Wall clock time and date at job start Fri Apr 10 2020 14:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50701 * 119.99971 * 2 1 4 4 C 1.33118 * 120.00232 * 180.02562 * 2 1 3 5 5 F 1.35094 * 120.00236 * 179.97438 * 4 2 1 6 6 C 1.47294 * 119.99616 * 359.97438 * 4 2 1 7 7 O 1.21610 * 120.00520 * 353.38671 * 6 4 2 8 8 N 1.34780 * 120.00009 * 173.38071 * 6 4 2 9 9 C 1.46500 * 119.99938 * 2.92949 * 8 6 4 10 10 C 1.46500 * 120.00247 * 182.92507 * 8 6 4 11 11 C 1.52994 * 109.47324 * 90.00143 * 10 8 6 12 12 H 1.09005 * 112.96036 * 287.14946 * 11 10 8 13 13 C 1.53929 * 113.76017 * 155.49275 * 11 10 8 14 14 C 1.53937 * 86.34331 * 221.96450 * 13 11 10 15 15 N 1.47961 * 86.17733 * 23.72175 * 14 13 11 16 16 C 1.46896 * 110.99868 * 222.41676 * 15 14 13 17 17 C 1.50708 * 109.47201 * 269.36126 * 16 15 14 18 18 O 1.21288 * 119.99560 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00050 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99980 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00239 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99904 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99697 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47287 * 89.99954 * 24 22 20 26 26 H 1.48508 * 109.46745 * 209.99478 * 24 22 20 27 27 H 1.48490 * 109.47381 * 329.99592 * 24 22 20 28 28 H 1.09001 * 109.47077 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46875 * 119.99988 * 1 2 3 30 30 H 1.08998 * 109.46984 * 239.99917 * 1 2 3 31 31 H 1.08998 * 109.47197 * 90.00185 * 3 2 1 32 32 H 1.09007 * 109.47280 * 210.00124 * 3 2 1 33 33 H 1.09000 * 109.47088 * 329.99774 * 3 2 1 34 34 H 1.09002 * 109.47027 * 83.86578 * 9 8 6 35 35 H 1.08992 * 109.47392 * 203.87224 * 9 8 6 36 36 H 1.09004 * 109.46843 * 323.87327 * 9 8 6 37 37 H 1.09000 * 109.47010 * 210.00598 * 10 8 6 38 38 H 1.09005 * 109.47174 * 330.00384 * 10 8 6 39 39 H 1.08994 * 113.73853 * 336.32318 * 13 11 10 40 40 H 1.09001 * 113.73251 * 107.60821 * 13 11 10 41 41 H 1.08996 * 113.75910 * 138.04151 * 14 13 11 42 42 H 1.09002 * 113.75944 * 269.29279 * 14 13 11 43 43 H 1.09001 * 109.47632 * 29.36262 * 16 15 14 44 44 H 1.09001 * 109.47421 * 149.36534 * 16 15 14 45 45 H 0.97010 * 120.00033 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99962 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1528 -0.0005 5 9 3.5236 -1.1528 -0.0010 6 6 1.4362 -2.4284 -0.0005 7 8 0.2262 -2.4320 0.1212 8 7 2.1032 -3.5917 -0.1356 9 6 3.5659 -3.5921 -0.2179 10 6 1.3657 -4.8559 -0.2000 11 6 1.0281 -5.1757 -1.6575 12 1 0.2423 -4.5376 -2.0619 13 6 0.8107 -6.6752 -1.9291 14 6 1.6204 -6.4580 -3.2202 15 7 2.2154 -5.2906 -2.5330 16 6 2.3139 -4.1395 -3.4403 17 6 3.6494 -4.1626 -4.1381 18 8 4.4411 -5.0509 -3.9030 19 7 3.9641 -3.1962 -5.0233 20 6 5.1788 -3.2175 -5.6584 21 1 5.8838 -4.0085 -5.4492 22 6 5.5034 -2.2209 -6.5707 23 7 4.6458 -1.2583 -6.8249 24 14 7.1589 -2.2496 -7.4355 25 1 7.0445 -3.0230 -8.6981 26 1 7.5808 -0.8593 -7.7432 27 1 8.1674 -2.8891 -6.5530 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 2.4422 1.6198 1.0276 32 1 3.2130 1.1748 -0.5139 33 1 1.6715 2.0647 -0.5139 34 1 3.9864 -3.5680 0.7875 35 1 3.9008 -4.4938 -0.7303 36 1 3.8988 -2.7144 -0.7720 37 1 1.9789 -5.6558 0.2150 38 1 0.4442 -4.7686 0.3756 39 1 1.3022 -7.3276 -1.2075 40 1 -0.2314 -6.9426 -2.1046 41 1 2.3340 -7.2547 -3.4303 42 1 1.0085 -6.1967 -4.0836 43 1 1.5160 -4.1914 -4.1811 44 1 2.2189 -3.2166 -2.8681 45 1 3.3307 -2.4860 -5.2115 46 1 4.8723 -0.5628 -7.4620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233624413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:02 Heat of formation + Delta-G solvation = -71.309208 kcal Electronic energy + Delta-G solvation = -29501.911980 eV Core-core repulsion = 25342.508926 eV Total energy + Delta-G solvation = -4159.403055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.07635 -41.57802 -40.58914 -39.52008 -37.06365 -35.94035 -35.76643 -33.32564 -32.12562 -30.46086 -28.90630 -28.60350 -27.49822 -27.06591 -25.31372 -24.71914 -21.94498 -21.10635 -20.55013 -19.92474 -19.87704 -18.41601 -17.75301 -17.49537 -17.42328 -17.07739 -16.67053 -16.48383 -16.35295 -15.87516 -15.71875 -15.52805 -15.08462 -14.85231 -14.67048 -14.25616 -14.16315 -13.92689 -13.77712 -13.64706 -13.53792 -13.30222 -13.22975 -12.97275 -12.93872 -12.68409 -12.64625 -12.44083 -12.34335 -12.26188 -12.14479 -11.89480 -11.73899 -11.50014 -10.72757 -10.43854 -10.10822 -10.01938 -9.75036 -9.40306 -8.46959 -5.95919 0.07104 1.36700 1.40136 1.53193 1.80133 1.94615 2.03566 2.27517 2.75706 3.04633 3.18465 3.36049 3.54906 3.60849 3.78504 3.86532 4.10700 4.15173 4.20016 4.23479 4.30632 4.32736 4.43241 4.45436 4.55882 4.60123 4.60765 4.75395 4.80897 4.83132 4.83542 4.89421 4.97523 5.03364 5.07356 5.20365 5.25796 5.38526 5.40439 5.42999 5.55844 5.90257 6.07404 6.25508 6.58907 6.90663 7.12059 7.54465 8.10376 8.70744 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004496 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.406050 B = 6226.619387 C = 8188.099488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.057 4.057 3 C -0.127 4.127 4 C -0.060 4.060 5 F -0.139 7.139 6 C 0.541 3.459 7 O -0.543 6.543 8 N -0.596 5.596 9 C 0.070 3.930 10 C 0.137 3.863 11 C 0.011 3.989 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.001 4.001 15 N -0.461 5.461 16 C 0.033 3.967 17 C 0.448 3.552 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.392 0.608 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 0.539 14.805 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 C -0.183 4.183 4 C -0.082 4.082 5 F -0.118 7.118 6 C 0.331 3.669 7 O -0.424 6.424 8 N -0.326 5.326 9 C -0.073 4.073 10 C 0.015 3.985 11 C -0.099 4.099 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.130 4.130 15 N -0.184 5.184 16 C -0.099 4.099 17 C 0.235 3.765 18 O -0.495 6.495 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.225 0.775 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.485 0.032 15.182 18.451 hybrid contribution 0.402 0.659 -1.396 1.595 sum -10.083 0.691 13.786 17.094 Atomic orbital electron populations 1.20905 0.87996 1.03329 1.03517 1.23152 0.98718 0.94046 0.90146 1.21048 0.99979 0.92900 1.04417 1.19514 0.77149 0.94971 1.16523 1.91365 1.29113 1.96719 1.94615 1.18421 0.87094 0.83977 0.77431 1.90765 1.13089 1.86767 1.51735 1.47722 1.07963 1.06347 1.70520 1.22283 0.78330 1.04581 1.02121 1.21592 0.97820 0.84472 0.94627 1.23985 0.92072 0.98641 0.95243 0.90681 1.23257 1.01469 0.93755 0.96249 1.23927 0.97152 0.94725 0.97160 1.68316 1.34254 1.02534 1.13278 1.22201 0.94375 0.97035 0.96326 1.20579 0.90028 0.83388 0.82512 1.90475 1.53122 1.38685 1.67238 1.41967 1.16915 1.24783 1.37784 1.19644 0.94412 1.10788 1.21120 0.90282 1.26036 1.02863 0.94630 0.97726 1.69681 1.37240 1.13690 1.35744 0.84938 0.77302 0.77881 0.78285 1.19597 1.19535 1.19705 0.89346 0.91245 0.89896 0.88073 0.91900 0.88358 0.91421 0.90665 0.90969 0.88366 0.88401 0.87680 0.88289 0.90590 0.91265 0.91498 0.90208 0.77488 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 8.33 71.24 0.59 -1.44 16 2 C -0.06 -1.31 6.12 -17.60 -0.11 -1.42 16 3 C -0.13 -2.25 9.78 71.24 0.70 -1.56 16 4 C -0.06 -1.66 7.11 23.50 0.17 -1.49 16 5 F -0.14 -4.16 12.54 44.97 0.56 -3.59 16 6 C 0.54 15.67 7.58 86.62 0.66 16.33 16 7 O -0.54 -16.30 12.70 -4.06 -0.05 -16.35 16 8 N -0.60 -16.37 2.82 -850.83 -2.40 -18.77 16 9 C 0.07 2.04 9.24 127.77 1.18 3.22 16 10 C 0.14 3.16 5.54 86.38 0.48 3.64 16 11 C 0.01 0.27 3.55 45.01 0.16 0.43 16 12 H 0.08 1.93 7.93 -2.38 -0.02 1.91 16 13 C -0.11 -2.12 7.84 31.24 0.24 -1.88 16 14 C 0.00 -0.03 7.95 86.41 0.69 0.66 16 15 N -0.46 -14.86 4.51 -888.40 -4.01 -18.87 16 16 C 0.03 1.23 5.28 85.56 0.45 1.68 16 17 C 0.45 22.10 7.83 87.66 0.69 22.79 16 18 O -0.61 -34.31 16.01 -3.05 -0.05 -34.36 16 19 N -0.58 -30.69 5.29 -306.98 -1.62 -32.32 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H 0.09 1.25 7.94 -2.39 -0.02 1.23 16 29 H 0.07 1.62 7.41 -2.39 -0.02 1.60 16 30 H 0.08 1.78 7.05 -2.39 -0.02 1.76 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.32 7.55 -2.38 -0.02 1.30 16 33 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.48 7.40 -2.39 -0.02 2.46 16 36 H 0.07 2.42 5.38 -2.38 -0.01 2.41 16 37 H 0.10 2.00 7.84 -2.39 -0.02 1.98 16 38 H 0.10 2.08 7.38 -2.38 -0.02 2.06 16 39 H 0.10 1.80 7.94 -2.39 -0.02 1.78 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 1.86 7.48 -2.39 -0.02 1.84 16 43 H 0.07 2.31 7.38 -2.39 -0.02 2.30 16 44 H 0.08 2.98 8.08 -2.39 -0.02 2.96 16 45 H 0.39 20.19 7.90 -92.70 -0.73 19.45 16 46 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -69.98 379.86 2.18 -67.79 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.27 Total: 38.96 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 7.18 Total: 22.41 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -7.75 Total: -120.41 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.10 Total: -50.71 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.56 Total: -3.59 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.98 2.18 -67.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233624413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.517 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds