Wall clock time and date at job start Fri Apr 10 2020 14:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50701 * 119.99971 * 2 1 4 4 C 1.33118 * 120.00232 * 180.02562 * 2 1 3 5 5 F 1.35094 * 120.00236 * 179.97438 * 4 2 1 6 6 C 1.47294 * 119.99616 * 359.97438 * 4 2 1 7 7 O 1.21610 * 120.00520 * 353.38671 * 6 4 2 8 8 N 1.34780 * 120.00009 * 173.38071 * 6 4 2 9 9 C 1.46500 * 119.99938 * 2.92949 * 8 6 4 10 10 C 1.46500 * 120.00247 * 182.92507 * 8 6 4 11 11 C 1.52994 * 109.47324 * 90.00143 * 10 8 6 12 12 H 1.09005 * 112.96036 * 287.14946 * 11 10 8 13 13 C 1.53929 * 113.76017 * 155.49275 * 11 10 8 14 14 C 1.53937 * 86.34331 * 221.96450 * 13 11 10 15 15 N 1.47961 * 86.17733 * 23.72175 * 14 13 11 16 16 C 1.46896 * 110.99868 * 222.41676 * 15 14 13 17 17 C 1.50708 * 109.47201 * 269.36126 * 16 15 14 18 18 O 1.21288 * 119.99560 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00050 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99980 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00239 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99904 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99697 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47287 * 89.99954 * 24 22 20 26 26 H 1.48508 * 109.46745 * 209.99478 * 24 22 20 27 27 H 1.48490 * 109.47381 * 329.99592 * 24 22 20 28 28 H 1.09001 * 109.47077 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46875 * 119.99988 * 1 2 3 30 30 H 1.08998 * 109.46984 * 239.99917 * 1 2 3 31 31 H 1.08998 * 109.47197 * 90.00185 * 3 2 1 32 32 H 1.09007 * 109.47280 * 210.00124 * 3 2 1 33 33 H 1.09000 * 109.47088 * 329.99774 * 3 2 1 34 34 H 1.09002 * 109.47027 * 83.86578 * 9 8 6 35 35 H 1.08992 * 109.47392 * 203.87224 * 9 8 6 36 36 H 1.09004 * 109.46843 * 323.87327 * 9 8 6 37 37 H 1.09000 * 109.47010 * 210.00598 * 10 8 6 38 38 H 1.09005 * 109.47174 * 330.00384 * 10 8 6 39 39 H 1.08994 * 113.73853 * 336.32318 * 13 11 10 40 40 H 1.09001 * 113.73251 * 107.60821 * 13 11 10 41 41 H 1.08996 * 113.75910 * 138.04151 * 14 13 11 42 42 H 1.09002 * 113.75944 * 269.29279 * 14 13 11 43 43 H 1.09001 * 109.47632 * 29.36262 * 16 15 14 44 44 H 1.09001 * 109.47421 * 149.36534 * 16 15 14 45 45 H 0.97010 * 120.00033 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99962 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1528 -0.0005 5 9 3.5236 -1.1528 -0.0010 6 6 1.4362 -2.4284 -0.0005 7 8 0.2262 -2.4320 0.1212 8 7 2.1032 -3.5917 -0.1356 9 6 3.5659 -3.5921 -0.2179 10 6 1.3657 -4.8559 -0.2000 11 6 1.0281 -5.1757 -1.6575 12 1 0.2423 -4.5376 -2.0619 13 6 0.8107 -6.6752 -1.9291 14 6 1.6204 -6.4580 -3.2202 15 7 2.2154 -5.2906 -2.5330 16 6 2.3139 -4.1395 -3.4403 17 6 3.6494 -4.1626 -4.1381 18 8 4.4411 -5.0509 -3.9030 19 7 3.9641 -3.1962 -5.0233 20 6 5.1788 -3.2175 -5.6584 21 1 5.8838 -4.0085 -5.4492 22 6 5.5034 -2.2209 -6.5707 23 7 4.6458 -1.2583 -6.8249 24 14 7.1589 -2.2496 -7.4355 25 1 7.0445 -3.0230 -8.6981 26 1 7.5808 -0.8593 -7.7432 27 1 8.1674 -2.8891 -6.5530 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 2.4422 1.6198 1.0276 32 1 3.2130 1.1748 -0.5139 33 1 1.6715 2.0647 -0.5139 34 1 3.9864 -3.5680 0.7875 35 1 3.9008 -4.4938 -0.7303 36 1 3.8988 -2.7144 -0.7720 37 1 1.9789 -5.6558 0.2150 38 1 0.4442 -4.7686 0.3756 39 1 1.3022 -7.3276 -1.2075 40 1 -0.2314 -6.9426 -2.1046 41 1 2.3340 -7.2547 -3.4303 42 1 1.0085 -6.1967 -4.0836 43 1 1.5160 -4.1914 -4.1811 44 1 2.2189 -3.2166 -2.8681 45 1 3.3307 -2.4860 -5.2115 46 1 4.8723 -0.5628 -7.4620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233624413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:03 Heat of formation + Delta-G solvation = -49.952358 kcal Electronic energy + Delta-G solvation = -29500.985878 eV Core-core repulsion = 25342.508926 eV Total energy + Delta-G solvation = -4158.476952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.02015 -40.40843 -39.36953 -37.68345 -36.03080 -34.74635 -33.86818 -31.32827 -30.69413 -29.35541 -27.98604 -27.63468 -25.97027 -25.71438 -23.67104 -23.64894 -20.91938 -19.49292 -19.21736 -18.83640 -17.86468 -17.32429 -16.45930 -16.37111 -15.87223 -15.78526 -15.49761 -15.25041 -14.66625 -14.52886 -14.34467 -13.90980 -13.75587 -13.71340 -13.36525 -13.24166 -12.90261 -12.75330 -12.52162 -12.43023 -12.34834 -12.29888 -11.91801 -11.73663 -11.57151 -11.46501 -11.28730 -11.16245 -11.00468 -10.80064 -10.56762 -10.37807 -10.18603 -9.65695 -9.47281 -9.10988 -8.78513 -8.36741 -8.11483 -7.93088 -6.38894 -3.79561 1.07826 2.86217 3.02397 3.18916 3.27266 3.33249 3.92992 3.97354 4.09127 4.24640 4.49685 4.58448 4.73766 4.83898 5.05968 5.12068 5.15527 5.24401 5.31659 5.35241 5.44984 5.50285 5.55396 5.56958 5.67602 5.70956 5.71042 5.73031 5.77912 5.82106 5.84755 5.89425 5.99929 6.10663 6.24153 6.28435 6.32900 6.36150 6.53864 6.67567 7.23238 7.36597 7.57348 8.00384 8.08898 8.65095 9.21241 9.57943 10.10323 10.79044 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004496 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.406050 B = 6226.619387 C = 8188.099488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.075 4.075 3 C -0.126 4.126 4 C -0.023 4.023 5 F -0.129 7.129 6 C 0.544 3.456 7 O -0.530 6.530 8 N -0.593 5.593 9 C 0.057 3.943 10 C 0.138 3.862 11 C 0.007 3.993 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.010 3.990 15 N -0.439 5.439 16 C 0.014 3.986 17 C 0.449 3.551 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.390 0.610 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 0.056 14.195 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.182 4.182 4 C -0.045 4.045 5 F -0.108 7.108 6 C 0.333 3.667 7 O -0.410 6.410 8 N -0.324 5.324 9 C -0.085 4.085 10 C 0.015 3.985 11 C -0.104 4.104 12 H 0.097 0.903 13 C -0.174 4.174 14 C -0.119 4.119 15 N -0.162 5.162 16 C -0.118 4.118 17 C 0.234 3.766 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.223 0.777 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.367 -0.450 14.567 17.324 hybrid contribution 0.106 0.778 -1.236 1.464 sum -9.261 0.328 13.331 16.235 Atomic orbital electron populations 1.20898 0.88934 1.01735 1.04462 1.22720 0.97972 0.93715 0.93407 1.20940 1.00638 0.93608 1.03053 1.19367 0.77272 0.94410 1.13458 1.91392 1.28546 1.96663 1.94206 1.18281 0.87126 0.83615 0.77663 1.90783 1.12819 1.86525 1.50895 1.47665 1.08260 1.05762 1.70667 1.22490 0.77698 1.06600 1.01716 1.21448 0.97252 0.84812 0.94945 1.23943 0.93741 0.97036 0.95659 0.90316 1.23350 1.00320 0.95264 0.98465 1.23837 0.96879 0.95884 0.95308 1.68309 1.31861 1.02999 1.12987 1.22432 0.97641 0.95679 0.96063 1.19661 0.88569 0.84819 0.83579 1.90511 1.51395 1.37543 1.66375 1.41885 1.17304 1.24138 1.37136 1.19676 0.93436 1.10276 1.19225 0.87997 1.25240 0.99455 0.95484 0.97771 1.69615 1.35825 1.13463 1.35563 0.85882 0.81755 0.77308 0.79487 1.20476 1.20957 1.19421 0.92204 0.89949 0.89488 0.90137 0.90522 0.90411 0.93113 0.88852 0.89008 0.89671 0.89480 0.89050 0.91087 0.89040 0.91639 0.92854 0.90245 0.77681 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 8.33 36.01 0.30 -0.83 16 2 C -0.07 -0.90 6.12 -101.13 -0.62 -1.51 16 3 C -0.13 -1.23 9.78 36.01 0.35 -0.87 16 4 C -0.02 -0.32 7.11 -37.68 -0.27 -0.59 16 5 F -0.13 -1.89 12.54 2.25 0.03 -1.86 16 6 C 0.54 7.96 7.58 -12.58 -0.10 7.87 16 7 O -0.53 -8.17 12.70 5.27 0.07 -8.10 16 8 N -0.59 -8.26 2.82 -182.90 -0.52 -8.78 16 9 C 0.06 0.82 9.24 59.85 0.55 1.38 16 10 C 0.14 1.70 5.54 -4.04 -0.02 1.67 16 11 C 0.01 0.09 3.55 -66.66 -0.24 -0.15 16 12 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 13 C -0.14 -1.49 7.84 -25.80 -0.20 -1.70 16 14 C 0.01 0.14 7.95 -2.77 -0.02 0.12 16 15 N -0.44 -7.15 4.51 -232.15 -1.05 -8.20 16 16 C 0.01 0.26 5.28 -4.97 -0.03 0.23 16 17 C 0.45 10.74 7.83 -10.98 -0.09 10.66 16 18 O -0.58 -15.62 16.01 5.55 0.09 -15.53 16 19 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.51 7.94 -51.93 -0.41 0.09 16 29 H 0.08 1.00 7.41 -51.93 -0.38 0.62 16 30 H 0.09 0.99 7.05 -51.93 -0.37 0.63 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.83 7.55 -51.93 -0.39 0.44 16 33 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.50 7.40 -51.93 -0.38 1.12 16 36 H 0.09 1.47 5.38 -51.93 -0.28 1.19 16 37 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 38 H 0.09 1.02 7.38 -51.93 -0.38 0.63 16 39 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 43 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 44 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 45 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -31.84 379.86 -7.59 -39.43 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.97 Total: 11.62 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.61 Total: 8.29 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.90 Total: -55.78 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.16 Total: -23.63 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.84 -7.59 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233624413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.521 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds