Wall clock time and date at job start Fri Apr 10 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47327 * 2 1 4 4 C 1.52995 * 109.47348 * 120.00164 * 2 1 3 5 5 C 1.53004 * 109.47076 * 174.15606 * 4 2 1 6 6 H 1.08999 * 109.48055 * 56.63783 * 5 4 2 7 7 C 1.53099 * 109.47816 * 176.67125 * 5 4 2 8 8 C 1.53182 * 109.15994 * 177.59511 * 7 5 4 9 9 H 1.09008 * 109.61292 * 183.10950 * 8 7 5 10 10 N 1.46492 * 109.54897 * 62.88330 * 8 7 5 11 11 C 1.34770 * 120.00168 * 155.43864 * 10 8 7 12 12 O 1.21585 * 120.00245 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00028 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99805 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47158 * 180.02562 * 14 13 11 16 16 O 1.21302 * 119.99625 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00492 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00154 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99905 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99876 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46911 * 89.99957 * 22 20 18 24 24 H 1.48498 * 109.47279 * 209.99881 * 22 20 18 25 25 H 1.48504 * 109.46974 * 330.00073 * 22 20 18 26 26 C 1.53176 * 109.03529 * 303.01510 * 8 7 5 27 27 C 1.53095 * 109.16246 * 56.98326 * 26 8 7 28 28 O 1.42899 * 109.48193 * 296.60841 * 5 4 2 29 29 H 1.08994 * 109.46947 * 296.54326 * 1 2 3 30 30 H 1.09000 * 109.47007 * 56.54688 * 1 2 3 31 31 H 1.09005 * 109.46442 * 176.54508 * 1 2 3 32 32 H 1.09006 * 109.47096 * 240.00405 * 2 1 3 33 33 H 1.08997 * 109.47668 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47330 * 300.00603 * 3 2 1 35 35 H 1.09006 * 109.46702 * 60.00163 * 3 2 1 36 36 H 1.09003 * 109.47286 * 54.16119 * 4 2 1 37 37 H 1.09001 * 109.47505 * 294.15824 * 4 2 1 38 38 H 1.08992 * 109.52357 * 57.68595 * 7 5 4 39 39 H 1.09004 * 109.51839 * 297.49581 * 7 5 4 40 40 H 0.97001 * 119.99780 * 335.72543 * 10 8 7 41 41 H 0.96997 * 119.99764 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47167 * 299.99661 * 14 13 11 43 43 H 1.08992 * 109.47629 * 60.00143 * 14 13 11 44 44 H 0.97000 * 120.00037 * 0.02562 * 17 15 14 45 45 H 0.97001 * 120.00014 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.52357 * 176.89139 * 26 8 7 47 47 H 1.09009 * 109.52296 * 297.01689 * 26 8 7 48 48 H 1.09000 * 109.48115 * 62.37649 * 27 26 8 49 49 H 1.09003 * 109.47902 * 182.40515 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5630 -0.8497 1.1778 6 1 4.0062 0.1396 1.0639 7 6 4.0816 -1.4966 2.4648 8 6 5.5993 -1.6766 2.3609 9 1 5.9690 -2.1869 3.2504 10 7 6.2416 -0.3651 2.2456 11 6 7.5239 -0.2068 2.6290 12 8 8.1478 -1.1526 3.0700 13 7 8.1148 1.0000 2.5234 14 6 9.5089 1.1719 2.9396 15 6 9.9254 2.6037 2.7213 16 8 9.1354 3.4019 2.2627 17 7 11.1754 2.9974 3.0356 18 6 11.5544 4.2998 2.8366 19 1 10.8511 5.0104 2.4283 20 6 12.8430 4.7057 3.1612 21 7 13.6986 3.8411 3.6585 22 14 13.3597 6.4802 2.8893 23 1 13.0691 7.2730 4.1108 24 1 14.8152 6.5331 2.5994 25 1 12.6055 7.0450 1.7415 26 6 5.9191 -2.5147 1.1192 27 6 5.3294 -1.8285 -0.1158 28 8 3.9207 -1.6640 0.0594 29 1 -0.3633 0.4592 0.9193 30 1 -0.3633 0.5665 -0.8574 31 1 -0.3632 -1.0259 -0.0619 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.5939 -1.7143 1.3030 37 1 1.7647 -0.1507 2.1361 38 1 3.6079 -2.4688 2.6003 39 1 3.8482 -0.8550 3.3146 40 1 5.7428 0.3903 1.8973 41 1 7.6170 1.7546 2.1718 42 1 9.6059 0.9228 3.9963 43 1 10.1477 0.5137 2.3509 44 1 11.8072 2.3590 3.4020 45 1 14.5981 4.1245 3.8854 46 1 6.9998 -2.6013 1.0067 47 1 5.4833 -3.5080 1.2281 48 1 5.7960 -0.8521 -0.2466 49 1 5.5170 -2.4421 -0.9969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345564241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:17 Heat of formation + Delta-G solvation = -160.331426 kcal Electronic energy + Delta-G solvation = -28318.328376 eV Core-core repulsion = 24278.525333 eV Total energy + Delta-G solvation = -4039.803043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64143 -40.53660 -39.79433 -37.20277 -36.29881 -35.99264 -35.26827 -33.38948 -32.65521 -32.36281 -29.12919 -28.06370 -27.90549 -26.37664 -25.16988 -23.46989 -22.49222 -21.38300 -20.79739 -20.59755 -20.07734 -19.61406 -17.53937 -17.44468 -17.22254 -17.11001 -16.79973 -16.48867 -16.12753 -15.96674 -15.80638 -15.57786 -15.19034 -15.14303 -14.90257 -14.38747 -13.98256 -13.96090 -13.67152 -13.55402 -13.52475 -13.27993 -13.08661 -12.92523 -12.90856 -12.69233 -12.45778 -12.31065 -12.18863 -12.12968 -11.74480 -11.57014 -11.54955 -11.43435 -11.41387 -11.01836 -10.55791 -10.49555 -10.31525 -10.10185 -9.83079 -8.51054 -6.01239 1.36366 1.42360 1.53408 1.60321 1.89640 2.10685 2.28448 2.84074 3.03316 3.16157 3.29999 3.58551 3.74975 3.86971 4.00551 4.08276 4.14159 4.21102 4.22479 4.28925 4.37010 4.42807 4.45934 4.63220 4.66307 4.78141 4.82778 4.84535 4.87680 4.91395 5.00540 5.03646 5.09760 5.11419 5.15405 5.22002 5.30489 5.38653 5.39777 5.49426 5.53327 5.59557 5.89527 5.93418 6.31314 6.47923 6.99327 7.03417 7.42504 7.52275 7.94346 8.65778 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002214 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.348903 B =12645.928067 C =13758.845340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.102 4.102 5 C 0.085 3.915 6 H 0.058 0.942 7 C -0.148 4.148 8 C 0.160 3.840 9 H 0.079 0.921 10 N -0.728 5.728 11 C 0.706 3.294 12 O -0.628 6.628 13 N -0.725 5.725 14 C 0.143 3.857 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.162 4.162 27 C 0.066 3.934 28 O -0.384 6.384 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.404 0.596 41 H 0.409 0.591 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.043 0.957 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.059 -11.358 -4.780 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.139 4.139 5 C 0.027 3.973 6 H 0.076 0.924 7 C -0.186 4.186 8 C 0.055 3.945 9 H 0.097 0.903 10 N -0.385 5.385 11 C 0.406 3.594 12 O -0.510 6.510 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.201 4.201 27 C -0.011 4.011 28 O -0.303 6.303 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.240 0.760 41 H 0.246 0.754 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.061 0.939 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.934 -11.750 -4.735 26.200 hybrid contribution 0.940 1.216 -0.019 1.537 sum -21.994 -10.533 -4.754 24.846 Atomic orbital electron populations 1.21820 0.94592 1.01835 1.01991 1.21041 0.96022 0.95912 0.98379 1.21918 1.00763 0.96152 1.01993 1.21676 0.91738 1.01738 0.98793 1.22267 0.96582 0.93111 0.85297 0.92439 1.22485 0.92609 1.04280 0.99240 1.20911 0.92778 0.82223 0.98560 0.90319 1.45135 1.10569 1.13454 1.69301 1.15939 0.82356 0.82502 0.78602 1.90882 1.65113 1.40770 1.54198 1.44709 1.13204 1.11049 1.69275 1.20570 0.83040 0.93140 1.01866 1.20420 0.83098 0.90414 0.84016 1.90469 1.52896 1.55923 1.51914 1.41836 1.11043 1.11047 1.55552 1.19727 0.97689 0.86999 1.42142 0.89564 1.26141 0.95137 1.04182 0.95782 1.69681 1.06726 1.36633 1.42531 0.84864 0.77563 0.76686 0.78848 1.19542 1.19694 1.19448 1.22529 1.01427 1.00417 0.95729 1.22502 0.81113 0.99730 0.97751 1.87926 1.22640 1.71217 1.48512 0.92204 0.92779 0.92537 0.91845 0.93246 0.92863 0.92139 0.90774 0.89240 0.88191 0.89016 0.75969 0.75352 0.89078 0.89127 0.76701 0.91081 0.92126 0.88990 0.93909 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 71.98 0.66 -0.91 16 2 C -0.10 -1.23 2.86 -10.80 -0.03 -1.26 16 3 C -0.15 -2.01 8.97 71.98 0.65 -1.37 16 4 C -0.10 -1.19 4.39 30.59 0.13 -1.05 16 5 C 0.08 1.20 2.33 30.63 0.07 1.27 16 6 H 0.06 0.84 5.02 -2.39 -0.01 0.83 16 7 C -0.15 -1.99 5.07 30.69 0.16 -1.83 16 8 C 0.16 3.09 2.81 45.11 0.13 3.22 16 9 H 0.08 1.80 7.59 -2.38 -0.02 1.78 16 10 N -0.73 -16.17 4.41 -457.25 -2.01 -18.19 16 11 C 0.71 21.83 8.53 179.05 1.53 23.36 16 12 O -0.63 -23.65 16.01 -3.98 -0.06 -23.72 16 13 N -0.72 -23.58 5.53 -482.30 -2.67 -26.25 16 14 C 0.14 5.21 6.15 85.63 0.53 5.74 16 15 C 0.43 19.88 7.85 87.66 0.69 20.57 16 16 O -0.62 -31.91 15.24 -3.10 -0.05 -31.95 16 17 N -0.56 -27.99 5.29 -306.98 -1.62 -29.61 16 18 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 19 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 22 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.16 -3.05 5.80 30.68 0.18 -2.87 16 27 C 0.07 1.16 6.68 72.01 0.48 1.64 16 28 O -0.38 -6.80 9.78 -148.98 -1.46 -8.26 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 1.02 7.62 -2.38 -0.02 1.00 16 33 H 0.05 0.72 6.52 -2.39 -0.02 0.70 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.40 7.43 7.09 -92.71 -0.66 6.77 16 41 H 0.41 12.97 7.45 -92.71 -0.69 12.28 16 42 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.04 0.82 7.75 -2.39 -0.02 0.80 16 49 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.13 392.39 -0.22 -66.35 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -1.10 Total: 47.54 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.45 Total: 28.72 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -6.02 Total: -122.32 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -1.57 Total: -63.93 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.13 -0.22 -66.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.985 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds