Wall clock time and date at job start Fri Apr 10 2020 14:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48501 * 109.47488 * 274.07236 * 3 2 1 5 5 H 1.48502 * 109.46661 * 34.07294 * 3 2 1 6 6 H 1.48495 * 109.47274 * 154.06656 * 3 2 1 7 7 C 1.38820 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99301 * 197.51853 * 7 2 1 9 9 N 1.36927 * 120.00081 * 17.51930 * 7 2 1 10 10 C 1.46925 * 120.63534 * 27.94124 * 9 7 2 11 11 C 1.53194 * 108.77112 * 126.41528 * 10 9 7 12 12 C 1.53035 * 109.31618 * 54.64135 * 11 10 9 13 13 N 1.46493 * 109.46185 * 178.61035 * 12 11 10 14 14 C 1.34783 * 119.99914 * 204.99972 * 13 12 11 15 15 O 1.21345 * 119.99845 * 0.02562 * 14 13 12 16 16 C 1.49452 * 119.99914 * 180.02562 * 14 13 12 17 17 O 1.21346 * 119.99834 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99774 * 180.02562 * 16 14 13 19 19 C 1.47018 * 125.64938 * 359.68517 * 18 16 14 20 20 C 1.54312 * 107.27466 * 180.97104 * 19 18 16 21 21 C 1.55149 * 102.86556 * 22.52859 * 20 19 18 22 22 H 1.09003 * 111.00554 * 82.37918 * 21 20 19 23 23 C 1.53002 * 111.03848 * 206.21469 * 21 20 19 24 24 F 1.39900 * 109.47136 * 293.66633 * 23 21 20 25 25 C 1.47421 * 125.64645 * 179.97438 * 18 16 14 26 26 C 1.53045 * 109.53741 * 298.63444 * 12 11 10 27 27 C 1.46931 * 120.62894 * 207.97246 * 9 7 2 28 28 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58069 * 6.63569 * 10 9 7 30 30 H 1.08993 * 109.59457 * 246.20496 * 10 9 7 31 31 H 1.08998 * 109.49998 * 294.68381 * 11 10 9 32 32 H 1.09008 * 109.49057 * 174.59157 * 11 10 9 33 33 H 1.09012 * 109.45842 * 58.64925 * 12 11 10 34 34 H 0.96996 * 120.00031 * 25.00199 * 13 12 11 35 35 H 1.08999 * 109.88609 * 300.51492 * 19 18 16 36 36 H 1.09001 * 109.88003 * 61.68324 * 19 18 16 37 37 H 1.09001 * 110.92590 * 264.11030 * 20 19 18 38 38 H 1.09009 * 110.74402 * 140.85931 * 20 19 18 39 39 H 1.08996 * 109.47525 * 53.67024 * 23 21 20 40 40 H 1.09003 * 109.46910 * 173.66830 * 23 21 20 41 41 H 1.09000 * 110.36933 * 274.66747 * 25 18 16 42 42 H 1.08997 * 110.36842 * 36.88171 * 25 18 16 43 43 H 1.09002 * 109.49409 * 181.31384 * 26 12 11 44 44 H 1.08996 * 109.49258 * 301.41307 * 26 12 11 45 45 H 1.09001 * 109.58574 * 113.79627 * 27 9 7 46 46 H 1.09003 * 109.70391 * 353.43979 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4116 2.0962 -1.3965 5 1 1.4933 2.6262 0.7844 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2810 9 7 1.3733 -2.3604 -0.3580 10 6 0.2346 -2.3328 -1.2862 11 6 0.5137 -3.3038 -2.4378 12 6 0.8262 -4.6891 -1.8675 13 7 1.0610 -5.6280 -2.9671 14 6 0.8577 -6.9475 -2.7817 15 8 0.4797 -7.3575 -1.7040 16 6 1.0979 -7.9054 -3.9034 17 8 1.4755 -7.4952 -4.9812 18 7 0.8941 -9.2247 -3.7181 19 6 0.4448 -9.8551 -2.4683 20 6 0.3773 -11.3760 -2.7206 21 6 1.3414 -11.5702 -3.9206 22 1 2.3768 -11.6267 -3.5847 23 6 0.9634 -12.8099 -4.7338 24 9 1.1704 -13.9565 -3.9594 25 6 1.0906 -10.2753 -4.7335 26 6 2.0764 -4.6105 -0.9882 27 6 1.8150 -3.6544 0.1798 28 1 -0.4850 0.8400 0.0004 29 1 0.1092 -1.3245 -1.6807 30 1 -0.6713 -2.6379 -0.7625 31 1 1.3665 -2.9474 -3.0156 32 1 -0.3631 -3.3650 -3.0825 33 1 -0.0173 -5.0342 -1.2693 34 1 1.3629 -5.3002 -3.8287 35 1 1.1545 -9.6412 -1.6691 36 1 -0.5433 -9.4817 -2.1991 37 1 -0.6347 -11.6821 -2.9855 38 1 0.7300 -11.9279 -1.8493 39 1 -0.0864 -12.7499 -5.0209 40 1 1.5827 -12.8596 -5.6294 41 1 0.1968 -10.3805 -5.3485 42 1 1.9541 -10.0436 -5.3570 43 1 2.3117 -5.6020 -0.6012 44 1 2.9144 -4.2418 -1.5796 45 1 1.0379 -4.0672 0.8231 46 1 2.7317 -3.5200 0.7542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262122400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:38 Heat of formation + Delta-G solvation = -98.553637 kcal Electronic energy + Delta-G solvation = -28097.147257 eV Core-core repulsion = 23936.562795 eV Total energy + Delta-G solvation = -4160.584462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.07357 -40.91399 -39.23956 -37.88031 -37.34759 -34.62099 -32.94368 -32.14983 -30.22596 -30.05279 -29.52725 -27.21899 -25.43600 -24.22783 -22.92040 -22.29187 -21.47514 -21.07156 -20.06960 -19.25976 -17.99154 -17.27238 -16.94587 -16.65006 -16.31435 -16.15506 -15.73506 -15.40202 -14.88509 -14.74931 -14.41474 -14.13041 -13.93906 -13.78907 -13.58335 -13.32252 -13.09414 -12.99096 -12.65265 -12.58006 -12.44304 -11.99072 -11.69331 -11.55098 -11.50947 -11.19605 -11.16273 -11.06153 -10.88328 -10.76375 -10.52847 -10.33659 -10.08251 -9.86723 -9.70958 -9.44428 -9.12713 -8.86623 -8.49298 -6.73030 -5.82554 -3.24618 1.38106 2.13519 3.17458 3.35408 3.38364 3.43912 3.45168 3.75801 3.96315 4.05093 4.38392 4.47418 4.47438 4.57166 4.76112 4.81082 4.93045 5.12131 5.18940 5.26073 5.35084 5.39986 5.43773 5.49390 5.50343 5.53780 5.72018 5.77730 5.82160 6.00820 6.14088 6.24225 6.44757 6.46757 6.51896 6.69691 6.75575 6.88841 6.93499 7.26329 7.26955 7.56712 7.66278 7.77627 8.04356 8.41272 9.17445 9.80500 10.37147 11.26475 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.040281 B = 0.002104 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.944923 B =13302.545050 C =13519.170294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.148 4.148 12 C 0.149 3.851 13 N -0.690 5.690 14 C 0.505 3.495 15 O -0.519 6.519 16 C 0.522 3.478 17 O -0.522 6.522 18 N -0.595 5.595 19 C 0.108 3.892 20 C -0.129 4.129 21 C -0.139 4.139 22 H 0.099 0.901 23 C 0.075 3.925 24 F -0.214 7.214 25 C 0.113 3.887 26 C -0.140 4.140 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.093 0.907 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -23.785 -10.086 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.341 5.341 14 C 0.285 3.715 15 O -0.395 6.395 16 C 0.306 3.694 17 O -0.398 6.398 18 N -0.330 5.330 19 C -0.015 4.015 20 C -0.167 4.167 21 C -0.159 4.159 22 H 0.118 0.882 23 C 0.019 3.981 24 F -0.195 7.195 25 C -0.010 4.010 26 C -0.180 4.180 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.065 -23.604 -9.839 25.573 hybrid contribution 0.560 0.931 -0.408 1.161 sum 0.625 -22.673 -10.247 24.889 Atomic orbital electron populations 1.70026 1.05259 1.25584 1.53824 1.25059 0.95305 0.98494 1.00821 0.86260 0.79176 0.83642 0.77608 1.21455 1.21780 1.20379 1.19205 0.92819 0.84810 1.41403 0.91555 1.44103 1.36295 1.01564 1.49564 1.20755 0.88993 0.98032 0.87415 1.22574 1.00918 0.94260 1.01031 1.21243 0.98922 0.88323 0.86852 1.46218 1.65449 1.05422 1.17015 1.19844 0.79780 0.83929 0.87956 1.90748 1.45087 1.77644 1.26025 1.20140 0.78608 0.81958 0.88722 1.90760 1.45293 1.77167 1.26582 1.48192 1.65357 1.05046 1.14406 1.22217 1.01861 0.91380 0.86016 1.22803 0.99914 0.95386 0.98607 1.23033 1.02081 0.93885 0.96883 0.88231 1.21852 1.02851 0.80577 0.92784 1.92787 1.96718 1.52166 1.77815 1.22194 1.02644 0.85107 0.91005 1.22406 0.97011 0.99736 0.98872 1.20865 0.98025 0.86488 0.92493 0.93569 0.88898 0.95959 0.91864 0.92479 0.89552 0.75657 0.89886 0.89923 0.90097 0.89186 0.90236 0.90197 0.90491 0.89479 0.92651 0.92047 0.96083 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.22 55.49 0.62 -25.16 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 10 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 11 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 12 C 0.15 2.54 2.42 -67.89 -0.16 2.37 16 13 N -0.69 -10.19 5.07 -54.19 -0.27 -10.46 16 14 C 0.51 7.45 7.82 -11.58 -0.09 7.36 16 15 O -0.52 -8.42 13.79 5.50 0.08 -8.34 16 16 C 0.52 6.99 7.91 -11.59 -0.09 6.89 16 17 O -0.52 -7.87 16.73 5.50 0.09 -7.78 16 18 N -0.60 -6.25 3.33 -171.03 -0.57 -6.82 16 19 C 0.11 0.97 5.48 -3.07 -0.02 0.96 16 20 C -0.13 -0.79 6.34 -24.91 -0.16 -0.95 16 21 C -0.14 -0.78 3.39 -88.46 -0.30 -1.08 16 22 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 23 C 0.07 0.33 6.97 37.16 0.26 0.59 16 24 F -0.21 -1.60 17.27 2.25 0.04 -1.56 16 25 C 0.11 0.83 6.38 -2.52 -0.02 0.81 16 26 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 27 C 0.15 3.10 6.51 -3.71 -0.02 3.08 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.09 1.59 7.58 -51.92 -0.39 1.20 16 34 H 0.41 5.54 8.07 -40.82 -0.33 5.21 16 35 H 0.08 0.84 7.59 -51.93 -0.39 0.44 16 36 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 37 H 0.08 0.42 8.02 -51.93 -0.42 0.00 16 38 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.08 0.25 8.11 -51.93 -0.42 -0.17 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 42 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -31.40 372.13 -8.37 -39.78 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.27 Total: 1.83 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.15 Total: 11.56 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.74 Total: -57.50 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.17 Total: -16.12 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.40 -8.37 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262122400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.778 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds