Wall clock time and date at job start Fri Apr 10 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48501 * 109.47488 * 274.07236 * 3 2 1 5 5 H 1.48502 * 109.46661 * 34.07294 * 3 2 1 6 6 H 1.48495 * 109.47274 * 154.06656 * 3 2 1 7 7 C 1.38820 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99301 * 197.51853 * 7 2 1 9 9 N 1.36927 * 120.00081 * 17.51930 * 7 2 1 10 10 C 1.46925 * 120.63534 * 27.94124 * 9 7 2 11 11 C 1.53194 * 108.77112 * 126.41528 * 10 9 7 12 12 C 1.53035 * 109.31618 * 54.64135 * 11 10 9 13 13 N 1.46493 * 109.46185 * 178.61035 * 12 11 10 14 14 C 1.34783 * 119.99914 * 204.99972 * 13 12 11 15 15 O 1.21345 * 119.99845 * 0.02562 * 14 13 12 16 16 C 1.49452 * 119.99914 * 180.02562 * 14 13 12 17 17 O 1.21346 * 119.99834 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99774 * 180.02562 * 16 14 13 19 19 C 1.47018 * 125.64938 * 359.68517 * 18 16 14 20 20 C 1.54312 * 107.27466 * 180.97104 * 19 18 16 21 21 C 1.55149 * 102.86556 * 22.52859 * 20 19 18 22 22 H 1.09003 * 111.00554 * 82.37918 * 21 20 19 23 23 C 1.53002 * 111.03848 * 206.21469 * 21 20 19 24 24 F 1.39900 * 109.47136 * 293.66633 * 23 21 20 25 25 C 1.47421 * 125.64645 * 179.97438 * 18 16 14 26 26 C 1.53045 * 109.53741 * 298.63444 * 12 11 10 27 27 C 1.46931 * 120.62894 * 207.97246 * 9 7 2 28 28 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58069 * 6.63569 * 10 9 7 30 30 H 1.08993 * 109.59457 * 246.20496 * 10 9 7 31 31 H 1.08998 * 109.49998 * 294.68381 * 11 10 9 32 32 H 1.09008 * 109.49057 * 174.59157 * 11 10 9 33 33 H 1.09012 * 109.45842 * 58.64925 * 12 11 10 34 34 H 0.96996 * 120.00031 * 25.00199 * 13 12 11 35 35 H 1.08999 * 109.88609 * 300.51492 * 19 18 16 36 36 H 1.09001 * 109.88003 * 61.68324 * 19 18 16 37 37 H 1.09001 * 110.92590 * 264.11030 * 20 19 18 38 38 H 1.09009 * 110.74402 * 140.85931 * 20 19 18 39 39 H 1.08996 * 109.47525 * 53.67024 * 23 21 20 40 40 H 1.09003 * 109.46910 * 173.66830 * 23 21 20 41 41 H 1.09000 * 110.36933 * 274.66747 * 25 18 16 42 42 H 1.08997 * 110.36842 * 36.88171 * 25 18 16 43 43 H 1.09002 * 109.49409 * 181.31384 * 26 12 11 44 44 H 1.08996 * 109.49258 * 301.41307 * 26 12 11 45 45 H 1.09001 * 109.58574 * 113.79627 * 27 9 7 46 46 H 1.09003 * 109.70391 * 353.43979 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4116 2.0962 -1.3965 5 1 1.4933 2.6262 0.7844 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2810 9 7 1.3733 -2.3604 -0.3580 10 6 0.2346 -2.3328 -1.2862 11 6 0.5137 -3.3038 -2.4378 12 6 0.8262 -4.6891 -1.8675 13 7 1.0610 -5.6280 -2.9671 14 6 0.8577 -6.9475 -2.7817 15 8 0.4797 -7.3575 -1.7040 16 6 1.0979 -7.9054 -3.9034 17 8 1.4755 -7.4952 -4.9812 18 7 0.8941 -9.2247 -3.7181 19 6 0.4448 -9.8551 -2.4683 20 6 0.3773 -11.3760 -2.7206 21 6 1.3414 -11.5702 -3.9206 22 1 2.3768 -11.6267 -3.5847 23 6 0.9634 -12.8099 -4.7338 24 9 1.1704 -13.9565 -3.9594 25 6 1.0906 -10.2753 -4.7335 26 6 2.0764 -4.6105 -0.9882 27 6 1.8150 -3.6544 0.1798 28 1 -0.4850 0.8400 0.0004 29 1 0.1092 -1.3245 -1.6807 30 1 -0.6713 -2.6379 -0.7625 31 1 1.3665 -2.9474 -3.0156 32 1 -0.3631 -3.3650 -3.0825 33 1 -0.0173 -5.0342 -1.2693 34 1 1.3629 -5.3002 -3.8287 35 1 1.1545 -9.6412 -1.6691 36 1 -0.5433 -9.4817 -2.1991 37 1 -0.6347 -11.6821 -2.9855 38 1 0.7300 -11.9279 -1.8493 39 1 -0.0864 -12.7499 -5.0209 40 1 1.5827 -12.8596 -5.6294 41 1 0.1968 -10.3805 -5.3485 42 1 1.9541 -10.0436 -5.3570 43 1 2.3117 -5.6020 -0.6012 44 1 2.9144 -4.2418 -1.5796 45 1 1.0379 -4.0672 0.8231 46 1 2.7317 -3.5200 0.7542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262122400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:37 Heat of formation + Delta-G solvation = -118.814893 kcal Electronic energy + Delta-G solvation = -28098.025851 eV Core-core repulsion = 23936.562795 eV Total energy + Delta-G solvation = -4161.463056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.52399 -41.95686 -40.33620 -38.93769 -38.72663 -36.15790 -34.02133 -33.58267 -31.87157 -31.27136 -30.66545 -28.08743 -26.96793 -25.29872 -24.08345 -23.88368 -22.81231 -21.63344 -21.34446 -20.66137 -19.13736 -18.51894 -18.17463 -17.69239 -17.09346 -17.02005 -16.68494 -16.57188 -16.16966 -15.89886 -15.46970 -15.39096 -15.22195 -15.04497 -14.80120 -14.59915 -14.27364 -14.14148 -14.10489 -13.74413 -13.27843 -13.21039 -13.04139 -12.77939 -12.62185 -12.53962 -12.43088 -12.23653 -12.05808 -12.03346 -11.89140 -11.66484 -11.60363 -11.50892 -11.38737 -10.67315 -10.57027 -10.23484 -9.91322 -8.72570 -7.88920 -5.33906 0.27940 1.14934 1.48217 1.49623 1.58646 2.06290 2.36523 2.51394 3.13880 3.27271 3.36750 3.42897 3.61429 3.64927 3.82309 3.97390 4.12261 4.16775 4.21695 4.26713 4.33501 4.42456 4.44740 4.61473 4.62742 4.68983 4.72382 4.81072 4.85676 4.89575 4.92733 4.94282 5.00648 5.11348 5.11542 5.24292 5.27062 5.33005 5.45207 5.63850 5.68697 5.93703 6.16603 6.38253 6.59245 6.89129 7.13578 7.83082 8.35406 9.18269 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.040281 B = 0.002104 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.944923 B =13302.545050 C =13519.170294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.179 3.821 11 C -0.132 4.132 12 C 0.162 3.838 13 N -0.684 5.684 14 C 0.505 3.495 15 O -0.535 6.535 16 C 0.523 3.477 17 O -0.543 6.543 18 N -0.590 5.590 19 C 0.104 3.896 20 C -0.122 4.122 21 C -0.129 4.129 22 H 0.096 0.904 23 C 0.073 3.927 24 F -0.231 7.231 25 C 0.108 3.892 26 C -0.126 4.126 27 C 0.146 3.854 28 H 0.251 0.749 29 H 0.063 0.937 30 H 0.001 0.999 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.416 0.584 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.014 0.986 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -25.634 -11.454 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.171 4.171 12 C 0.058 3.942 13 N -0.336 5.336 14 C 0.286 3.714 15 O -0.413 6.413 16 C 0.306 3.694 17 O -0.421 6.421 18 N -0.324 5.324 19 C -0.018 4.018 20 C -0.160 4.160 21 C -0.149 4.149 22 H 0.114 0.886 23 C 0.018 3.982 24 F -0.212 7.212 25 C -0.013 4.013 26 C -0.166 4.166 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.019 0.981 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.750 -25.518 -11.218 27.885 hybrid contribution 0.325 1.413 0.076 1.452 sum 1.076 -24.105 -11.142 26.577 Atomic orbital electron populations 1.70174 1.06616 1.25948 1.55255 1.25802 0.96059 1.01506 1.01169 0.85249 0.78168 0.79561 0.77430 1.21143 1.22295 1.19360 1.19511 0.93056 0.85935 1.40736 0.91484 1.44360 1.36430 1.02188 1.50350 1.20560 0.87994 0.97679 0.88459 1.22303 1.02062 0.93586 0.99197 1.20878 0.98037 0.88119 0.87182 1.45971 1.65623 1.05309 1.16685 1.20159 0.79068 0.83970 0.88241 1.90744 1.45687 1.77949 1.26882 1.19744 0.79131 0.82728 0.87836 1.90752 1.46796 1.77668 1.26913 1.48321 1.63626 1.04672 1.15739 1.22286 1.00864 0.93400 0.85204 1.22796 1.01048 0.92891 0.99219 1.22959 1.01796 0.93689 0.96438 0.88588 1.22014 1.04488 0.78987 0.92669 1.92756 1.96893 1.53120 1.78418 1.22443 1.03572 0.84653 0.90628 1.22208 0.97386 0.99233 0.97732 1.20960 0.97673 0.85688 0.93715 0.94002 0.91871 0.98135 0.91354 0.90398 0.90876 0.74675 0.91162 0.90771 0.88604 0.88549 0.88364 0.88340 0.88624 0.89521 0.91531 0.91733 0.96799 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 11.22 21.65 0.24 -54.42 16 2 C -0.05 -2.76 4.90 84.86 0.42 -2.34 16 3 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.26 -14.28 9.58 84.04 0.81 -13.47 16 8 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -30.32 2.99 -699.09 -2.09 -32.42 16 10 C 0.18 8.44 5.31 86.36 0.46 8.90 16 11 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16 12 C 0.16 5.36 2.42 45.02 0.11 5.47 16 13 N -0.68 -19.32 5.07 -443.73 -2.25 -21.57 16 14 C 0.51 14.37 7.82 87.27 0.68 15.06 16 15 O -0.54 -17.01 13.79 -3.23 -0.04 -17.05 16 16 C 0.52 13.32 7.91 87.27 0.69 14.01 16 17 O -0.54 -15.61 16.73 -3.23 -0.05 -15.67 16 18 N -0.59 -11.45 3.33 -813.37 -2.71 -14.15 16 19 C 0.10 1.76 5.48 86.73 0.48 2.23 16 20 C -0.12 -1.21 6.34 31.78 0.20 -1.01 16 21 C -0.13 -1.13 3.39 -9.40 -0.03 -1.16 16 22 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 23 C 0.07 0.43 6.97 71.98 0.50 0.93 16 24 F -0.23 -2.90 17.27 44.97 0.78 -2.12 16 25 C 0.11 1.32 6.38 86.86 0.55 1.87 16 26 C -0.13 -4.34 5.65 30.67 0.17 -4.17 16 27 C 0.15 6.11 6.51 86.36 0.56 6.67 16 28 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.06 3.35 6.06 -2.39 -0.01 3.33 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.07 2.67 7.58 -2.38 -0.02 2.65 16 34 H 0.42 10.62 8.07 -92.71 -0.75 9.87 16 35 H 0.07 1.38 7.59 -2.39 -0.02 1.36 16 36 H 0.07 1.39 7.68 -2.39 -0.02 1.37 16 37 H 0.10 0.71 8.02 -2.39 -0.02 0.69 16 38 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 39 H 0.10 0.24 8.11 -2.39 -0.02 0.22 16 40 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 41 H 0.10 0.86 8.04 -2.39 -0.02 0.84 16 42 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 Total: -1.00 -68.07 372.13 1.91 -66.16 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.24 Total: 16.29 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 5.77 Total: 28.46 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -6.81 Total: -122.56 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.07 1.91 -66.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262122400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.655 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds