Wall clock time and date at job start Fri Apr 10 2020 14:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.65716 * 2 1 4 4 C 1.54602 * 110.98783 * 236.85140 * 2 1 3 5 5 N 1.48111 * 103.42628 * 204.37094 * 4 2 1 6 6 C 1.34770 * 127.03541 * 219.28851 * 5 4 2 7 7 O 1.21282 * 120.00210 * 4.37007 * 6 5 4 8 8 C 1.50706 * 120.00111 * 184.37265 * 6 5 4 9 9 C 1.53000 * 115.56410 * 44.47266 * 8 6 5 10 10 F 1.39895 * 109.47205 * 211.22028 * 9 8 6 11 11 C 1.53001 * 117.49924 * 190.16631 * 8 6 5 12 12 C 1.53002 * 60.00229 * 107.48377 * 11 8 6 13 13 C 1.47491 * 105.92972 * 39.02096 * 5 4 2 14 14 C 1.53998 * 107.08583 * 334.77951 * 13 5 4 15 15 H 1.09001 * 110.32461 * 120.19587 * 14 13 5 16 16 N 1.46897 * 110.32787 * 242.31115 * 14 13 5 17 17 C 1.46900 * 111.00209 * 273.54388 * 16 14 13 18 18 C 1.50698 * 109.47442 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99989 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99964 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00235 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00123 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99879 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99935 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47192 * 89.99473 * 25 23 21 27 27 H 1.48500 * 109.46625 * 209.99671 * 25 23 21 28 28 H 1.48497 * 109.47085 * 329.99583 * 25 23 21 29 29 H 1.09001 * 109.46890 * 296.80079 * 1 2 3 30 30 H 1.08998 * 109.47627 * 56.80202 * 1 2 3 31 31 H 1.09001 * 109.47333 * 176.80838 * 1 2 3 32 32 H 1.09004 * 110.61672 * 85.85383 * 4 2 1 33 33 H 1.08998 * 110.54634 * 322.85586 * 4 2 1 34 34 H 1.09003 * 109.46884 * 331.21868 * 9 8 6 35 35 H 1.08995 * 109.47160 * 91.21583 * 9 8 6 36 36 H 1.09001 * 117.49862 * 359.97438 * 11 8 6 37 37 H 1.09001 * 117.49515 * 214.97473 * 11 8 6 38 38 H 1.08998 * 117.49482 * 107.48348 * 12 11 8 39 39 H 1.08994 * 117.50241 * 252.48494 * 12 11 8 40 40 H 1.08997 * 109.91342 * 94.14449 * 13 5 4 41 41 H 1.09000 * 109.91464 * 215.22723 * 13 5 4 42 42 H 1.00895 * 110.99960 * 37.49903 * 16 14 13 43 43 H 1.09000 * 109.47317 * 300.00467 * 17 16 14 44 44 H 1.09000 * 109.46626 * 59.99920 * 17 16 14 45 45 H 0.96999 * 120.00218 * 0.02562 * 20 18 17 46 46 H 0.97003 * 119.99606 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7588 6 6 4.5592 -1.2403 -1.4969 7 8 4.5491 -0.8321 -2.6389 8 6 5.8322 -1.7864 -0.9032 9 6 5.6862 -3.0868 -0.1103 10 9 6.6379 -3.1174 0.9146 11 6 7.1251 -1.5836 -1.6956 12 6 6.8757 -0.7774 -0.4194 13 6 3.2903 -1.5681 0.6638 14 6 2.0776 -0.7917 1.2099 15 1 1.3222 -1.4832 1.5832 16 7 2.4981 0.1275 2.2758 17 6 2.5189 -0.5512 3.5785 18 6 2.9545 0.4208 4.6445 19 8 3.2210 1.5665 4.3483 20 7 3.0470 0.0175 5.9271 21 6 3.4428 0.9019 6.8970 22 1 3.6808 1.9218 6.6332 23 6 3.5386 0.4859 8.2193 24 7 3.2494 -0.7552 8.5403 25 14 4.0772 1.6912 9.5409 26 1 2.8849 2.3753 10.1026 27 1 4.7822 0.9573 10.6225 28 1 4.9928 2.6990 8.9483 29 1 -0.3633 0.4634 0.9173 30 1 -0.3634 0.5626 -0.8599 31 1 -0.3634 -1.0261 -0.0572 32 1 2.1523 -0.1477 -2.0871 33 1 1.4611 -1.6599 -1.4146 34 1 4.6863 -3.1392 0.3206 35 1 5.8403 -3.9368 -0.7749 36 1 7.0550 -1.0555 -2.6466 37 1 7.8717 -2.3766 -1.6521 38 1 7.4581 -1.0401 0.4637 39 1 6.6419 0.2814 -0.5305 40 1 3.1179 -2.6402 0.7583 41 1 4.1909 -1.2876 1.2100 42 1 3.3964 0.5367 2.0669 43 1 1.5207 -0.9225 3.8107 44 1 3.2178 -1.3868 3.5416 45 1 2.8335 -0.8986 6.1640 46 1 3.3160 -1.0455 9.4635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215507840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:42 Heat of formation + Delta-G solvation = -107.920817 kcal Electronic energy + Delta-G solvation = -28607.779914 eV Core-core repulsion = 24446.789260 eV Total energy + Delta-G solvation = -4160.990653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -48.77629 -41.59872 -40.21803 -39.39348 -37.45841 -36.15508 -35.46266 -33.79208 -33.22572 -30.07206 -29.44690 -27.81894 -27.34821 -25.92502 -24.21948 -23.55929 -22.64519 -21.53075 -20.86046 -20.11590 -19.87350 -18.43701 -17.90499 -17.64442 -17.05734 -16.74281 -16.72597 -16.49206 -16.27893 -16.11712 -15.93070 -15.60336 -15.22359 -15.05995 -14.69206 -14.37223 -14.04504 -13.90318 -13.53730 -13.47707 -13.35971 -13.31895 -13.01196 -13.00071 -12.80361 -12.62411 -12.44595 -12.40654 -12.12748 -12.01622 -11.91094 -11.70501 -11.60141 -11.49352 -11.17153 -11.04268 -10.33437 -10.00974 -9.97849 -9.24566 -8.45497 -5.93598 1.24674 1.38605 1.42777 1.54844 1.70436 2.07973 2.29973 2.56707 2.88267 3.15523 3.22467 3.30216 3.39952 3.46672 3.60030 3.68886 3.71556 3.97991 4.06211 4.09683 4.17517 4.32874 4.35667 4.43566 4.51544 4.54703 4.58911 4.60785 4.65586 4.68252 4.73284 4.78668 4.83743 4.85009 5.06457 5.10452 5.12980 5.31463 5.42559 5.47037 5.91963 6.12659 6.25126 6.37033 6.62208 6.91390 7.14825 7.58884 8.14610 8.71721 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003067 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.813261 B = 9127.272006 C =10485.633531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 H 0.065 0.935 4 C 0.108 3.892 5 N -0.614 5.614 6 C 0.571 3.429 7 O -0.573 6.573 8 C -0.210 4.210 9 C 0.092 3.908 10 F -0.217 7.217 11 C -0.126 4.126 12 C -0.146 4.146 13 C 0.065 3.935 14 C 0.083 3.917 15 H 0.121 0.879 16 N -0.669 5.669 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.342 0.658 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -10.081 -18.415 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.013 4.013 5 N -0.346 5.346 6 C 0.360 3.640 7 O -0.453 6.453 8 C -0.213 4.213 9 C 0.037 3.963 10 F -0.198 7.198 11 C -0.163 4.163 12 C -0.183 4.183 13 C -0.059 4.059 14 C -0.028 4.028 15 H 0.139 0.861 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.130 0.870 44 H 0.089 0.911 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.130 -8.956 -18.942 20.983 hybrid contribution 1.087 -0.069 0.951 1.446 sum -0.043 -9.024 -17.991 20.128 Atomic orbital electron populations 1.21641 0.91910 1.03118 1.02256 1.22156 0.97581 0.98855 0.92336 0.91630 1.22674 0.81504 0.99644 0.97515 1.48683 1.08539 1.65385 1.11992 1.19161 0.83026 0.77392 0.84430 1.90682 1.85060 1.49979 1.19600 1.22146 0.90421 1.00822 1.07946 1.21747 0.92148 0.95444 0.86911 1.92771 1.67673 1.97412 1.61983 1.23117 0.94329 1.02946 0.95909 1.23087 0.98728 0.96362 1.00117 1.23357 1.00068 1.01567 0.80920 1.22797 0.95888 0.93090 0.91008 0.86104 1.60159 1.36489 1.32994 1.00373 1.21617 1.03167 0.93957 0.88021 1.20959 0.82935 0.89616 0.84124 1.90507 1.56219 1.22227 1.82323 1.41912 1.59829 1.13236 1.05954 1.19632 1.43947 0.94704 0.88028 0.90547 1.25974 0.97014 0.98414 0.99649 1.69661 1.48872 1.16843 1.20562 0.84983 0.78484 0.77809 0.77415 1.19711 1.19533 1.19928 0.92699 0.91828 0.90498 0.90918 0.88085 0.88291 0.87598 0.88059 0.85576 0.86428 0.88928 0.87804 0.91197 0.83904 0.87023 0.91086 0.76869 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.17 71.98 0.66 -1.27 16 2 C -0.09 -1.63 3.36 -9.70 -0.03 -1.66 16 3 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 4 C 0.11 1.87 6.54 86.62 0.57 2.44 16 5 N -0.61 -12.14 3.27 -810.08 -2.65 -14.79 16 6 C 0.57 13.65 7.37 87.66 0.65 14.30 16 7 O -0.57 -17.71 16.50 -3.04 -0.05 -17.76 16 8 C -0.21 -4.10 2.07 -52.92 -0.11 -4.21 16 9 C 0.09 1.43 7.17 71.98 0.52 1.94 16 10 F -0.22 -4.42 15.92 44.97 0.72 -3.70 16 11 C -0.13 -2.25 9.76 30.60 0.30 -1.95 16 12 C -0.15 -2.93 9.62 30.60 0.29 -2.64 16 13 C 0.07 1.09 4.66 86.53 0.40 1.49 16 14 C 0.08 1.53 2.88 45.80 0.13 1.67 16 15 H 0.12 1.74 7.57 -2.39 -0.02 1.72 16 16 N -0.67 -18.65 5.85 -491.00 -2.87 -21.53 16 17 C 0.06 1.95 6.00 85.56 0.51 2.46 16 18 C 0.44 19.83 7.82 87.66 0.69 20.51 16 19 O -0.63 -33.99 15.78 -3.08 -0.05 -34.04 16 20 N -0.57 -28.37 5.29 -306.99 -1.62 -29.99 16 21 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 25 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.81 8.11 -2.39 -0.02 0.79 16 32 H 0.07 1.48 7.82 -2.39 -0.02 1.46 16 33 H 0.10 1.25 8.02 -2.39 -0.02 1.23 16 34 H 0.10 1.30 4.35 -2.39 -0.01 1.29 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 2.02 7.71 -2.39 -0.02 2.01 16 37 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.12 2.32 7.18 -2.39 -0.02 2.31 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 1.16 6.81 -2.39 -0.02 1.15 16 41 H 0.07 1.38 6.96 -2.39 -0.02 1.36 16 42 H 0.34 10.79 7.93 -89.70 -0.71 10.07 16 43 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 44 H 0.07 1.80 8.11 -2.39 -0.02 1.79 16 45 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 46 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -72.15 378.92 1.21 -70.94 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.42 Total: 39.48 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 5.85 Total: 15.15 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.87 Total: -114.61 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.10 Total: -51.81 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.72 Total: -3.70 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.15 1.21 -70.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215507840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.983 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds