Wall clock time and date at job start Fri Apr 10 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 C 1.52996 * 109.47250 * 120.00284 * 2 1 3 5 5 C 1.53012 * 109.47121 * 64.99819 * 4 2 1 6 6 H 1.09000 * 109.47549 * 305.02412 * 5 4 2 7 7 C 1.53092 * 109.47948 * 185.00267 * 5 4 2 8 8 C 1.53174 * 109.16359 * 182.39936 * 7 5 4 9 9 H 1.09002 * 109.54156 * 297.02319 * 8 7 5 10 10 N 1.46493 * 109.54690 * 176.84865 * 8 7 5 11 11 C 1.34773 * 120.00480 * 154.99680 * 10 8 7 12 12 O 1.21593 * 119.99596 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00282 * 179.97438 * 11 10 8 14 14 C 1.46506 * 120.00027 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46888 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99999 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00123 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00419 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00536 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00506 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00065 * 22 20 18 26 26 C 1.53176 * 109.03677 * 56.97644 * 8 7 5 27 27 C 1.53096 * 109.16427 * 303.02096 * 26 8 7 28 28 O 1.42900 * 109.48902 * 65.05224 * 5 4 2 29 29 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47005 * 300.00185 * 1 2 3 31 31 H 1.09004 * 109.47019 * 60.00034 * 1 2 3 32 32 H 1.09009 * 109.47107 * 240.00244 * 2 1 3 33 33 H 1.09000 * 109.46864 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47457 * 299.99798 * 3 2 1 35 35 H 1.09000 * 109.46946 * 60.00364 * 3 2 1 36 36 H 1.09000 * 109.47180 * 304.99945 * 4 2 1 37 37 H 1.08997 * 109.47311 * 184.99867 * 4 2 1 38 38 H 1.08998 * 109.52208 * 62.48889 * 7 5 4 39 39 H 1.08997 * 109.52100 * 302.30365 * 7 5 4 40 40 H 0.97005 * 119.99968 * 334.99431 * 10 8 7 41 41 H 0.96996 * 120.00282 * 359.97438 * 13 11 10 42 42 H 1.08997 * 109.46855 * 59.99822 * 14 13 11 43 43 H 1.09007 * 109.46712 * 300.00101 * 14 13 11 44 44 H 0.97000 * 119.99732 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00340 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.52302 * 62.92692 * 26 8 7 47 47 H 1.08998 * 109.51902 * 183.11723 * 26 8 7 48 48 H 1.08992 * 109.47962 * 297.62608 * 27 26 8 49 49 H 1.08994 * 109.47924 * 177.59066 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1878 6 1 0.5563 -2.2709 1.0522 7 6 2.0354 -2.8896 2.4924 8 6 1.6815 -4.3770 2.3998 9 1 0.6024 -4.4891 2.2943 10 7 2.1291 -5.0639 3.6138 11 6 1.5248 -6.2031 4.0053 12 8 0.6083 -6.6611 3.3506 13 7 1.9370 -6.8353 5.1220 14 6 1.2805 -8.0740 5.5472 15 6 1.9252 -8.5750 6.8139 16 8 2.8425 -7.9578 7.3126 17 7 1.4818 -9.7083 7.3930 18 6 2.0686 -10.1644 8.5450 19 1 2.8860 -9.6153 8.9887 20 6 1.6119 -11.3331 9.1419 21 7 0.6177 -12.0016 8.6018 22 14 2.4119 -11.9549 10.7112 23 1 1.7467 -13.2107 11.1419 24 1 3.8518 -12.2185 10.4619 25 1 2.2735 -10.9301 11.7769 26 6 2.3830 -4.9826 1.1802 27 6 1.9692 -4.2077 -0.0737 28 8 2.2987 -2.8270 0.0909 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.4966 -2.4381 3.3254 39 1 3.1085 -2.7796 2.6491 40 1 2.8606 -4.6987 4.1360 41 1 2.6689 -6.4706 5.6437 42 1 1.3832 -8.8265 4.7654 43 1 0.2231 -7.8809 5.7290 44 1 0.7479 -10.2017 6.9943 45 1 0.2990 -12.8176 9.0182 46 1 3.4631 -4.9149 1.3103 47 1 2.0926 -6.0278 1.0747 48 1 0.8948 -4.3094 -0.2258 49 1 2.4984 -4.6070 -0.9389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345564246.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:27 Heat of formation + Delta-G solvation = -140.902466 kcal Electronic energy + Delta-G solvation = -27673.683392 eV Core-core repulsion = 23634.722852 eV Total energy + Delta-G solvation = -4038.960540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43067 -39.40976 -38.19106 -36.58757 -35.30743 -34.38873 -33.65708 -31.99572 -31.56448 -31.29299 -27.82518 -27.52300 -27.03287 -24.67415 -23.95904 -22.78976 -20.71026 -20.64983 -20.18783 -19.58723 -18.40409 -17.94662 -16.76796 -16.60171 -15.85485 -15.61511 -15.46380 -15.37467 -14.93460 -14.72124 -14.54601 -14.44625 -14.05352 -13.89979 -13.81333 -13.55100 -13.28694 -13.22275 -12.60963 -12.48661 -12.22136 -12.18367 -12.01756 -11.72867 -11.69708 -11.63222 -11.37393 -11.13361 -11.08559 -10.98688 -10.92313 -10.51231 -10.45222 -10.32141 -10.13687 -9.74237 -9.63029 -9.17554 -8.63235 -8.62853 -8.10341 -6.51563 -3.93767 2.76155 3.13375 3.21289 3.25187 3.36806 3.48100 3.74780 4.07709 4.21899 4.36161 4.50057 4.55246 4.60393 4.71022 4.80424 4.85634 4.89529 4.95080 5.07649 5.16980 5.21580 5.23652 5.28675 5.37933 5.40242 5.43544 5.50704 5.55635 5.63119 5.67117 5.74092 5.82552 5.86778 5.90856 5.98120 5.99889 6.03826 6.07792 6.09771 6.50523 6.74201 6.96797 7.08653 7.45461 7.91817 8.22292 8.44905 8.77872 9.04237 9.39111 9.87088 10.65198 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.001738 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.248655 B =16109.827215 C =16387.123017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.094 3.906 6 H 0.064 0.936 7 C -0.159 4.159 8 C 0.166 3.834 9 H 0.088 0.912 10 N -0.745 5.745 11 C 0.705 3.295 12 O -0.598 6.598 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.283 1.283 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.168 4.168 27 C 0.066 3.934 28 O -0.377 6.377 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.407 0.593 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.275 0.725 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 21.464 -17.266 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.143 4.143 5 C 0.035 3.965 6 H 0.082 0.918 7 C -0.197 4.197 8 C 0.060 3.940 9 H 0.106 0.894 10 N -0.400 5.400 11 C 0.405 3.595 12 O -0.477 6.477 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.208 1.208 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.207 4.207 27 C -0.012 4.012 28 O -0.296 6.296 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.635 21.315 -17.544 27.614 hybrid contribution 0.411 -0.681 1.294 1.519 sum 1.045 20.634 -16.250 26.286 Atomic orbital electron populations 1.21917 0.95437 1.01793 1.01632 1.21076 0.95658 0.95886 0.98837 1.21842 1.00980 0.96042 1.01616 1.21675 1.02018 0.92185 0.98472 1.22123 0.96423 0.92580 0.85339 0.91808 1.22546 1.03208 0.94777 0.99171 1.20732 0.99782 0.90087 0.83391 0.89351 1.45119 1.39759 1.26292 1.28792 1.15874 0.82137 0.80397 0.81126 1.90898 1.32110 1.67807 1.56902 1.44787 1.39831 1.26838 1.26690 1.20780 0.96951 0.85973 0.96260 1.19765 0.87340 0.84186 0.87331 1.90489 1.32621 1.59008 1.66397 1.41777 1.32169 1.20887 1.23504 1.19681 1.16307 1.06890 1.00684 0.87746 1.25323 0.96362 0.96233 0.99754 1.69607 1.25821 1.17462 1.40559 0.85866 0.79121 0.77979 0.80957 1.20849 1.19802 1.19799 1.22657 1.01626 1.01315 0.95142 1.22534 1.00044 0.81143 0.97438 1.87921 1.68979 1.23164 1.49537 0.92526 0.92788 0.92811 0.90308 0.92707 0.92794 0.92830 0.90522 0.90959 0.90159 0.90392 0.76981 0.75609 0.90055 0.90041 0.77010 0.91536 0.90893 0.90024 0.92958 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.95 37.16 0.33 -0.59 16 2 C -0.10 -0.62 2.87 -90.62 -0.26 -0.88 16 3 C -0.15 -0.84 9.19 37.16 0.34 -0.49 16 4 C -0.11 -0.70 4.39 -26.73 -0.12 -0.82 16 5 C 0.09 0.73 2.51 -26.68 -0.07 0.66 16 6 H 0.06 0.49 6.34 -51.93 -0.33 0.17 16 7 C -0.16 -1.26 4.89 -26.59 -0.13 -1.39 16 8 C 0.17 1.73 2.54 -67.75 -0.17 1.56 16 9 H 0.09 1.08 7.57 -51.93 -0.39 0.68 16 10 N -0.74 -8.82 5.09 -58.50 -0.30 -9.11 16 11 C 0.71 11.32 8.54 -86.92 -0.74 10.58 16 12 O -0.60 -11.50 16.01 5.28 0.08 -11.42 16 13 N -0.72 -12.14 5.53 -66.41 -0.37 -12.51 16 14 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 15 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 16 O -0.60 -15.28 15.24 5.55 0.08 -15.20 16 17 N -0.55 -13.61 5.29 -10.96 -0.06 -13.67 16 18 C -0.31 -8.32 9.68 -14.94 -0.14 -8.47 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.84 13.05 55.50 0.72 -23.12 16 22 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 C -0.17 -1.69 5.72 -26.59 -0.15 -1.84 16 27 C 0.07 0.57 6.84 37.21 0.25 0.82 16 28 O -0.38 -3.48 9.86 -35.23 -0.35 -3.83 16 29 H 0.06 0.37 6.46 -51.93 -0.34 0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.61 7.70 -51.92 -0.40 0.21 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.40 3.82 8.62 -40.82 -0.35 3.47 16 41 H 0.41 6.62 7.45 -40.82 -0.30 6.32 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.40 9.46 7.90 -40.82 -0.32 9.13 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -31.51 396.22 -8.59 -40.10 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -8.29 Total: 15.46 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -1.07 Total: 11.84 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.00 Total: -58.42 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.18 Total: -30.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.51 -8.59 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564246.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.799 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds