Wall clock time and date at job start Fri Apr 10 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.65716 * 2 1 4 4 C 1.54602 * 110.98783 * 236.85140 * 2 1 3 5 5 N 1.48111 * 103.42628 * 204.37094 * 4 2 1 6 6 C 1.34770 * 127.03541 * 219.28851 * 5 4 2 7 7 O 1.21282 * 120.00210 * 4.37007 * 6 5 4 8 8 C 1.50706 * 120.00111 * 184.37265 * 6 5 4 9 9 C 1.53000 * 115.56410 * 44.47266 * 8 6 5 10 10 F 1.39895 * 109.47205 * 211.22028 * 9 8 6 11 11 C 1.53001 * 117.49924 * 190.16631 * 8 6 5 12 12 C 1.53002 * 60.00229 * 107.48377 * 11 8 6 13 13 C 1.47491 * 105.92972 * 39.02096 * 5 4 2 14 14 C 1.53998 * 107.08583 * 334.77951 * 13 5 4 15 15 H 1.09001 * 110.32461 * 120.19587 * 14 13 5 16 16 N 1.46897 * 110.32787 * 242.31115 * 14 13 5 17 17 C 1.46900 * 111.00209 * 273.54388 * 16 14 13 18 18 C 1.50698 * 109.47442 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99989 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99964 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00235 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00123 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99879 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99935 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47192 * 89.99473 * 25 23 21 27 27 H 1.48500 * 109.46625 * 209.99671 * 25 23 21 28 28 H 1.48497 * 109.47085 * 329.99583 * 25 23 21 29 29 H 1.09001 * 109.46890 * 296.80079 * 1 2 3 30 30 H 1.08998 * 109.47627 * 56.80202 * 1 2 3 31 31 H 1.09001 * 109.47333 * 176.80838 * 1 2 3 32 32 H 1.09004 * 110.61672 * 85.85383 * 4 2 1 33 33 H 1.08998 * 110.54634 * 322.85586 * 4 2 1 34 34 H 1.09003 * 109.46884 * 331.21868 * 9 8 6 35 35 H 1.08995 * 109.47160 * 91.21583 * 9 8 6 36 36 H 1.09001 * 117.49862 * 359.97438 * 11 8 6 37 37 H 1.09001 * 117.49515 * 214.97473 * 11 8 6 38 38 H 1.08998 * 117.49482 * 107.48348 * 12 11 8 39 39 H 1.08994 * 117.50241 * 252.48494 * 12 11 8 40 40 H 1.08997 * 109.91342 * 94.14449 * 13 5 4 41 41 H 1.09000 * 109.91464 * 215.22723 * 13 5 4 42 42 H 1.00895 * 110.99960 * 37.49903 * 16 14 13 43 43 H 1.09000 * 109.47317 * 300.00467 * 17 16 14 44 44 H 1.09000 * 109.46626 * 59.99920 * 17 16 14 45 45 H 0.96999 * 120.00218 * 0.02562 * 20 18 17 46 46 H 0.97003 * 119.99606 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7588 6 6 4.5592 -1.2403 -1.4969 7 8 4.5491 -0.8321 -2.6389 8 6 5.8322 -1.7864 -0.9032 9 6 5.6862 -3.0868 -0.1103 10 9 6.6379 -3.1174 0.9146 11 6 7.1251 -1.5836 -1.6956 12 6 6.8757 -0.7774 -0.4194 13 6 3.2903 -1.5681 0.6638 14 6 2.0776 -0.7917 1.2099 15 1 1.3222 -1.4832 1.5832 16 7 2.4981 0.1275 2.2758 17 6 2.5189 -0.5512 3.5785 18 6 2.9545 0.4208 4.6445 19 8 3.2210 1.5665 4.3483 20 7 3.0470 0.0175 5.9271 21 6 3.4428 0.9019 6.8970 22 1 3.6808 1.9218 6.6332 23 6 3.5386 0.4859 8.2193 24 7 3.2494 -0.7552 8.5403 25 14 4.0772 1.6912 9.5409 26 1 2.8849 2.3753 10.1026 27 1 4.7822 0.9573 10.6225 28 1 4.9928 2.6990 8.9483 29 1 -0.3633 0.4634 0.9173 30 1 -0.3634 0.5626 -0.8599 31 1 -0.3634 -1.0261 -0.0572 32 1 2.1523 -0.1477 -2.0871 33 1 1.4611 -1.6599 -1.4146 34 1 4.6863 -3.1392 0.3206 35 1 5.8403 -3.9368 -0.7749 36 1 7.0550 -1.0555 -2.6466 37 1 7.8717 -2.3766 -1.6521 38 1 7.4581 -1.0401 0.4637 39 1 6.6419 0.2814 -0.5305 40 1 3.1179 -2.6402 0.7583 41 1 4.1909 -1.2876 1.2100 42 1 3.3964 0.5367 2.0669 43 1 1.5207 -0.9225 3.8107 44 1 3.2178 -1.3868 3.5416 45 1 2.8335 -0.8986 6.1640 46 1 3.3160 -1.0455 9.4635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215507840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:44 Heat of formation + Delta-G solvation = -84.889861 kcal Electronic energy + Delta-G solvation = -28606.781217 eV Core-core repulsion = 24446.789260 eV Total energy + Delta-G solvation = -4159.991956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.00069 -40.70654 -38.88644 -38.01169 -36.57120 -34.68941 -33.81464 -32.92124 -31.24722 -29.02286 -28.68523 -26.66337 -26.28513 -24.36539 -23.21705 -22.78158 -21.78870 -20.55262 -19.29590 -19.20505 -17.91666 -17.59521 -16.84101 -16.46075 -16.11252 -15.78331 -15.67251 -15.43398 -15.11732 -14.77099 -14.51486 -14.37628 -13.92704 -13.73597 -13.66186 -13.42190 -13.03703 -12.69963 -12.62552 -12.38420 -12.27218 -12.15201 -11.88306 -11.69457 -11.64961 -11.55602 -11.22854 -11.09228 -11.05887 -10.89163 -10.80259 -10.41683 -10.40910 -10.24004 -10.09849 -9.53476 -9.11593 -8.49731 -8.12709 -7.98871 -6.44262 -3.85066 2.16134 2.54228 3.16461 3.25466 3.31190 3.35169 3.86241 3.95266 4.00839 4.05258 4.19603 4.23110 4.33845 4.45832 4.49978 4.66115 4.83604 4.85861 4.92002 5.08670 5.10149 5.20757 5.23598 5.29727 5.36545 5.38320 5.41162 5.43634 5.54469 5.57699 5.60788 5.69516 5.83457 5.84089 5.88619 5.91793 6.07656 6.16777 6.26286 7.10375 7.19125 7.51417 7.53089 7.83313 8.03388 8.58058 9.15363 9.51112 10.02251 10.73362 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003067 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.813261 B = 9127.272006 C =10485.633531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.576 3.424 7 O -0.535 6.535 8 C -0.207 4.207 9 C 0.091 3.909 10 F -0.205 7.205 11 C -0.135 4.135 12 C -0.139 4.139 13 C 0.063 3.937 14 C 0.080 3.920 15 H 0.097 0.903 16 N -0.654 5.654 17 C 0.048 3.952 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.352 0.648 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -8.022 -18.403 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.015 4.015 5 N -0.349 5.349 6 C 0.364 3.636 7 O -0.412 6.412 8 C -0.211 4.211 9 C 0.037 3.963 10 F -0.186 7.186 11 C -0.172 4.172 12 C -0.176 4.176 13 C -0.062 4.062 14 C -0.031 4.031 15 H 0.115 0.885 16 N -0.286 5.286 17 C -0.085 4.085 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.173 0.827 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.398 -6.861 -18.942 20.150 hybrid contribution 0.904 -0.758 1.012 1.554 sum 0.506 -7.619 -17.930 19.488 Atomic orbital electron populations 1.21676 0.93332 1.01734 1.02709 1.22237 0.96529 1.00309 0.92347 0.88952 1.22591 0.81731 0.98888 0.98337 1.48615 1.08455 1.66189 1.11603 1.18837 0.82226 0.77775 0.84760 1.90704 1.84406 1.48140 1.17901 1.22103 0.91144 1.00229 1.07592 1.21599 0.92017 0.95682 0.87026 1.92794 1.67068 1.97402 1.61339 1.23068 0.94341 1.02919 0.96875 1.23131 0.98250 0.96810 0.99449 1.23319 1.00991 1.00002 0.81916 1.22686 0.95136 0.93261 0.92061 0.88472 1.60173 1.36966 1.31530 0.99928 1.21751 1.01593 0.95451 0.89656 1.19764 0.85047 0.89106 0.83609 1.90536 1.54864 1.19764 1.81557 1.41853 1.59171 1.13377 1.05462 1.19701 1.41811 0.94963 0.86458 0.87921 1.25259 0.97495 0.96758 0.98351 1.69611 1.48893 1.15922 1.19823 0.85862 0.78817 0.79808 0.79843 1.20377 1.20920 1.19403 0.91217 0.92491 0.92708 0.89598 0.90763 0.89303 0.89844 0.87100 0.87592 0.86577 0.87776 0.90932 0.90110 0.82701 0.89380 0.93771 0.77466 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.17 37.16 0.34 -0.81 16 2 C -0.09 -0.93 3.36 -88.93 -0.30 -1.23 16 3 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 4 C 0.11 1.02 6.54 -2.31 -0.02 1.00 16 5 N -0.62 -6.57 3.27 -169.98 -0.56 -7.12 16 6 C 0.58 7.09 7.37 -10.99 -0.08 7.00 16 7 O -0.53 -8.22 16.50 5.56 0.09 -8.13 16 8 C -0.21 -2.13 2.07 -155.65 -0.32 -2.46 16 9 C 0.09 0.82 7.17 37.16 0.27 1.09 16 10 F -0.21 -2.28 15.92 2.25 0.04 -2.24 16 11 C -0.13 -1.26 9.76 -26.73 -0.26 -1.52 16 12 C -0.14 -1.41 9.62 -26.73 -0.26 -1.66 16 13 C 0.06 0.61 4.66 -2.98 -0.01 0.59 16 14 C 0.08 0.84 2.88 -66.34 -0.19 0.65 16 15 H 0.10 0.91 7.57 -51.93 -0.39 0.52 16 16 N -0.65 -9.50 5.85 -106.54 -0.62 -10.13 16 17 C 0.05 0.77 6.00 -4.98 -0.03 0.74 16 18 C 0.44 9.97 7.82 -10.99 -0.09 9.88 16 19 O -0.58 -15.43 15.78 5.54 0.09 -15.34 16 20 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 25 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.09 0.90 7.82 -51.93 -0.41 0.49 16 33 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 34 H 0.09 0.73 4.35 -51.93 -0.23 0.50 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.11 7.71 -51.93 -0.40 0.71 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 1.16 7.18 -51.93 -0.37 0.79 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.57 6.81 -51.93 -0.35 0.21 16 41 H 0.08 0.87 6.96 -51.93 -0.36 0.51 16 42 H 0.35 5.55 7.93 -39.29 -0.31 5.24 16 43 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 44 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 45 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -32.50 378.92 -7.67 -40.17 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.87 Total: 13.17 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.19 Total: 5.42 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.51 Total: -54.55 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.50 -7.67 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215507840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.723 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds