Wall clock time and date at job start Fri Apr 10 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.52998 * 109.47232 * 119.99726 * 2 1 3 5 5 C 1.53000 * 109.46860 * 174.15976 * 4 2 1 6 6 H 1.09000 * 109.49311 * 56.58470 * 5 4 2 7 7 C 1.53095 * 109.47813 * 176.61476 * 5 4 2 8 8 C 1.53184 * 109.16292 * 177.58908 * 7 5 4 9 9 H 1.09007 * 109.53897 * 62.97210 * 8 7 5 10 10 N 1.46496 * 109.54399 * 183.15075 * 8 7 5 11 11 C 1.34774 * 120.00117 * 204.99951 * 10 8 7 12 12 O 1.21592 * 119.99992 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00204 * 179.97438 * 11 10 8 14 14 C 1.46501 * 120.00096 * 179.72269 * 13 11 10 15 15 C 1.50701 * 109.47131 * 180.27740 * 14 13 11 16 16 O 1.21290 * 119.99917 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99761 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00296 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99800 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99877 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99881 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46749 * 90.00387 * 22 20 18 24 24 H 1.48505 * 109.46845 * 209.99858 * 22 20 18 25 25 H 1.48495 * 109.47266 * 330.00254 * 22 20 18 26 26 C 1.53178 * 109.03628 * 303.02246 * 8 7 5 27 27 C 1.53085 * 109.16598 * 56.97634 * 26 8 7 28 28 O 1.42902 * 109.41861 * 302.39346 * 27 26 8 29 29 H 1.08995 * 109.47270 * 56.54836 * 1 2 3 30 30 H 1.09003 * 109.46680 * 176.55406 * 1 2 3 31 31 H 1.08997 * 109.46968 * 296.54776 * 1 2 3 32 32 H 1.08995 * 109.47077 * 240.00444 * 2 1 3 33 33 H 1.08997 * 109.47387 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.47088 * 300.00311 * 3 2 1 35 35 H 1.09002 * 109.47034 * 59.99669 * 3 2 1 36 36 H 1.08994 * 109.46804 * 54.16166 * 4 2 1 37 37 H 1.09002 * 109.47046 * 294.15419 * 4 2 1 38 38 H 1.08999 * 109.52451 * 57.68472 * 7 5 4 39 39 H 1.08997 * 109.52289 * 297.49259 * 7 5 4 40 40 H 0.96996 * 119.99965 * 25.00351 * 10 8 7 41 41 H 0.96996 * 119.99879 * 0.02562 * 13 11 10 42 42 H 1.08996 * 109.47234 * 300.28450 * 14 13 11 43 43 H 1.09004 * 109.46701 * 60.28207 * 14 13 11 44 44 H 0.97004 * 120.00201 * 0.02562 * 17 15 14 45 45 H 0.96995 * 119.99671 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.52215 * 176.88842 * 26 8 7 47 47 H 1.09004 * 109.51976 * 297.07480 * 26 8 7 48 48 H 1.08997 * 109.48211 * 182.40998 * 27 26 8 49 49 H 1.09007 * 109.48030 * 62.37380 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5630 -0.8495 1.1779 6 1 4.0063 0.1396 1.0630 7 6 4.0817 -1.4950 2.4656 8 6 5.5994 -1.6751 2.3617 9 1 6.0773 -0.6992 2.2764 10 7 6.0946 -2.3606 3.5580 11 6 7.3744 -2.1967 3.9473 12 8 8.1179 -1.4796 3.3060 13 7 7.8298 -2.8269 5.0482 14 6 9.2227 -2.6536 5.4680 15 6 9.4766 -3.4637 6.7131 16 8 8.5822 -4.1216 7.2015 17 7 10.6974 -3.4572 7.2839 18 6 10.9286 -4.1947 8.4164 19 1 10.1322 -4.7805 8.8512 20 6 12.1871 -4.1876 9.0052 21 7 12.4085 -4.8941 10.0910 22 14 13.5643 -3.1738 8.2534 23 1 13.5541 -1.8108 8.8429 24 1 14.8689 -3.8252 8.5350 25 1 13.3648 -3.0796 6.7849 26 6 5.9191 -2.5144 1.1208 27 6 5.3294 -1.8296 -0.1148 28 8 3.9207 -1.6649 0.0602 29 1 -0.3633 0.5664 -0.8574 30 1 -0.3633 -1.0259 -0.0618 31 1 -0.3633 0.4593 0.9193 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.5938 -1.7142 1.3031 37 1 1.7647 -0.1504 2.1361 38 1 3.6081 -2.4672 2.6021 39 1 3.8484 -0.8527 3.3147 40 1 5.5014 -2.9324 4.0698 41 1 7.2366 -3.3987 5.5601 42 1 9.8867 -2.9919 4.6726 43 1 9.4112 -1.6002 5.6752 44 1 11.4126 -2.9308 6.8936 45 1 13.2872 -4.8894 10.5018 46 1 6.9998 -2.6011 1.0083 47 1 5.4825 -3.5072 1.2302 48 1 5.5169 -2.4441 -0.9953 49 1 5.7958 -0.8532 -0.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345564245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:23 Heat of formation + Delta-G solvation = -158.364155 kcal Electronic energy + Delta-G solvation = -27733.699338 eV Core-core repulsion = 23693.981602 eV Total energy + Delta-G solvation = -4039.717736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.49314 -40.59698 -39.94781 -37.20661 -36.38013 -36.11562 -35.29290 -33.84106 -32.70493 -32.40256 -29.33914 -28.02476 -27.87680 -26.25602 -24.85103 -23.53105 -21.83982 -21.52443 -21.42830 -20.74406 -20.57838 -19.47931 -17.75347 -17.44233 -17.31281 -16.89568 -16.80323 -16.63754 -16.04175 -15.94921 -15.76217 -15.42146 -15.22488 -15.07728 -14.89828 -14.57937 -14.31743 -14.03969 -14.01457 -13.98237 -13.63459 -13.09006 -13.00988 -12.96720 -12.81119 -12.45056 -12.43875 -12.29596 -12.09529 -12.00456 -11.82372 -11.58290 -11.54280 -11.49736 -11.42743 -11.04551 -10.65838 -10.50198 -10.41260 -10.31921 -9.84761 -8.45824 -6.07865 1.31143 1.34020 1.43602 1.55720 1.78557 2.09723 2.20341 2.76891 2.84570 3.10539 3.25436 3.57798 3.79130 3.85487 3.98923 4.08935 4.09445 4.11210 4.21102 4.28696 4.39208 4.41132 4.44179 4.54347 4.62910 4.73165 4.81133 4.82883 4.86904 4.91221 5.01239 5.05564 5.10612 5.12852 5.15688 5.23582 5.28940 5.39577 5.47704 5.49926 5.52421 5.59766 5.87871 5.93922 6.30887 6.48573 6.77846 7.00364 7.28278 7.51154 7.77906 8.70562 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.001814 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.516892 B =15434.848919 C =15701.944673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.103 4.103 5 C 0.093 3.907 6 H 0.064 0.936 7 C -0.150 4.150 8 C 0.163 3.837 9 H 0.073 0.927 10 N -0.729 5.729 11 C 0.706 3.294 12 O -0.628 6.628 13 N -0.727 5.727 14 C 0.139 3.861 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.063 0.937 20 C -0.007 4.007 21 N -0.925 5.925 22 Si 0.959 3.041 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.233 1.233 26 C -0.163 4.163 27 C 0.068 3.932 28 O -0.386 6.386 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.409 0.591 41 H 0.410 0.590 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.392 0.608 45 H 0.281 0.719 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 12.137 -22.919 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.140 4.140 5 C 0.035 3.965 6 H 0.082 0.918 7 C -0.188 4.188 8 C 0.058 3.942 9 H 0.091 0.909 10 N -0.384 5.384 11 C 0.406 3.594 12 O -0.510 6.510 13 N -0.385 5.385 14 C 0.010 3.990 15 C 0.233 3.767 16 O -0.500 6.500 17 N -0.217 5.217 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.202 4.202 27 C -0.009 4.009 28 O -0.305 6.305 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.245 0.755 41 H 0.247 0.753 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.180 12.190 -23.098 32.403 hybrid contribution 0.933 -0.403 0.930 1.378 sum -18.247 11.787 -22.167 31.037 Atomic orbital electron populations 1.21826 0.94687 1.01769 1.02034 1.21042 0.95941 0.96139 0.98234 1.21904 1.00819 0.95896 1.02027 1.21675 0.91698 1.01660 0.98985 1.22210 0.96540 0.93319 0.84479 0.91775 1.22498 0.92852 1.03623 0.99820 1.20866 0.94599 0.95562 0.83150 0.90917 1.45060 1.09783 1.52976 1.30550 1.15930 0.82938 0.80135 0.80383 1.90877 1.57438 1.44658 1.57985 1.44729 1.12627 1.52356 1.28767 1.20682 0.83770 1.00510 0.94013 1.20510 0.82937 0.85746 0.87510 1.90522 1.44849 1.47848 1.66822 1.41915 1.11025 1.43631 1.25172 1.19035 0.98363 1.25727 1.02991 0.91849 1.26061 1.00320 0.98252 0.96094 1.69780 1.24786 1.41185 1.20767 0.85450 0.77470 0.78829 0.80403 1.18078 1.19835 1.15601 1.22581 1.01487 1.00500 0.95618 1.22551 0.80913 1.00168 0.97287 1.87926 1.22928 1.71193 1.48503 0.92560 0.92772 0.92269 0.91669 0.93073 0.92622 0.92219 0.91127 0.89285 0.89668 0.89116 0.75469 0.75286 0.88185 0.88014 0.77219 0.90925 0.91917 0.90700 0.87428 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.10 -1.07 2.86 -10.79 -0.03 -1.10 16 3 C -0.15 -1.56 8.97 71.98 0.65 -0.92 16 4 C -0.10 -1.11 4.39 30.59 0.13 -0.98 16 5 C 0.09 1.23 2.50 30.63 0.08 1.30 16 6 H 0.06 0.86 6.44 -2.39 -0.02 0.84 16 7 C -0.15 -1.98 4.89 30.69 0.15 -1.83 16 8 C 0.16 3.03 2.54 45.11 0.11 3.15 16 9 H 0.07 1.62 7.58 -2.38 -0.02 1.61 16 10 N -0.73 -15.31 5.09 -457.23 -2.33 -17.63 16 11 C 0.71 20.50 8.54 179.05 1.53 22.03 16 12 O -0.63 -22.09 16.00 -4.01 -0.06 -22.16 16 13 N -0.73 -22.03 5.53 -482.29 -2.67 -24.70 16 14 C 0.14 4.54 6.15 85.63 0.53 5.06 16 15 C 0.45 19.28 7.85 87.66 0.69 19.97 16 16 O -0.61 -31.39 15.24 -3.06 -0.05 -31.43 16 17 N -0.58 -26.41 5.09 -306.98 -1.56 -27.97 16 18 C -0.33 -18.79 10.16 84.04 0.85 -17.94 16 19 H 0.06 4.24 7.39 -2.91 -0.02 4.21 16 20 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 21 N -0.93 -54.20 13.96 21.66 0.30 -53.89 16 22 Si 0.96 37.94 27.74 68.60 1.90 39.84 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 25 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 26 C -0.16 -2.95 5.72 30.68 0.18 -2.77 16 27 C 0.07 1.04 6.84 72.01 0.49 1.53 16 28 O -0.39 -6.33 9.78 -148.98 -1.46 -7.79 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.92 7.62 -2.39 -0.02 0.90 16 33 H 0.05 0.58 6.52 -2.39 -0.02 0.57 16 34 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.41 6.74 8.62 -92.71 -0.80 5.94 16 41 H 0.41 12.33 7.45 -92.71 -0.69 11.63 16 42 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.39 15.05 5.76 -92.70 -0.53 14.51 16 45 H 0.28 15.05 8.31 -92.71 -0.77 14.27 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -73.14 393.11 -0.55 -73.69 By element: Atomic # 1 Polarization: 46.29 SS G_CDS: -1.11 Total: 45.18 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.49 Total: 26.87 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -6.25 Total: -124.19 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -1.57 Total: -61.38 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -73.14 -0.55 -73.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.679 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds