Wall clock time and date at job start Fri Apr 10 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99777 * 2 1 4 4 C 1.52996 * 109.46907 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47511 * 64.99535 * 4 3 2 6 6 C 1.46226 * 124.85932 * 270.33253 * 5 4 3 7 7 N 1.46797 * 108.05883 * 180.17135 * 6 5 4 8 8 C 1.34773 * 127.03287 * 179.84437 * 7 6 5 9 9 O 1.21593 * 119.99894 * 359.70675 * 8 7 6 10 10 N 1.34777 * 120.00097 * 179.43547 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27545 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46866 * 299.99525 * 12 11 10 14 14 C 1.52994 * 109.47172 * 59.99462 * 12 11 10 15 15 C 1.53000 * 109.46988 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.46983 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99624 * 359.97438 * 16 15 12 18 18 C 1.37872 * 119.99634 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00657 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99703 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47214 * 90.00059 * 20 18 16 22 22 H 1.48501 * 109.47474 * 210.00166 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00544 * 20 18 16 24 24 C 1.46985 * 105.93657 * 359.57723 * 7 6 5 25 25 C 1.34309 * 124.85272 * 90.02426 * 5 4 3 26 26 O 1.21279 * 125.42080 * 0.02562 * 25 5 4 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47198 * 300.00309 * 1 2 3 29 29 H 1.08999 * 109.47037 * 60.00456 * 1 2 3 30 30 H 1.08994 * 109.47047 * 60.00137 * 3 2 1 31 31 H 1.09000 * 109.46874 * 299.99338 * 3 2 1 32 32 H 1.09004 * 109.47124 * 304.99473 * 4 3 2 33 33 H 1.08997 * 109.47373 * 185.00239 * 4 3 2 34 34 H 1.09006 * 109.88306 * 60.43473 * 6 5 4 35 35 H 1.08999 * 109.62137 * 299.75051 * 6 5 4 36 36 H 0.97000 * 119.99736 * 0.26819 * 10 8 7 37 37 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 38 38 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 39 39 H 1.09007 * 109.47177 * 60.00009 * 13 12 11 40 40 H 1.08994 * 109.47297 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.47361 * 300.00353 * 13 12 11 42 42 H 1.09006 * 109.47135 * 60.00046 * 14 12 11 43 43 H 1.09001 * 109.47144 * 179.97438 * 14 12 11 44 44 H 1.08998 * 109.47717 * 300.00195 * 14 12 11 45 45 H 1.08998 * 109.46983 * 299.99930 * 15 12 11 46 46 H 1.08997 * 109.47123 * 59.99717 * 15 12 11 47 47 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 48 48 H 1.09002 * 110.03900 * 119.53966 * 24 7 6 49 49 H 1.09000 * 110.04150 * 240.98897 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1346 -0.8740 -1.4620 7 7 4.5935 -1.0853 -2.8403 8 6 4.8634 -2.2646 -3.4342 9 8 4.7369 -3.3016 -2.8120 10 7 5.2682 -2.2950 -4.7193 11 6 5.5557 -3.5774 -5.3667 12 6 5.9920 -3.3323 -6.8126 13 6 4.8701 -2.6190 -7.5698 14 6 7.2498 -2.4613 -6.8251 15 6 6.2929 -4.6716 -7.4884 16 6 6.7221 -4.4302 -8.9127 17 1 6.7745 -3.4224 -9.2975 18 6 7.0477 -5.4959 -9.7245 19 7 6.9834 -6.7232 -9.2562 20 14 7.5803 -5.1967 -11.4898 21 1 9.0549 -5.0280 -11.5402 22 1 7.1859 -6.3565 -12.3293 23 1 6.9238 -3.9678 -12.0034 24 6 4.6923 0.2520 -3.4422 25 6 4.2855 1.2353 -2.3742 26 8 4.2448 2.4402 -2.5065 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8514 0.5684 0.8410 33 1 3.9785 2.1766 0.0890 34 1 3.1803 -1.3784 -1.3100 35 1 4.8737 -1.2661 -0.7634 36 1 5.3691 -1.4677 -5.2157 37 1 6.3546 -4.0858 -4.8269 38 1 4.6595 -4.1977 -5.3581 39 1 4.6561 -1.6648 -7.0882 40 1 5.1807 -2.4448 -8.6000 41 1 3.9740 -3.2395 -7.5609 42 1 8.0491 -2.9694 -6.2855 43 1 7.5608 -2.2871 -7.8551 44 1 7.0359 -1.5072 -6.3434 45 1 7.0923 -5.1793 -6.9488 46 1 5.3971 -5.2924 -7.4795 47 1 7.2128 -7.4729 -9.8272 48 1 5.7180 0.4453 -3.7566 49 1 4.0190 0.3280 -4.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341571210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:25 Heat of formation + Delta-G solvation = -119.091791 kcal Electronic energy + Delta-G solvation = -28582.641575 eV Core-core repulsion = 24544.626817 eV Total energy + Delta-G solvation = -4038.014758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.17468 -40.69135 -38.85828 -38.78442 -37.68250 -35.56505 -35.08243 -33.83167 -31.27852 -29.56823 -29.08418 -27.96502 -27.92412 -27.21662 -25.95928 -24.54005 -24.08049 -21.54938 -21.10379 -20.20088 -19.07049 -18.32758 -18.08378 -17.55508 -17.49248 -17.17055 -16.60503 -16.57888 -16.45999 -16.24170 -15.76859 -15.41158 -15.31403 -15.23189 -14.70248 -14.52696 -14.32530 -14.11251 -13.91570 -13.85853 -13.64958 -13.43905 -13.15481 -12.90486 -12.85052 -12.70240 -12.55685 -12.29816 -12.19903 -12.16037 -11.95043 -11.70426 -11.50284 -11.20379 -10.96386 -10.82699 -10.67600 -10.52127 -10.48118 -10.11533 -9.54378 -8.11111 -6.18279 1.06962 1.25041 1.44613 1.44969 1.55026 1.83217 1.99345 2.46169 2.80070 2.82058 3.07181 3.23592 3.83655 3.97034 3.99773 4.12898 4.17444 4.23532 4.25926 4.29195 4.33960 4.41394 4.49590 4.53528 4.54938 4.61919 4.72458 4.76025 4.77300 4.82324 4.86305 5.00270 5.12098 5.16379 5.16587 5.39731 5.49409 5.55020 5.57499 5.61280 5.80231 5.84620 5.85705 5.93767 6.16662 6.34215 6.77997 6.84515 6.97195 7.40375 7.49257 9.01274 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.002230 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.875695 B =12551.583099 C =12962.072313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.041 3.959 4 C 0.131 3.869 5 N -0.612 5.612 6 C 0.360 3.640 7 N -0.643 5.643 8 C 0.737 3.263 9 O -0.620 6.620 10 N -0.717 5.717 11 C 0.161 3.839 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.260 1.260 24 C 0.066 3.934 25 C 0.522 3.478 26 O -0.547 6.547 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.409 0.591 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.068 0.932 45 H -0.012 1.012 46 H -0.012 1.012 47 H 0.259 0.741 48 H 0.127 0.873 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 20.026 19.201 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C -0.036 4.036 4 C 0.011 3.989 5 N -0.347 5.347 6 C 0.151 3.849 7 N -0.385 5.385 8 C 0.438 3.562 9 O -0.500 6.500 10 N -0.373 5.373 11 C 0.036 3.964 12 C -0.064 4.064 13 C -0.179 4.179 14 C -0.179 4.179 15 C 0.002 3.998 16 C -0.549 4.549 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.579 5.579 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.184 1.184 24 C -0.060 4.060 25 C 0.310 3.690 26 O -0.425 6.425 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.007 0.993 46 H 0.006 0.994 47 H 0.068 0.932 48 H 0.145 0.855 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.452 19.504 19.568 29.200 hybrid contribution 0.059 -0.162 -1.216 1.228 sum -9.393 19.341 18.352 28.269 Atomic orbital electron populations 1.22847 0.79802 1.03442 1.00634 1.87864 1.21143 1.28336 1.95581 1.23099 0.93835 0.85036 1.01653 1.21747 0.92478 1.00569 0.84151 1.48420 1.65971 1.06868 1.13397 1.21059 1.00766 0.80557 0.82469 1.47001 1.72473 1.04713 1.14286 1.15088 0.78021 0.81219 0.81846 1.90948 1.61553 1.32061 1.65406 1.45012 1.71417 1.10789 1.10067 1.21156 0.99348 0.83527 0.92326 1.20711 0.96581 0.97405 0.91712 1.21697 0.96675 0.99083 1.00452 1.21702 0.96003 0.98302 1.01943 1.18975 0.94489 0.91629 0.94744 1.21590 1.43200 0.93104 0.97010 0.90940 1.25926 0.96374 0.95097 1.02841 1.70114 1.50743 0.99173 1.37889 0.85570 0.78546 0.77801 0.79855 1.20254 1.21725 1.18398 1.22076 1.06243 0.80629 0.97020 1.20582 0.76118 0.88060 0.84263 1.90779 1.55406 1.13928 1.82341 0.89247 0.92436 0.94232 0.89375 0.94102 0.86846 0.86742 0.90125 0.89627 0.75268 0.93194 0.93301 0.91322 0.92619 0.94324 0.94254 0.92591 0.91275 0.99336 0.99372 0.93240 0.85520 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.24 10.00 -148.98 -1.49 -7.73 16 3 C 0.04 0.46 6.28 71.98 0.45 0.91 16 4 C 0.13 1.38 6.37 86.38 0.55 1.93 16 5 N -0.61 -9.65 2.88 -834.38 -2.40 -12.05 16 6 C 0.36 6.62 7.48 170.95 1.28 7.90 16 7 N -0.64 -13.42 3.36 -854.30 -2.87 -16.29 16 8 C 0.74 20.88 8.53 179.06 1.53 22.40 16 9 O -0.62 -23.09 16.74 -4.01 -0.07 -23.16 16 10 N -0.72 -18.85 4.93 -478.52 -2.36 -21.20 16 11 C 0.16 5.47 4.56 86.38 0.39 5.87 16 12 C -0.06 -2.30 0.54 -52.18 -0.03 -2.32 16 13 C -0.12 -3.91 8.05 71.98 0.58 -3.34 16 14 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 15 C 0.04 1.94 4.04 29.85 0.12 2.06 16 16 C -0.51 -26.84 7.65 25.60 0.20 -26.64 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 18 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 19 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 24 C 0.07 1.03 6.36 85.56 0.54 1.58 16 25 C 0.52 9.74 8.13 87.75 0.71 10.46 16 26 O -0.55 -13.35 17.67 -3.03 -0.05 -13.40 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.11 1.03 7.98 -2.39 -0.02 1.01 16 34 H 0.08 1.67 7.58 -2.38 -0.02 1.65 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.41 8.33 5.25 -92.71 -0.49 7.84 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.64 6.86 -2.38 -0.02 1.62 16 40 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 44 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.26 14.84 8.31 -92.72 -0.77 14.07 16 48 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -73.80 396.11 2.14 -71.66 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.45 Total: 13.95 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 8.62 Total: 19.20 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -7.34 Total: -105.74 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.61 Total: -44.29 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.80 2.14 -71.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341571210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.433 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds