Wall clock time and date at job start Fri Apr 10 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.52998 * 109.47232 * 119.99726 * 2 1 3 5 5 C 1.53000 * 109.46860 * 174.15976 * 4 2 1 6 6 H 1.09000 * 109.49311 * 56.58470 * 5 4 2 7 7 C 1.53095 * 109.47813 * 176.61476 * 5 4 2 8 8 C 1.53184 * 109.16292 * 177.58908 * 7 5 4 9 9 H 1.09007 * 109.53897 * 62.97210 * 8 7 5 10 10 N 1.46496 * 109.54399 * 183.15075 * 8 7 5 11 11 C 1.34774 * 120.00117 * 204.99951 * 10 8 7 12 12 O 1.21592 * 119.99992 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00204 * 179.97438 * 11 10 8 14 14 C 1.46501 * 120.00096 * 179.72269 * 13 11 10 15 15 C 1.50701 * 109.47131 * 180.27740 * 14 13 11 16 16 O 1.21290 * 119.99917 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99761 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00296 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99800 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99877 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99881 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46749 * 90.00387 * 22 20 18 24 24 H 1.48505 * 109.46845 * 209.99858 * 22 20 18 25 25 H 1.48495 * 109.47266 * 330.00254 * 22 20 18 26 26 C 1.53178 * 109.03628 * 303.02246 * 8 7 5 27 27 C 1.53085 * 109.16598 * 56.97634 * 26 8 7 28 28 O 1.42902 * 109.41861 * 302.39346 * 27 26 8 29 29 H 1.08995 * 109.47270 * 56.54836 * 1 2 3 30 30 H 1.09003 * 109.46680 * 176.55406 * 1 2 3 31 31 H 1.08997 * 109.46968 * 296.54776 * 1 2 3 32 32 H 1.08995 * 109.47077 * 240.00444 * 2 1 3 33 33 H 1.08997 * 109.47387 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.47088 * 300.00311 * 3 2 1 35 35 H 1.09002 * 109.47034 * 59.99669 * 3 2 1 36 36 H 1.08994 * 109.46804 * 54.16166 * 4 2 1 37 37 H 1.09002 * 109.47046 * 294.15419 * 4 2 1 38 38 H 1.08999 * 109.52451 * 57.68472 * 7 5 4 39 39 H 1.08997 * 109.52289 * 297.49259 * 7 5 4 40 40 H 0.96996 * 119.99965 * 25.00351 * 10 8 7 41 41 H 0.96996 * 119.99879 * 0.02562 * 13 11 10 42 42 H 1.08996 * 109.47234 * 300.28450 * 14 13 11 43 43 H 1.09004 * 109.46701 * 60.28207 * 14 13 11 44 44 H 0.97004 * 120.00201 * 0.02562 * 17 15 14 45 45 H 0.96995 * 119.99671 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.52215 * 176.88842 * 26 8 7 47 47 H 1.09004 * 109.51976 * 297.07480 * 26 8 7 48 48 H 1.08997 * 109.48211 * 182.40998 * 27 26 8 49 49 H 1.09007 * 109.48030 * 62.37380 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5630 -0.8495 1.1779 6 1 4.0063 0.1396 1.0630 7 6 4.0817 -1.4950 2.4656 8 6 5.5994 -1.6751 2.3617 9 1 6.0773 -0.6992 2.2764 10 7 6.0946 -2.3606 3.5580 11 6 7.3744 -2.1967 3.9473 12 8 8.1179 -1.4796 3.3060 13 7 7.8298 -2.8269 5.0482 14 6 9.2227 -2.6536 5.4680 15 6 9.4766 -3.4637 6.7131 16 8 8.5822 -4.1216 7.2015 17 7 10.6974 -3.4572 7.2839 18 6 10.9286 -4.1947 8.4164 19 1 10.1322 -4.7805 8.8512 20 6 12.1871 -4.1876 9.0052 21 7 12.4085 -4.8941 10.0910 22 14 13.5643 -3.1738 8.2534 23 1 13.5541 -1.8108 8.8429 24 1 14.8689 -3.8252 8.5350 25 1 13.3648 -3.0796 6.7849 26 6 5.9191 -2.5144 1.1208 27 6 5.3294 -1.8296 -0.1148 28 8 3.9207 -1.6649 0.0602 29 1 -0.3633 0.5664 -0.8574 30 1 -0.3633 -1.0259 -0.0618 31 1 -0.3633 0.4593 0.9193 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.5938 -1.7142 1.3031 37 1 1.7647 -0.1504 2.1361 38 1 3.6081 -2.4672 2.6021 39 1 3.8484 -0.8527 3.3147 40 1 5.5014 -2.9324 4.0698 41 1 7.2366 -3.3987 5.5601 42 1 9.8867 -2.9919 4.6726 43 1 9.4112 -1.6002 5.6752 44 1 11.4126 -2.9308 6.8936 45 1 13.2872 -4.8894 10.5018 46 1 6.9998 -2.6011 1.0083 47 1 5.4825 -3.5072 1.2302 48 1 5.5169 -2.4441 -0.9953 49 1 5.7958 -0.8532 -0.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345564245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:23 Heat of formation + Delta-G solvation = -133.902574 kcal Electronic energy + Delta-G solvation = -27732.638604 eV Core-core repulsion = 23693.981602 eV Total energy + Delta-G solvation = -4038.657002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.48573 -39.48845 -38.37861 -36.61122 -35.36342 -34.47018 -33.74686 -32.03885 -31.83454 -31.51226 -27.96711 -27.54358 -27.12999 -24.61910 -23.92039 -22.80296 -20.75318 -20.69365 -20.21555 -19.65888 -18.84779 -18.07155 -16.81321 -16.63295 -15.94129 -15.63979 -15.55442 -15.38724 -15.10128 -14.84199 -14.60005 -14.54154 -14.07611 -14.00102 -13.83850 -13.40731 -13.31153 -13.12097 -12.63624 -12.50827 -12.49711 -12.24927 -12.17811 -12.16244 -11.77213 -11.72307 -11.40802 -11.25239 -11.14348 -11.00907 -10.93821 -10.65173 -10.48926 -10.21377 -10.07252 -9.78718 -9.70898 -9.24575 -8.78117 -8.72473 -8.31490 -6.41859 -3.94495 2.68373 2.98883 3.03610 3.11808 3.28423 3.44959 3.56400 4.02537 4.15494 4.25890 4.45499 4.51216 4.58425 4.59499 4.68551 4.77373 4.82462 4.91299 5.04405 5.13203 5.18199 5.20490 5.26845 5.35415 5.38492 5.40546 5.47992 5.53026 5.61064 5.62536 5.66513 5.71160 5.77561 5.81054 5.83827 5.85037 5.95226 5.99930 6.08452 6.44474 6.61638 6.93470 7.00971 7.43917 7.99112 8.14399 8.43268 8.69926 8.80611 9.28757 9.62407 10.70295 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.001814 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.516892 B =15434.848919 C =15701.944673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.094 3.906 6 H 0.064 0.936 7 C -0.159 4.159 8 C 0.166 3.834 9 H 0.088 0.912 10 N -0.744 5.744 11 C 0.706 3.294 12 O -0.599 6.599 13 N -0.725 5.725 14 C 0.126 3.874 15 C 0.438 3.562 16 O -0.580 6.580 17 N -0.576 5.576 18 C -0.311 4.311 19 H 0.121 0.879 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C -0.168 4.168 27 C 0.066 3.934 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.397 0.603 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.374 0.626 45 H 0.276 0.724 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.155 10.388 -21.012 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.143 4.143 5 C 0.036 3.964 6 H 0.082 0.918 7 C -0.197 4.197 8 C 0.060 3.940 9 H 0.107 0.893 10 N -0.399 5.399 11 C 0.406 3.594 12 O -0.478 6.478 13 N -0.382 5.382 14 C -0.002 4.002 15 C 0.224 3.776 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.207 4.207 27 C -0.012 4.012 28 O -0.296 6.296 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.231 0.769 41 H 0.245 0.755 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.014 10.443 -21.165 30.308 hybrid contribution 1.050 0.193 0.335 1.119 sum -17.963 10.636 -20.831 29.491 Atomic orbital electron populations 1.21844 0.95338 1.01679 1.01627 1.21074 0.95412 0.96120 0.98854 1.21914 1.01158 0.96052 1.01625 1.21677 0.92679 1.01525 0.98469 1.22113 0.95755 0.93525 0.85036 0.91850 1.22551 0.94919 1.02961 0.99290 1.20744 0.93156 0.96458 0.83637 0.89348 1.45115 1.11000 1.53396 1.30357 1.15857 0.82079 0.80576 0.80922 1.90896 1.56319 1.43354 1.57194 1.44765 1.13118 1.51992 1.28349 1.20799 0.82484 1.00612 0.96335 1.19658 0.84000 0.86907 0.87024 1.90534 1.43742 1.46569 1.65547 1.42114 1.09892 1.43399 1.25970 1.19442 0.99026 1.24549 1.00891 0.86097 1.25066 0.97551 0.97252 0.96010 1.69619 1.23582 1.39236 1.18877 0.86670 0.82440 0.80896 0.79487 1.19389 1.19973 1.19209 1.22656 1.02648 1.00325 0.95112 1.22534 0.81127 0.99943 0.97554 1.87926 1.22801 1.70923 1.47918 0.92779 0.92708 0.92831 0.90262 0.92571 0.92813 0.92802 0.90958 0.90515 0.90347 0.90133 0.76898 0.75463 0.89925 0.89903 0.79228 0.91383 0.90056 0.90852 0.88604 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 2 C -0.10 -0.61 2.86 -90.62 -0.26 -0.87 16 3 C -0.15 -0.89 8.97 37.16 0.33 -0.56 16 4 C -0.11 -0.67 4.39 -26.73 -0.12 -0.79 16 5 C 0.09 0.70 2.50 -26.68 -0.07 0.63 16 6 H 0.06 0.47 6.44 -51.93 -0.33 0.14 16 7 C -0.16 -1.21 4.89 -26.59 -0.13 -1.34 16 8 C 0.17 1.65 2.54 -67.75 -0.17 1.48 16 9 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 10 N -0.74 -8.38 5.09 -58.49 -0.30 -8.68 16 11 C 0.71 10.78 8.54 -86.92 -0.74 10.04 16 12 O -0.60 -10.97 16.00 5.28 0.08 -10.88 16 13 N -0.72 -11.52 5.53 -66.41 -0.37 -11.89 16 14 C 0.13 2.20 6.15 -5.19 -0.03 2.16 16 15 C 0.44 9.60 7.85 -10.99 -0.09 9.51 16 16 O -0.58 -14.55 15.24 5.55 0.08 -14.47 16 17 N -0.58 -13.36 5.09 -10.96 -0.06 -13.41 16 18 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 20 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.90 13.96 55.50 0.77 -24.12 16 22 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 26 C -0.17 -1.61 5.72 -26.60 -0.15 -1.77 16 27 C 0.07 0.54 6.84 37.20 0.25 0.80 16 28 O -0.38 -3.36 9.78 -35.23 -0.34 -3.70 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.60 7.62 -51.93 -0.40 0.20 16 33 H 0.06 0.35 6.52 -51.93 -0.34 0.01 16 34 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 3.63 8.62 -40.82 -0.35 3.28 16 41 H 0.41 6.34 7.45 -40.82 -0.30 6.04 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 45 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.61 393.11 -8.24 -40.85 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -8.25 Total: 14.88 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -1.08 Total: 11.26 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.05 Total: -58.11 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.18 Total: -29.06 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.61 -8.24 -40.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.049 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds