886 0.77207 0.78566 1.20229 1.19015 1.19518 1.19650 0.92512 0.84185 1.50085 0.90909 1.41904 1.09208 1.04649 1.65433 1.20942 0.88382 0.86215 0.82152 1.90496 1.16029 1.87947 1.56086 1.21871 0.93379 0.88741 1.02923 1.62683 1.27468 1.03646 1.31323 1.23079 0.97423 0.86191 1.01361 1.23387 0.99396 0.95967 0.92444 0.85625 1.23045 0.97085 0.96989 0.97705 1.22794 0.87398 0.94599 0.98702 1.48643 1.17053 1.54675 1.14258 1.21225 0.89910 0.77001 0.81649 1.90745 1.34999 1.44999 1.76619 1.21551 0.95793 1.05441 0.93132 1.21878 0.99241 1.01153 0.95622 1.22208 0.97525 0.99015 0.80438 1.92731 1.94754 1.83502 1.51277 1.22397 0.92117 0.94622 0.89704 0.90377 1.22518 0.98614 0.96297 0.88835 0.91201 0.77015 0.86552 0.92383 0.88672 0.91062 0.88773 0.86412 0.86680 0.90817 0.86349 0.84282 0.91632 0.93503 0.88654 0.87207 0.96340 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 44.83 29.55 68.60 2.03 46.86 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.33 -20.08 9.68 84.04 0.81 -19.26 16 8 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -31.16 5.29 -306.98 -1.62 -32.78 16 10 C 0.44 22.38 7.43 87.66 0.65 23.03 16 11 O -0.62 -37.44 15.12 -3.09 -0.05 -37.48 16 12 C 0.06 2.27 4.97 85.56 0.43 2.69 16 13 N -0.53 -17.70 4.81 -896.56 -4.31 -22.01 16 14 C 0.05 0.92 5.99 86.61 0.52 1.44 16 15 C -0.09 -1.45 4.41 -8.55 -0.04 -1.49 16 16 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.11 -0.79 6.34 32.35 0.20 -0.58 16 18 C 0.09 0.86 6.24 86.84 0.54 1.40 16 19 N -0.61 -13.06 2.98 -786.20 -2.35 -15.41 16 20 C 0.51 13.41 7.40 87.66 0.65 14.06 16 21 O -0.59 -22.95 15.86 -3.04 -0.05 -23.00 16 22 C -0.12 -1.78 4.70 29.85 0.14 -1.64 16 23 C -0.14 -2.79 4.96 30.59 0.15 -2.64 16 24 C 0.06 0.87 7.55 71.98 0.54 1.41 16 25 F -0.24 -5.50 17.36 44.97 0.78 -4.71 16 26 C 0.12 2.97 3.55 45.89 0.16 3.13 16 27 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 28 C 0.07 2.47 5.18 86.44 0.45 2.92 16 29 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.40 20.12 7.90 -92.71 -0.73 19.39 16 31 H 0.12 3.56 8.06 -2.39 -0.02 3.54 16 32 H 0.06 1.96 7.95 -2.39 -0.02 1.94 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.13 6.14 -2.39 -0.01 1.11 16 35 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.12 0.28 8.09 -2.39 -0.02 0.26 16 37 H 0.12 0.38 7.45 -2.39 -0.02 0.37 16 38 H 0.07 0.74 7.25 -2.39 -0.02 0.72 16 39 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.14 0.85 7.84 -2.38 -0.02 0.83 16 41 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 42 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.02 0.82 6.47 -2.39 -0.02 0.80 16 46 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -88.31 373.19 0.66 -87.65 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.26 Total: 26.97 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 5.68 Total: 24.38 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -8.00 Total: -120.67 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.09 Total: -60.48 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -88.31 0.66 -87.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188819265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.092 kcal (2) G-P(sol) polarization free energy of solvation -88.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds