Wall clock time and date at job start Fri Apr 10 2020 14:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47525 * 2 1 4 4 F 1.39909 * 109.46917 * 239.99712 * 2 1 3 5 5 C 1.50705 * 109.47151 * 120.00253 * 2 1 3 6 6 O 1.21279 * 119.99742 * 249.99405 * 5 2 1 7 7 N 1.34771 * 120.00149 * 69.99859 * 5 2 1 8 8 C 1.47234 * 136.44666 * 359.61936 * 7 5 2 9 9 C 1.54272 * 87.56484 * 151.81523 * 8 7 5 10 10 H 1.09001 * 113.90689 * 140.40126 * 9 8 7 11 11 C 1.51760 * 113.42435 * 271.67670 * 9 8 7 12 12 C 1.51678 * 113.41922 * 125.13343 * 11 9 8 13 13 N 1.46395 * 111.36734 * 312.64081 * 12 11 9 14 14 C 1.46898 * 110.99958 * 188.94224 * 13 12 11 15 15 C 1.50698 * 109.47249 * 295.53864 * 14 13 12 16 16 O 1.21301 * 119.99937 * 5.74188 * 15 14 13 17 17 N 1.34773 * 120.00274 * 185.73848 * 15 14 13 18 18 C 1.37100 * 120.00212 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99735 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99764 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00465 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99649 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47205 * 60.00245 * 22 20 18 24 24 H 1.48499 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47184 * 300.00194 * 22 20 18 26 26 C 1.45291 * 110.97564 * 64.81633 * 13 12 11 27 27 C 1.46602 * 136.45057 * 180.02562 * 7 5 2 28 28 H 1.09002 * 112.82837 * 94.33629 * 27 7 5 29 29 H 1.09006 * 109.46810 * 300.00345 * 1 2 3 30 30 H 1.09001 * 109.47192 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.47547 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47133 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47229 * 299.99778 * 3 2 1 34 34 H 1.08994 * 109.47221 * 60.00384 * 3 2 1 35 35 H 1.09001 * 113.52061 * 266.45698 * 8 7 5 36 36 H 1.08996 * 113.51922 * 37.06261 * 8 7 5 37 37 H 1.08999 * 108.68826 * 246.15062 * 11 9 8 38 38 H 1.08995 * 108.69152 * 4.23817 * 11 9 8 39 39 H 1.09000 * 109.10152 * 73.12826 * 12 11 9 40 40 H 1.09005 * 109.09819 * 192.22120 * 12 11 9 41 41 H 1.08991 * 109.47326 * 55.54065 * 14 13 12 42 42 H 1.09004 * 109.47097 * 175.54057 * 14 13 12 43 43 H 0.97003 * 119.99899 * 0.02562 * 17 15 14 44 44 H 0.96999 * 120.00216 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.11746 * 175.80111 * 26 13 12 46 46 H 1.09001 * 107.96918 * 56.28217 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9962 -0.6596 -1.1423 5 6 2.0323 -0.7105 1.2305 6 8 2.5732 -0.0817 2.1153 7 7 1.8805 -2.0445 1.3475 8 6 1.2980 -3.1273 0.5376 9 6 2.3101 -4.0816 1.2046 10 1 1.8987 -5.0609 1.4493 11 6 3.6380 -4.1593 0.4740 12 6 4.8314 -3.8513 1.3581 13 7 4.6109 -2.6389 2.1484 14 6 5.8414 -2.2291 2.8381 15 6 6.2308 -3.2848 3.8405 16 8 5.6117 -4.3264 3.8958 17 7 7.2670 -3.0717 4.6756 18 6 7.6208 -4.0320 5.5879 19 1 7.0695 -4.9594 5.6371 20 6 8.6895 -3.8124 6.4485 21 7 9.3606 -2.6842 6.3883 22 14 9.1721 -5.1211 7.6911 23 1 9.5374 -6.3709 6.9771 24 1 10.3340 -4.6460 8.4843 25 1 8.0281 -5.3866 8.6000 26 6 3.5190 -2.8226 3.0891 27 6 2.2149 -3.0688 2.3416 28 1 1.3931 -3.2777 3.0264 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 0.2607 -3.3488 0.7889 36 1 1.4561 -3.0026 -0.5336 37 1 3.7545 -5.1638 0.0672 38 1 3.6244 -3.4482 -0.3519 39 1 5.0018 -4.6905 2.0324 40 1 5.7127 -3.7124 0.7318 41 1 6.6428 -2.1067 2.1096 42 1 5.6715 -1.2838 3.3535 43 1 7.7619 -2.2386 4.6317 44 1 10.1064 -2.5308 6.9893 45 1 3.4153 -1.9399 3.7201 46 1 3.7517 -3.6882 3.7094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221223868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:54 Heat of formation + Delta-G solvation = -91.670954 kcal Electronic energy + Delta-G solvation = -29758.509357 eV Core-core repulsion = 25598.223351 eV Total energy + Delta-G solvation = -4160.286007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.86631 -42.21643 -40.52015 -39.36883 -37.30115 -35.77979 -34.56362 -33.42385 -33.05692 -30.87854 -29.82179 -28.34983 -27.42734 -25.78446 -25.29796 -23.64253 -22.88801 -21.20943 -20.85636 -19.99609 -19.23636 -18.39984 -17.75352 -17.49021 -17.32631 -16.79070 -16.60735 -16.30821 -16.05980 -15.76415 -15.62291 -15.56194 -15.02141 -14.88021 -14.42617 -14.31883 -14.08733 -13.69995 -13.49394 -13.41844 -13.31382 -13.22608 -13.14173 -13.04432 -13.02267 -12.90481 -12.50970 -12.48735 -12.30665 -12.16078 -12.06690 -11.90408 -11.61029 -11.31779 -11.16031 -10.95963 -10.52588 -10.04523 -9.62001 -8.93350 -8.48848 -6.00511 1.35165 1.37635 1.49232 1.54628 1.75932 1.95268 2.25800 2.94201 3.13514 3.15637 3.19855 3.31468 3.47313 3.58563 3.79311 3.80320 3.98499 4.14206 4.30133 4.33477 4.41373 4.47184 4.51095 4.54432 4.55856 4.58938 4.64822 4.68901 4.74258 4.80490 4.85880 4.96794 5.04497 5.07867 5.09151 5.11261 5.17913 5.22219 5.35426 5.46764 5.88141 6.05033 6.20715 6.53028 6.81888 7.05972 7.10420 7.48779 8.02296 8.66035 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.003057 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.686569 B = 9156.014756 C = 9723.901630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 C -0.156 4.156 4 F -0.202 7.202 5 C 0.522 3.478 6 O -0.564 6.564 7 N -0.623 5.623 8 C 0.108 3.892 9 C -0.110 4.110 10 H 0.122 0.878 11 C -0.083 4.083 12 C 0.042 3.958 13 N -0.499 5.499 14 C 0.056 3.944 15 C 0.411 3.589 16 O -0.615 6.615 17 N -0.569 5.569 18 C -0.335 4.335 19 H 0.082 0.918 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.045 3.955 27 C 0.134 3.866 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.394 0.606 44 H 0.278 0.722 45 H 0.047 0.953 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 2.751 -16.050 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.089 3.911 3 C -0.214 4.214 4 F -0.182 7.182 5 C 0.310 3.690 6 O -0.443 6.443 7 N -0.357 5.357 8 C -0.013 4.013 9 C -0.129 4.129 10 H 0.140 0.860 11 C -0.121 4.121 12 C -0.086 4.086 13 N -0.221 5.221 14 C -0.076 4.076 15 C 0.198 3.802 16 O -0.503 6.503 17 N -0.206 5.206 18 C -0.465 4.465 19 H 0.100 0.900 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.819 3.181 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.084 4.084 27 C 0.031 3.969 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.227 0.773 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.499 3.078 -15.834 25.306 hybrid contribution 1.468 -0.505 1.582 2.217 sum -18.031 2.573 -14.252 23.127 Atomic orbital electron populations 1.22365 0.89020 1.05121 1.05583 1.21249 0.97997 0.92780 0.79111 1.22173 1.02035 0.92347 1.04831 1.92880 1.90609 1.82873 1.51866 1.20771 0.78933 0.80422 0.88838 1.90706 1.44250 1.65506 1.43795 1.49544 1.57780 1.04410 1.23920 1.23638 0.98458 0.81588 0.97626 1.22538 0.96463 0.98677 0.95237 0.85989 1.20709 0.91580 1.02476 0.97331 1.21869 0.98736 0.91772 0.96195 1.61619 1.03283 1.33873 1.23281 1.21989 0.94076 0.96274 0.95249 1.21967 0.82614 0.90207 0.85393 1.90371 1.55624 1.30220 1.74110 1.42154 1.28590 1.18311 1.31501 1.19666 1.14343 0.99127 1.13336 0.90033 1.26121 0.95648 0.99607 1.00018 1.69683 1.21378 1.25352 1.39737 0.84957 0.77936 0.77683 0.77563 1.19455 1.19515 1.19636 1.21777 0.91522 1.00484 0.94592 1.22516 0.95813 0.85722 0.92878 0.87125 0.89890 0.88094 0.90040 0.92890 0.88231 0.90046 0.86148 0.88876 0.89280 0.91790 0.93982 0.91990 0.87862 0.89489 0.77293 0.91223 0.93415 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.91 71.98 0.64 -1.41 16 2 C 0.11 2.25 1.42 -11.54 -0.02 2.24 16 3 C -0.16 -3.05 8.28 71.98 0.60 -2.45 16 4 F -0.20 -4.46 15.80 44.97 0.71 -3.75 16 5 C 0.52 14.70 6.96 87.66 0.61 15.31 16 6 O -0.56 -20.85 15.85 -3.03 -0.05 -20.90 16 7 N -0.62 -15.07 3.36 -857.31 -2.88 -17.94 16 8 C 0.11 1.63 6.90 81.63 0.56 2.19 16 9 C -0.11 -2.15 4.51 -10.91 -0.05 -2.20 16 10 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.08 -1.96 5.77 29.75 0.17 -1.78 16 12 C 0.04 1.40 5.00 85.97 0.43 1.83 16 13 N -0.50 -18.23 4.72 -910.48 -4.30 -22.52 16 14 C 0.06 2.25 5.83 85.56 0.50 2.75 16 15 C 0.41 20.19 7.18 87.66 0.63 20.82 16 16 O -0.62 -32.79 11.21 -3.09 -0.03 -32.83 16 17 N -0.57 -30.45 5.29 -306.98 -1.62 -32.07 16 18 C -0.34 -19.37 9.68 84.04 0.81 -18.55 16 19 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -51.26 13.05 21.66 0.28 -50.97 16 22 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.05 1.65 4.35 86.38 0.38 2.03 16 27 C 0.13 3.49 4.25 39.57 0.17 3.65 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.41 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.86 7.39 -2.39 -0.02 0.84 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.60 7.99 -2.39 -0.02 1.58 16 35 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.29 7.16 -2.39 -0.02 1.28 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.50 7.55 -2.39 -0.02 1.49 16 39 H 0.04 1.69 5.66 -2.39 -0.01 1.68 16 40 H 0.06 2.03 7.99 -2.38 -0.02 2.01 16 41 H 0.10 3.78 8.03 -2.39 -0.02 3.76 16 42 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.39 20.51 7.90 -92.71 -0.73 19.78 16 44 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.05 1.97 7.70 -2.39 -0.02 1.95 16 46 H 0.05 2.25 5.53 -2.39 -0.01 2.24 16 Total: -1.00 -73.89 366.34 0.31 -73.58 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.27 Total: 37.70 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 5.90 Total: 24.12 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -8.52 Total: -123.51 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -0.08 Total: -53.73 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.71 Total: -3.75 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.89 0.31 -73.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221223868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.086 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds